data_8W6D
#
_model_server_result.job_id            5p0PSB2j3MCl4SOX1ncTZQ 
_model_server_result.datetime_utc      '2024-11-21 14:05:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":803}' 
#
_entry.id    8W6D 
#
_exptl.entry_id    8W6D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W6D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 149 A SER 136 1_555 C NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc2 A O ILE 152 A ILE 139 1_555 C NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc3 A OD1 ASN 154 A ASN 141 1_555 C NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc4 A O GLY 252 A GLY 239 1_555 C NA NA . A NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
metalc ? metalc5 B O SER 149 B SER 136 1_555 F NA NA . B NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc6 B O ILE 152 B ILE 139 1_555 F NA NA . B NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc7 B OD1 ASN 154 B ASN 141 1_555 F NA NA . B NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc8 B O GLY 252 B GLY 239 1_555 F NA NA . B NA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 498 n n 
CBA CAB Y01 sing 499 n n 
CBA CAN Y01 sing 500 n n 
CAN CAJ Y01 sing 501 n n 
CAJ CAO Y01 sing 502 n n 
CAO CBB Y01 sing 503 n n 
CBB CAC Y01 sing 504 n n 
CBB CBE Y01 sing 505 n n 
CBE CAP Y01 sing 506 n n 
CBE CBI Y01 sing 507 n n 
CAP CAQ Y01 sing 508 n n 
CAQ CBG Y01 sing 509 n n 
CBG CBI Y01 sing 510 n n 
CBG CBD Y01 sing 511 n n 
CBI CAE Y01 sing 512 n n 
CBI CAU Y01 sing 513 n n 
CAU CAS Y01 sing 514 n n 
CAS CBF Y01 sing 515 n n 
CBF CBD Y01 sing 516 n n 
CBF CBH Y01 sing 517 n n 
CBD CAK Y01 sing 518 n n 
CAK CAI Y01 sing 519 n n 
CAI CAZ Y01 doub 520 n n 
CAZ CAV Y01 sing 521 n n 
CAZ CBH Y01 sing 522 n n 
CAV CBC Y01 sing 523 n n 
CBH CAD Y01 sing 524 n n 
CBH CAT Y01 sing 525 n n 
CAT CAR Y01 sing 526 n n 
CAR CBC Y01 sing 527 n n 
CBC OAW Y01 sing 528 n n 
OAW CAY Y01 sing 529 n n 
CAY OAG Y01 doub 530 n n 
CAY CAM Y01 sing 531 n n 
CAM CAL Y01 sing 532 n n 
CAL CAX Y01 sing 533 n n 
CAX OAH Y01 sing 534 n n 
CAX OAF Y01 doub 535 n n 
CAA HAA1 Y01 sing 536 n n 
CAA HAA2 Y01 sing 537 n n 
CAA HAA3 Y01 sing 538 n n 
CBA HBA Y01 sing 539 n n 
CAB HAB1 Y01 sing 540 n n 
CAB HAB2 Y01 sing 541 n n 
CAB HAB3 Y01 sing 542 n n 
CAN HAN1 Y01 sing 543 n n 
CAN HAN2 Y01 sing 544 n n 
CAJ HAJ1 Y01 sing 545 n n 
CAJ HAJ2 Y01 sing 546 n n 
CAO HAO1 Y01 sing 547 n n 
CAO HAO2 Y01 sing 548 n n 
CBB HBB Y01 sing 549 n n 
CAC HAC1 Y01 sing 550 n n 
CAC HAC2 Y01 sing 551 n n 
CAC HAC3 Y01 sing 552 n n 
CBE HBE Y01 sing 553 n n 
CAP HAP1 Y01 sing 554 n n 
CAP HAP2 Y01 sing 555 n n 
CAQ HAQ1 Y01 sing 556 n n 
CAQ HAQ2 Y01 sing 557 n n 
CBG HBG Y01 sing 558 n n 
CBD HBD Y01 sing 559 n n 
CAE HAE1 Y01 sing 560 n n 
CAE HAE2 Y01 sing 561 n n 
CAE HAE3 Y01 sing 562 n n 
CAU HAU1 Y01 sing 563 n n 
CAU HAU2 Y01 sing 564 n n 
CAS HAS1 Y01 sing 565 n n 
CAS HAS2 Y01 sing 566 n n 
CBF HBF Y01 sing 567 n n 
CAK HAK1 Y01 sing 568 n n 
CAK HAK2 Y01 sing 569 n n 
CAI HAI Y01 sing 570 n n 
CAV HAV1 Y01 sing 571 n n 
CAV HAV2 Y01 sing 572 n n 
CBC HBC Y01 sing 573 n n 
CAD HAD1 Y01 sing 574 n n 
CAD HAD2 Y01 sing 575 n n 
CAD HAD3 Y01 sing 576 n n 
CAT HAT1 Y01 sing 577 n n 
CAT HAT2 Y01 sing 578 n n 
CAR HAR1 Y01 sing 579 n n 
CAR HAR2 Y01 sing 580 n n 
CAM HAM1 Y01 sing 581 n n 
CAM HAM2 Y01 sing 582 n n 
CAL HAL1 Y01 sing 583 n n 
CAL HAL2 Y01 sing 584 n n 
OAH HAH Y01 sing 585 n n 
#
_atom_sites.entry_id                     8W6D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 801 801 NA NA . 
D 3 3PH A 1 802 902 3PH 3PH . 
E 4 Y01 A 1 803 1001 Y01 Y01 . 
F 2 NA B 1 801 801 NA NA . 
G 3 3PH B 1 802 902 3PH 3PH . 
H 4 Y01 B 1 803 1001 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . H 4 116.669 138.724 139.535 1 38.56 ? CAA Y01 803 B 1 
HETATM 2 C CBA Y01 . . . H 4 117.666 139.611 138.809 1 38.56 ? CBA Y01 803 B 1 
HETATM 3 C CAB Y01 . . . H 4 118.022 140.808 139.674 1 38.56 ? CAB Y01 803 B 1 
HETATM 4 C CAN Y01 . . . H 4 117.113 140.056 137.46 1 38.56 ? CAN Y01 803 B 1 
HETATM 5 C CAJ Y01 . . . H 4 115.968 141.033 137.531 1 38.56 ? CAJ Y01 803 B 1 
HETATM 6 C CAO Y01 . . . H 4 115.069 141.014 136.315 1 38.56 ? CAO Y01 803 B 1 
HETATM 7 C CBB Y01 . . . H 4 115.304 142.073 135.219 1 38.56 ? CBB Y01 803 B 1 
HETATM 8 C CAC Y01 . . . H 4 116.296 143.152 135.649 1 38.56 ? CAC Y01 803 B 1 
HETATM 9 C CBE Y01 . . . H 4 115.641 141.443 133.85 1 38.56 ? CBE Y01 803 B 1 
HETATM 10 C CAP Y01 . . . H 4 116.238 140.011 133.937 1 38.56 ? CAP Y01 803 B 1 
HETATM 11 C CAQ Y01 . . . H 4 115.73 139.248 132.704 1 38.56 ? CAQ Y01 803 B 1 
HETATM 12 C CBG Y01 . . . H 4 115.296 140.37 131.77 1 38.56 ? CBG Y01 803 B 1 
HETATM 13 C CBI Y01 . . . H 4 114.583 141.365 132.705 1 38.56 ? CBI Y01 803 B 1 
HETATM 14 C CAE Y01 . . . H 4 113.244 140.813 133.226 1 38.56 ? CAE Y01 803 B 1 
HETATM 15 C CAU Y01 . . . H 4 114.363 142.637 131.881 1 38.56 ? CAU Y01 803 B 1 
HETATM 16 C CAS Y01 . . . H 4 113.559 142.364 130.603 1 38.56 ? CAS Y01 803 B 1 
HETATM 17 C CBF Y01 . . . H 4 114.169 141.271 129.708 1 38.56 ? CBF Y01 803 B 1 
HETATM 18 C CBD Y01 . . . H 4 114.512 140.008 130.519 1 38.56 ? CBD Y01 803 B 1 
HETATM 19 C CAK Y01 . . . H 4 115.31 139.043 129.653 1 38.56 ? CAK Y01 803 B 1 
HETATM 20 C CAI Y01 . . . H 4 114.699 138.871 128.303 1 38.56 ? CAI Y01 803 B 1 
HETATM 21 C CAZ Y01 . . . H 4 113.739 139.639 127.817 1 38.56 ? CAZ Y01 803 B 1 
HETATM 22 C CAV Y01 . . . H 4 113.061 139.287 126.512 1 38.56 ? CAV Y01 803 B 1 
HETATM 23 C CBH Y01 . . . H 4 113.271 140.93 128.483 1 38.56 ? CBH Y01 803 B 1 
HETATM 24 C CAD Y01 . . . H 4 111.8 140.744 128.902 1 38.56 ? CAD Y01 803 B 1 
HETATM 25 C CAT Y01 . . . H 4 113.379 142.044 127.418 1 38.56 ? CAT Y01 803 B 1 
HETATM 26 C CAR Y01 . . . H 4 112.668 141.693 126.109 1 38.56 ? CAR Y01 803 B 1 
HETATM 27 C CBC Y01 . . . H 4 113.167 140.404 125.503 1 38.56 ? CBC Y01 803 B 1 
HETATM 28 O OAW Y01 . . . H 4 112.316 139.987 124.392 1 38.56 ? OAW Y01 803 B 1 
HETATM 29 C CAY Y01 . . . H 4 112.316 140.678 123.257 1 38.56 ? CAY Y01 803 B 1 
HETATM 30 O OAG Y01 . . . H 4 111.676 141.674 123.077 1 38.56 ? OAG Y01 803 B 1 
HETATM 31 C CAM Y01 . . . H 4 113.156 140.023 122.202 1 38.56 ? CAM Y01 803 B 1 
HETATM 32 C CAL Y01 . . . H 4 112.443 139.857 120.879 1 38.56 ? CAL Y01 803 B 1 
HETATM 33 C CAX Y01 . . . H 4 113.201 139.052 119.84 1 38.56 ? CAX Y01 803 B 1 
HETATM 34 O OAH Y01 . . . H 4 112.682 138.903 118.718 1 38.56 ? OAH Y01 803 B 1 
HETATM 35 O OAF Y01 . . . H 4 114.305 138.568 120.16 1 38.56 ? OAF Y01 803 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           35 
#