data_8W78 # _model_server_result.job_id us6pMHduSy9cNI3PzF-TLA _model_server_result.datetime_utc '2024-12-21 14:09:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8W78 # _exptl.entry_id 8W78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.33 _cell.angle_gamma 90 _cell.entry_id 8W78 _cell.length_a 100.082 _cell.length_b 102.33 _cell.length_c 102.632 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 77 1_555 C SG CYS 37 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 B SG CYS 37 C CYS 77 1_555 D SG CYS 37 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 98 n n PA O2A FAD sing 99 n n PA O5B FAD sing 100 n n PA O3P FAD sing 101 n n O2A HOA2 FAD sing 102 n n O5B C5B FAD sing 103 n n C5B C4B FAD sing 104 n n C5B H51A FAD sing 105 n n C5B H52A FAD sing 106 n n C4B O4B FAD sing 107 n n C4B C3B FAD sing 108 n n C4B H4B FAD sing 109 n n O4B C1B FAD sing 110 n n C3B O3B FAD sing 111 n n C3B C2B FAD sing 112 n n C3B H3B FAD sing 113 n n O3B HO3A FAD sing 114 n n C2B O2B FAD sing 115 n n C2B C1B FAD sing 116 n n C2B H2B FAD sing 117 n n O2B HO2A FAD sing 118 n n C1B N9A FAD sing 119 n n C1B H1B FAD sing 120 n n N9A C8A FAD sing 121 n y N9A C4A FAD sing 122 n y C8A N7A FAD doub 123 n y C8A H8A FAD sing 124 n n N7A C5A FAD sing 125 n y C5A C6A FAD sing 126 n y C5A C4A FAD doub 127 n y C6A N6A FAD sing 128 n n C6A N1A FAD doub 129 n y N6A H61A FAD sing 130 n n N6A H62A FAD sing 131 n n N1A C2A FAD sing 132 n y C2A N3A FAD doub 133 n y C2A H2A FAD sing 134 n n N3A C4A FAD sing 135 n y N1 C2 FAD sing 136 n n N1 C10 FAD doub 137 n n C2 O2 FAD doub 138 n n C2 N3 FAD sing 139 n n N3 C4 FAD sing 140 n n N3 HN3 FAD sing 141 n n C4 O4 FAD doub 142 n n C4 C4X FAD sing 143 n n C4X N5 FAD doub 144 n n C4X C10 FAD sing 145 n n N5 C5X FAD sing 146 n n C5X C6 FAD doub 147 n y C5X C9A FAD sing 148 n y C6 C7 FAD sing 149 n y C6 H6 FAD sing 150 n n C7 C7M FAD sing 151 n n C7 C8 FAD doub 152 n y C7M HM71 FAD sing 153 n n C7M HM72 FAD sing 154 n n C7M HM73 FAD sing 155 n n C8 C8M FAD sing 156 n n C8 C9 FAD sing 157 n y C8M HM81 FAD sing 158 n n C8M HM82 FAD sing 159 n n C8M HM83 FAD sing 160 n n C9 C9A FAD doub 161 n y C9 H9 FAD sing 162 n n C9A N10 FAD sing 163 n n N10 C10 FAD sing 164 n n N10 C1' FAD sing 165 n n C1' C2' FAD sing 166 n n C1' "H1'1" FAD sing 167 n n C1' "H1'2" FAD sing 168 n n C2' O2' FAD sing 169 n n C2' C3' FAD sing 170 n n C2' H2' FAD sing 171 n n O2' HO2' FAD sing 172 n n C3' O3' FAD sing 173 n n C3' C4' FAD sing 174 n n C3' H3' FAD sing 175 n n O3' HO3' FAD sing 176 n n C4' O4' FAD sing 177 n n C4' C5' FAD sing 178 n n C4' H4' FAD sing 179 n n O4' HO4' FAD sing 180 n n C5' O5' FAD sing 181 n n C5' "H5'1" FAD sing 182 n n C5' "H5'2" FAD sing 183 n n O5' P FAD sing 184 n n P O1P FAD doub 185 n n P O2P FAD sing 186 n n P O3P FAD sing 187 n n O2P HOP2 FAD sing 188 n n # _atom_sites.entry_id 8W78 _atom_sites.fract_transf_matrix[1][1] 0.009992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00331 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 501 501 FAD FAD . F 3 AKG A 1 502 601 AKG AKG . G 4 LMT A 1 503 701 LMT LMT . H 2 FAD C 1 501 501 FAD FAD . I 3 AKG C 1 502 601 AKG AKG . J 4 LMT C 1 503 701 LMT LMT . K 2 FAD B 1 501 501 FAD FAD . L 3 AKG B 1 502 601 AKG AKG . M 4 LMT B 1 503 701 LMT LMT . N 2 FAD D 1 501 501 FAD FAD . O 3 AKG D 1 502 601 AKG AKG . P 4 LMT D 1 503 701 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 6.208 -27.184 -17.749 1 31.06 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . E 2 7.497 -26.572 -18.152 1 33.69 -1 O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . E 2 5.211 -27.399 -18.892 1 33.18 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . E 2 5.532 -26.338 -16.605 1 32.28 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . E 2 5.83 -24.937 -16.436 1 32.39 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . E 2 4.648 -24.109 -16.872 1 29.27 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . E 2 4.463 -23.004 -15.955 1 28.49 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . E 2 4.763 -23.499 -18.269 1 32.74 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . E 2 3.528 -23.586 -18.97 1 47.52 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . E 2 5.161 -22.049 -17.98 1 29.63 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . E 2 4.711 -21.16 -18.996 1 32.41 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . E 2 4.408 -21.792 -16.678 1 33.01 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . E 2 4.977 -20.729 -15.854 1 34.86 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . E 2 6.27 -20.624 -15.413 1 40.43 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . E 2 6.504 -19.554 -14.69 1 38.48 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . E 2 5.277 -18.907 -14.655 1 32.31 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . E 2 4.852 -17.71 -14.049 1 37.5 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . E 2 5.649 -16.917 -13.328 1 37.82 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . E 2 3.559 -17.35 -14.209 1 43.33 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . E 2 2.756 -18.139 -14.928 1 37.68 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . E 2 3.043 -19.287 -15.545 1 35.85 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . E 2 4.328 -19.619 -15.37 1 33.87 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . E 2 8.139 -37.52 -20.02 1 41.65 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . E 2 7.659 -38.717 -20.468 1 37.86 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . E 2 6.845 -39.377 -19.813 1 35.34 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . E 2 8.086 -39.214 -21.687 1 34.69 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . E 2 8.983 -38.61 -22.542 1 35.24 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . E 2 9.287 -39.152 -23.604 1 35.93 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . E 2 9.487 -37.339 -22.059 1 40.43 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . E 2 10.343 -36.696 -22.804 1 43.95 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . E 2 10.826 -35.483 -22.34 1 41.85 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . E 2 11.741 -34.781 -23.124 1 39.83 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . E 2 12.252 -33.558 -22.705 1 39.05 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . E 2 13.239 -32.828 -23.578 1 29.47 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . E 2 11.843 -33.02 -21.474 1 36.94 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . E 2 12.374 -31.698 -20.99 1 32.03 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . E 2 10.93 -33.718 -20.688 1 37.59 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . E 2 10.421 -34.939 -21.111 1 40.75 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . E 2 9.489 -35.667 -20.343 1 39.45 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . E 2 9.006 -36.875 -20.783 1 39.82 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . E 2 9.031 -35.161 -19.04 1 37.22 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . E 2 7.842 -34.212 -19.142 1 34.71 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . E 2 7.785 -33.616 -20.438 1 38.22 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . E 2 7.989 -33.114 -18.088 1 28.29 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . E 2 8.559 -33.68 -16.913 1 26.69 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . E 2 6.679 -32.42 -17.716 1 24.77 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . E 2 6.162 -31.74 -18.86 1 31.62 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . E 2 6.841 -31.46 -16.557 1 23.73 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . E 2 5.591 -30.776 -16.333 1 33.4 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . E 2 5.552 -29.248 -15.953 1 31.45 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . E 2 4.13 -28.705 -16.126 1 30.35 -1 O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . E 2 6.151 -29.025 -14.612 1 20.06 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . E 2 6.466 -28.593 -17.07 1 38.1 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 83 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #