data_8W78
#
_model_server_result.job_id            JC439j2e79VOlQ8iZoNxIA 
_model_server_result.datetime_utc      '2024-12-21 13:59:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    8W78 
#
_exptl.entry_id    8W78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.33 
_cell.angle_gamma         90 
_cell.entry_id            8W78 
_cell.length_a            100.082 
_cell.length_b            102.33 
_cell.length_c            102.632 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 37 A CYS 77 1_555 C SG CYS 37 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 37 C CYS 77 1_555 D SG CYS 37 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 98 n n 
PA O2A FAD sing 99 n n 
PA O5B FAD sing 100 n n 
PA O3P FAD sing 101 n n 
O2A HOA2 FAD sing 102 n n 
O5B C5B FAD sing 103 n n 
C5B C4B FAD sing 104 n n 
C5B H51A FAD sing 105 n n 
C5B H52A FAD sing 106 n n 
C4B O4B FAD sing 107 n n 
C4B C3B FAD sing 108 n n 
C4B H4B FAD sing 109 n n 
O4B C1B FAD sing 110 n n 
C3B O3B FAD sing 111 n n 
C3B C2B FAD sing 112 n n 
C3B H3B FAD sing 113 n n 
O3B HO3A FAD sing 114 n n 
C2B O2B FAD sing 115 n n 
C2B C1B FAD sing 116 n n 
C2B H2B FAD sing 117 n n 
O2B HO2A FAD sing 118 n n 
C1B N9A FAD sing 119 n n 
C1B H1B FAD sing 120 n n 
N9A C8A FAD sing 121 n y 
N9A C4A FAD sing 122 n y 
C8A N7A FAD doub 123 n y 
C8A H8A FAD sing 124 n n 
N7A C5A FAD sing 125 n y 
C5A C6A FAD sing 126 n y 
C5A C4A FAD doub 127 n y 
C6A N6A FAD sing 128 n n 
C6A N1A FAD doub 129 n y 
N6A H61A FAD sing 130 n n 
N6A H62A FAD sing 131 n n 
N1A C2A FAD sing 132 n y 
C2A N3A FAD doub 133 n y 
C2A H2A FAD sing 134 n n 
N3A C4A FAD sing 135 n y 
N1 C2 FAD sing 136 n n 
N1 C10 FAD doub 137 n n 
C2 O2 FAD doub 138 n n 
C2 N3 FAD sing 139 n n 
N3 C4 FAD sing 140 n n 
N3 HN3 FAD sing 141 n n 
C4 O4 FAD doub 142 n n 
C4 C4X FAD sing 143 n n 
C4X N5 FAD doub 144 n n 
C4X C10 FAD sing 145 n n 
N5 C5X FAD sing 146 n n 
C5X C6 FAD doub 147 n y 
C5X C9A FAD sing 148 n y 
C6 C7 FAD sing 149 n y 
C6 H6 FAD sing 150 n n 
C7 C7M FAD sing 151 n n 
C7 C8 FAD doub 152 n y 
C7M HM71 FAD sing 153 n n 
C7M HM72 FAD sing 154 n n 
C7M HM73 FAD sing 155 n n 
C8 C8M FAD sing 156 n n 
C8 C9 FAD sing 157 n y 
C8M HM81 FAD sing 158 n n 
C8M HM82 FAD sing 159 n n 
C8M HM83 FAD sing 160 n n 
C9 C9A FAD doub 161 n y 
C9 H9 FAD sing 162 n n 
C9A N10 FAD sing 163 n n 
N10 C10 FAD sing 164 n n 
N10 C1' FAD sing 165 n n 
C1' C2' FAD sing 166 n n 
C1' "H1'1" FAD sing 167 n n 
C1' "H1'2" FAD sing 168 n n 
C2' O2' FAD sing 169 n n 
C2' C3' FAD sing 170 n n 
C2' H2' FAD sing 171 n n 
O2' HO2' FAD sing 172 n n 
C3' O3' FAD sing 173 n n 
C3' C4' FAD sing 174 n n 
C3' H3' FAD sing 175 n n 
O3' HO3' FAD sing 176 n n 
C4' O4' FAD sing 177 n n 
C4' C5' FAD sing 178 n n 
C4' H4' FAD sing 179 n n 
O4' HO4' FAD sing 180 n n 
C5' O5' FAD sing 181 n n 
C5' "H5'1" FAD sing 182 n n 
C5' "H5'2" FAD sing 183 n n 
O5' P FAD sing 184 n n 
P O1P FAD doub 185 n n 
P O2P FAD sing 186 n n 
P O3P FAD sing 187 n n 
O2P HOP2 FAD sing 188 n n 
#
_atom_sites.entry_id                     8W78 
_atom_sites.fract_transf_matrix[1][1]    0.009992 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00331 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010264 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 501 FAD FAD . 
F 3 AKG A 1 502 601 AKG AKG . 
G 4 LMT A 1 503 701 LMT LMT . 
H 2 FAD C 1 501 501 FAD FAD . 
I 3 AKG C 1 502 601 AKG AKG . 
J 4 LMT C 1 503 701 LMT LMT . 
K 2 FAD B 1 501 501 FAD FAD . 
L 3 AKG B 1 502 601 AKG AKG . 
M 4 LMT B 1 503 701 LMT LMT . 
N 2 FAD D 1 501 501 FAD FAD . 
O 3 AKG D 1 502 601 AKG AKG . 
P 4 LMT D 1 503 701 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . H 2 60.275 0.976 -15.926 1 57.83 ? PA FAD 501 C 1 
HETATM 2 O O1A FAD . . . H 2 59.16 0.066 -16.283 1 48.41 -1 O1A FAD 501 C 1 
HETATM 3 O O2A FAD . . . H 2 61.069 1.525 -17.116 1 49.21 ? O2A FAD 501 C 1 
HETATM 4 O O5B FAD . . . H 2 61.263 0.276 -14.91 1 47.98 ? O5B FAD 501 C 1 
HETATM 5 C C5B FAD . . . H 2 60.882 -0.917 -14.194 1 42.3 ? C5B FAD 501 C 1 
HETATM 6 C C4B FAD . . . H 2 61.833 -2.033 -14.544 1 45.69 ? C4B FAD 501 C 1 
HETATM 7 O O4B FAD . . . H 2 61.667 -3.121 -13.612 1 39.51 ? O4B FAD 501 C 1 
HETATM 8 C C3B FAD . . . H 2 61.657 -2.619 -15.948 1 46.75 ? C3B FAD 501 C 1 
HETATM 9 O O3B FAD . . . H 2 62.834 -2.445 -16.727 1 53.31 ? O3B FAD 501 C 1 
HETATM 10 C C2B FAD . . . H 2 61.331 -4.1 -15.703 1 41.25 ? C2B FAD 501 C 1 
HETATM 11 O O2B FAD . . . H 2 61.993 -4.955 -16.628 1 39.43 ? O2B FAD 501 C 1 
HETATM 12 C C1B FAD . . . H 2 61.871 -4.33 -14.295 1 40.3 ? C1B FAD 501 C 1 
HETATM 13 N N9A FAD . . . H 2 61.178 -5.387 -13.57 1 40.12 ? N9A FAD 501 C 1 
HETATM 14 C C8A FAD . . . H 2 59.837 -5.455 -13.301 1 45.19 ? C8A FAD 501 C 1 
HETATM 15 N N7A FAD . . . H 2 59.479 -6.526 -12.634 1 45.25 ? N7A FAD 501 C 1 
HETATM 16 C C5A FAD . . . H 2 60.67 -7.213 -12.454 1 47.4 ? C5A FAD 501 C 1 
HETATM 17 C C6A FAD . . . H 2 60.976 -8.431 -11.82 1 48.31 ? C6A FAD 501 C 1 
HETATM 18 N N6A FAD . . . H 2 60.066 -9.207 -11.224 1 49.28 ? N6A FAD 501 C 1 
HETATM 19 N N1A FAD . . . H 2 62.267 -8.832 -11.819 1 50.11 ? N1A FAD 501 C 1 
HETATM 20 C C2A FAD . . . H 2 63.18 -8.06 -12.415 1 49.9 ? C2A FAD 501 C 1 
HETATM 21 N N3A FAD . . . H 2 63.011 -6.895 -13.043 1 47.77 ? N3A FAD 501 C 1 
HETATM 22 C C4A FAD . . . H 2 61.726 -6.523 -13.028 1 45.74 ? C4A FAD 501 C 1 
HETATM 23 N N1 FAD . . . H 2 58.495 10.858 -18.827 1 42.59 ? N1 FAD 501 C 1 
HETATM 24 C C2 FAD . . . H 2 59.041 12.022 -19.283 1 48.09 ? C2 FAD 501 C 1 
HETATM 25 O O2 FAD . . . H 2 59.804 12.697 -18.585 1 52.63 ? O2 FAD 501 C 1 
HETATM 26 N N3 FAD . . . H 2 58.742 12.466 -20.558 1 46.09 ? N3 FAD 501 C 1 
HETATM 27 C C4 FAD . . . H 2 57.917 11.838 -21.464 1 43.64 ? C4 FAD 501 C 1 
HETATM 28 O O4 FAD . . . H 2 57.726 12.332 -22.573 1 47.3 ? O4 FAD 501 C 1 
HETATM 29 C C4X FAD . . . H 2 57.342 10.603 -20.97 1 40.07 ? C4X FAD 501 C 1 
HETATM 30 N N5 FAD . . . H 2 56.548 9.94 -21.76 1 40.83 ? N5 FAD 501 C 1 
HETATM 31 C C5X FAD . . . H 2 56 8.759 -21.287 1 41.41 ? C5X FAD 501 C 1 
HETATM 32 C C6 FAD . . . H 2 55.146 8.037 -22.119 1 42.37 ? C6 FAD 501 C 1 
HETATM 33 C C7 FAD . . . H 2 54.572 6.845 -21.69 1 44.85 ? C7 FAD 501 C 1 
HETATM 34 C C7M FAD . . . H 2 53.655 6.09 -22.616 1 37.57 ? C7M FAD 501 C 1 
HETATM 35 C C8 FAD . . . H 2 54.853 6.363 -20.401 1 38.73 ? C8 FAD 501 C 1 
HETATM 36 C C8M FAD . . . H 2 54.251 5.076 -19.906 1 41.03 ? C8M FAD 501 C 1 
HETATM 37 C C9 FAD . . . H 2 55.703 7.083 -19.568 1 37.17 ? C9 FAD 501 C 1 
HETATM 38 C C9A FAD . . . H 2 56.275 8.272 -20.001 1 42.39 ? C9A FAD 501 C 1 
HETATM 39 N N10 FAD . . . H 2 57.145 9.021 -19.184 1 42.4 ? N10 FAD 501 C 1 
HETATM 40 C C10 FAD . . . H 2 57.692 10.194 -19.635 1 40.34 ? C10 FAD 501 C 1 
HETATM 41 C C1' FAD . . . H 2 57.468 8.573 -17.822 1 40.58 ? C1' FAD 501 C 1 
HETATM 42 C C2' FAD . . . H 2 58.673 7.642 -17.76 1 36.95 ? C2' FAD 501 C 1 
HETATM 43 O O2' FAD . . . H 2 58.899 7.027 -19.028 1 37.31 ? O2' FAD 501 C 1 
HETATM 44 C C3' FAD . . . H 2 58.414 6.562 -16.709 1 35.66 ? C3' FAD 501 C 1 
HETATM 45 O O3' FAD . . . H 2 57.623 7.12 -15.666 1 48.62 ? O3' FAD 501 C 1 
HETATM 46 C C4' FAD . . . H 2 59.684 5.973 -16.095 1 41.99 ? C4' FAD 501 C 1 
HETATM 47 O O4' FAD . . . H 2 60.32 5.122 -17.049 1 44.98 ? O4' FAD 501 C 1 
HETATM 48 C C5' FAD . . . H 2 59.42 5.216 -14.811 1 41.21 ? C5' FAD 501 C 1 
HETATM 49 O O5' FAD . . . H 2 60.591 4.445 -14.473 1 43.88 ? O5' FAD 501 C 1 
HETATM 50 P P FAD . . . H 2 60.474 2.968 -13.943 1 51.11 ? P FAD 501 C 1 
HETATM 51 O O1P FAD . . . H 2 61.881 2.375 -13.82 1 51.67 -1 O1P FAD 501 C 1 
HETATM 52 O O2P FAD . . . H 2 59.654 2.917 -12.709 1 48.16 ? O2P FAD 501 C 1 
HETATM 53 O O3P FAD . . . H 2 59.72 2.224 -15.123 1 56.65 ? O3P FAD 501 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           41 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#