data_8W78 # _model_server_result.job_id 8aZx8-A-UjkMVTqfKlIVIQ _model_server_result.datetime_utc '2024-12-21 13:53:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 8W78 # _exptl.entry_id 8W78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.33 _cell.angle_gamma 90 _cell.entry_id 8W78 _cell.length_a 100.082 _cell.length_b 102.33 _cell.length_c 102.632 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 77 1_555 C SG CYS 37 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 B SG CYS 37 C CYS 77 1_555 D SG CYS 37 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 98 n n PA O2A FAD sing 99 n n PA O5B FAD sing 100 n n PA O3P FAD sing 101 n n O2A HOA2 FAD sing 102 n n O5B C5B FAD sing 103 n n C5B C4B FAD sing 104 n n C5B H51A FAD sing 105 n n C5B H52A FAD sing 106 n n C4B O4B FAD sing 107 n n C4B C3B FAD sing 108 n n C4B H4B FAD sing 109 n n O4B C1B FAD sing 110 n n C3B O3B FAD sing 111 n n C3B C2B FAD sing 112 n n C3B H3B FAD sing 113 n n O3B HO3A FAD sing 114 n n C2B O2B FAD sing 115 n n C2B C1B FAD sing 116 n n C2B H2B FAD sing 117 n n O2B HO2A FAD sing 118 n n C1B N9A FAD sing 119 n n C1B H1B FAD sing 120 n n N9A C8A FAD sing 121 n y N9A C4A FAD sing 122 n y C8A N7A FAD doub 123 n y C8A H8A FAD sing 124 n n N7A C5A FAD sing 125 n y C5A C6A FAD sing 126 n y C5A C4A FAD doub 127 n y C6A N6A FAD sing 128 n n C6A N1A FAD doub 129 n y N6A H61A FAD sing 130 n n N6A H62A FAD sing 131 n n N1A C2A FAD sing 132 n y C2A N3A FAD doub 133 n y C2A H2A FAD sing 134 n n N3A C4A FAD sing 135 n y N1 C2 FAD sing 136 n n N1 C10 FAD doub 137 n n C2 O2 FAD doub 138 n n C2 N3 FAD sing 139 n n N3 C4 FAD sing 140 n n N3 HN3 FAD sing 141 n n C4 O4 FAD doub 142 n n C4 C4X FAD sing 143 n n C4X N5 FAD doub 144 n n C4X C10 FAD sing 145 n n N5 C5X FAD sing 146 n n C5X C6 FAD doub 147 n y C5X C9A FAD sing 148 n y C6 C7 FAD sing 149 n y C6 H6 FAD sing 150 n n C7 C7M FAD sing 151 n n C7 C8 FAD doub 152 n y C7M HM71 FAD sing 153 n n C7M HM72 FAD sing 154 n n C7M HM73 FAD sing 155 n n C8 C8M FAD sing 156 n n C8 C9 FAD sing 157 n y C8M HM81 FAD sing 158 n n C8M HM82 FAD sing 159 n n C8M HM83 FAD sing 160 n n C9 C9A FAD doub 161 n y C9 H9 FAD sing 162 n n C9A N10 FAD sing 163 n n N10 C10 FAD sing 164 n n N10 C1' FAD sing 165 n n C1' C2' FAD sing 166 n n C1' "H1'1" FAD sing 167 n n C1' "H1'2" FAD sing 168 n n C2' O2' FAD sing 169 n n C2' C3' FAD sing 170 n n C2' H2' FAD sing 171 n n O2' HO2' FAD sing 172 n n C3' O3' FAD sing 173 n n C3' C4' FAD sing 174 n n C3' H3' FAD sing 175 n n O3' HO3' FAD sing 176 n n C4' O4' FAD sing 177 n n C4' C5' FAD sing 178 n n C4' H4' FAD sing 179 n n O4' HO4' FAD sing 180 n n C5' O5' FAD sing 181 n n C5' "H5'1" FAD sing 182 n n C5' "H5'2" FAD sing 183 n n O5' P FAD sing 184 n n P O1P FAD doub 185 n n P O2P FAD sing 186 n n P O3P FAD sing 187 n n O2P HOP2 FAD sing 188 n n # _atom_sites.entry_id 8W78 _atom_sites.fract_transf_matrix[1][1] 0.009992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00331 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 501 501 FAD FAD . F 3 AKG A 1 502 601 AKG AKG . G 4 LMT A 1 503 701 LMT LMT . H 2 FAD C 1 501 501 FAD FAD . I 3 AKG C 1 502 601 AKG AKG . J 4 LMT C 1 503 701 LMT LMT . K 2 FAD B 1 501 501 FAD FAD . L 3 AKG B 1 502 601 AKG AKG . M 4 LMT B 1 503 701 LMT LMT . N 2 FAD D 1 501 501 FAD FAD . O 3 AKG D 1 502 601 AKG AKG . P 4 LMT D 1 503 701 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . K 2 5.413 -3.151 -33.842 1 38.34 ? PA FAD 501 B 1 HETATM 2 O O1A FAD . . . K 2 6.8 -3.523 -33.471 1 32.76 -1 O1A FAD 501 B 1 HETATM 3 O O2A FAD . . . K 2 4.373 -3.337 -32.733 1 40.67 ? O2A FAD 501 B 1 HETATM 4 O O5B FAD . . . K 2 4.959 -3.929 -35.135 1 41.68 ? O5B FAD 501 B 1 HETATM 5 C C5B FAD . . . K 2 5.459 -5.25 -35.428 1 42.62 ? C5B FAD 501 B 1 HETATM 6 C C4B FAD . . . K 2 4.393 -6.27 -35.115 1 38.26 ? C4B FAD 501 B 1 HETATM 7 O O4B FAD . . . K 2 4.503 -7.386 -36.032 1 36.02 ? O4B FAD 501 B 1 HETATM 8 C C3B FAD . . . K 2 4.452 -6.86 -33.705 1 36.59 ? C3B FAD 501 B 1 HETATM 9 O O3B FAD . . . K 2 3.15 -6.962 -33.143 1 46.74 ? O3B FAD 501 B 1 HETATM 10 C C2B FAD . . . K 2 5.091 -8.233 -33.931 1 37.13 ? C2B FAD 501 B 1 HETATM 11 O O2B FAD . . . K 2 4.677 -9.183 -32.956 1 41.77 ? O2B FAD 501 B 1 HETATM 12 C C1B FAD . . . K 2 4.53 -8.593 -35.302 1 35.66 ? C1B FAD 501 B 1 HETATM 13 N N9A FAD . . . K 2 5.323 -9.572 -36.04 1 36.46 ? N9A FAD 501 B 1 HETATM 14 C C8A FAD . . . K 2 6.667 -9.526 -36.298 1 37.26 ? C8A FAD 501 B 1 HETATM 15 N N7A FAD . . . K 2 7.116 -10.551 -36.983 1 35.97 ? N7A FAD 501 B 1 HETATM 16 C C5A FAD . . . K 2 5.986 -11.329 -37.188 1 33.63 ? C5A FAD 501 B 1 HETATM 17 C C6A FAD . . . K 2 5.783 -12.555 -37.85 1 40.56 ? C6A FAD 501 B 1 HETATM 18 N N6A FAD . . . K 2 6.756 -13.245 -38.453 1 37.95 ? N6A FAD 501 B 1 HETATM 19 N N1A FAD . . . K 2 4.528 -13.058 -37.87 1 38.84 ? N1A FAD 501 B 1 HETATM 20 C C2A FAD . . . K 2 3.552 -12.374 -37.269 1 38.82 ? C2A FAD 501 B 1 HETATM 21 N N3A FAD . . . K 2 3.622 -11.212 -36.616 1 37.4 ? N3A FAD 501 B 1 HETATM 22 C C4A FAD . . . K 2 4.873 -10.738 -36.611 1 35.63 ? C4A FAD 501 B 1 HETATM 23 N N1 FAD . . . K 2 6.08 7.059 -31.372 1 31.69 ? N1 FAD 501 B 1 HETATM 24 C C2 FAD . . . K 2 5.41 8.2 -31.037 1 30.64 ? C2 FAD 501 B 1 HETATM 25 O O2 FAD . . . K 2 4.631 8.749 -31.823 1 36.55 ? O2 FAD 501 B 1 HETATM 26 N N3 FAD . . . K 2 5.597 8.763 -29.788 1 35.89 ? N3 FAD 501 B 1 HETATM 27 C C4 FAD . . . K 2 6.424 8.281 -28.796 1 36.63 ? C4 FAD 501 B 1 HETATM 28 O O4 FAD . . . K 2 6.51 8.872 -27.721 1 40.16 ? O4 FAD 501 B 1 HETATM 29 C C4X FAD . . . K 2 7.132 7.07 -29.16 1 34.45 ? C4X FAD 501 B 1 HETATM 30 N N5 FAD . . . K 2 7.938 6.543 -28.282 1 37.36 ? N5 FAD 501 B 1 HETATM 31 C C5X FAD . . . K 2 8.615 5.386 -28.632 1 32.06 ? C5X FAD 501 B 1 HETATM 32 C C6 FAD . . . K 2 9.48 4.808 -27.704 1 30.42 ? C6 FAD 501 B 1 HETATM 33 C C7 FAD . . . K 2 10.18 3.644 -28.006 1 29.19 ? C7 FAD 501 B 1 HETATM 34 C C7M FAD . . . K 2 11.106 3.048 -26.98 1 27.48 ? C7M FAD 501 B 1 HETATM 35 C C8 FAD . . . K 2 10.013 3.043 -29.265 1 28.66 ? C8 FAD 501 B 1 HETATM 36 C C8M FAD . . . K 2 10.753 1.782 -29.624 1 25.81 ? C8M FAD 501 B 1 HETATM 37 C C9 FAD . . . K 2 9.151 3.617 -30.193 1 27.51 ? C9 FAD 501 B 1 HETATM 38 C C9A FAD . . . K 2 8.453 4.78 -29.886 1 27.37 ? C9A FAD 501 B 1 HETATM 39 N N10 FAD . . . K 2 7.567 5.382 -30.802 1 33.03 ? N10 FAD 501 B 1 HETATM 40 C C10 FAD . . . K 2 6.894 6.532 -30.474 1 33.6 ? C10 FAD 501 B 1 HETATM 41 C C1' FAD . . . K 2 7.36 4.806 -32.137 1 31.28 ? C1' FAD 501 B 1 HETATM 42 C C2' FAD . . . K 2 6.245 3.768 -32.182 1 34.16 ? C2' FAD 501 B 1 HETATM 43 O O2' FAD . . . K 2 6.069 3.167 -30.899 1 39.28 ? O2' FAD 501 B 1 HETATM 44 C C3' FAD . . . K 2 6.611 2.69 -33.203 1 35.4 ? C3' FAD 501 B 1 HETATM 45 O O3' FAD . . . K 2 7.331 3.299 -34.268 1 34.45 ? O3' FAD 501 B 1 HETATM 46 C C4' FAD . . . K 2 5.414 1.938 -33.785 1 30.77 ? C4' FAD 501 B 1 HETATM 47 O O4' FAD . . . K 2 4.946 0.983 -32.832 1 31.45 ? O4' FAD 501 B 1 HETATM 48 C C5' FAD . . . K 2 5.741 1.257 -35.097 1 33.91 ? C5' FAD 501 B 1 HETATM 49 O O5' FAD . . . K 2 4.636 0.41 -35.475 1 35.55 ? O5' FAD 501 B 1 HETATM 50 P P FAD . . . K 2 4.833 -1.135 -35.704 1 37.92 ? P FAD 501 B 1 HETATM 51 O O1P FAD . . . K 2 3.472 -1.791 -35.955 1 37.5 -1 O1P FAD 501 B 1 HETATM 52 O O2P FAD . . . K 2 5.858 -1.384 -36.748 1 38.05 ? O2P FAD 501 B 1 HETATM 53 O O3P FAD . . . K 2 5.362 -1.632 -34.294 1 41.44 ? O3P FAD 501 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 53 #