data_8W78
#
_model_server_result.job_id            8OWAScGCs559tHWW2PMLIQ 
_model_server_result.datetime_utc      '2024-12-21 13:40:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":501}' 
#
_entry.id    8W78 
#
_exptl.entry_id    8W78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.33 
_cell.angle_gamma         90 
_cell.entry_id            8W78 
_cell.length_a            100.082 
_cell.length_b            102.33 
_cell.length_c            102.632 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 37 A CYS 77 1_555 C SG CYS 37 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 37 C CYS 77 1_555 D SG CYS 37 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 98 n n 
PA O2A FAD sing 99 n n 
PA O5B FAD sing 100 n n 
PA O3P FAD sing 101 n n 
O2A HOA2 FAD sing 102 n n 
O5B C5B FAD sing 103 n n 
C5B C4B FAD sing 104 n n 
C5B H51A FAD sing 105 n n 
C5B H52A FAD sing 106 n n 
C4B O4B FAD sing 107 n n 
C4B C3B FAD sing 108 n n 
C4B H4B FAD sing 109 n n 
O4B C1B FAD sing 110 n n 
C3B O3B FAD sing 111 n n 
C3B C2B FAD sing 112 n n 
C3B H3B FAD sing 113 n n 
O3B HO3A FAD sing 114 n n 
C2B O2B FAD sing 115 n n 
C2B C1B FAD sing 116 n n 
C2B H2B FAD sing 117 n n 
O2B HO2A FAD sing 118 n n 
C1B N9A FAD sing 119 n n 
C1B H1B FAD sing 120 n n 
N9A C8A FAD sing 121 n y 
N9A C4A FAD sing 122 n y 
C8A N7A FAD doub 123 n y 
C8A H8A FAD sing 124 n n 
N7A C5A FAD sing 125 n y 
C5A C6A FAD sing 126 n y 
C5A C4A FAD doub 127 n y 
C6A N6A FAD sing 128 n n 
C6A N1A FAD doub 129 n y 
N6A H61A FAD sing 130 n n 
N6A H62A FAD sing 131 n n 
N1A C2A FAD sing 132 n y 
C2A N3A FAD doub 133 n y 
C2A H2A FAD sing 134 n n 
N3A C4A FAD sing 135 n y 
N1 C2 FAD sing 136 n n 
N1 C10 FAD doub 137 n n 
C2 O2 FAD doub 138 n n 
C2 N3 FAD sing 139 n n 
N3 C4 FAD sing 140 n n 
N3 HN3 FAD sing 141 n n 
C4 O4 FAD doub 142 n n 
C4 C4X FAD sing 143 n n 
C4X N5 FAD doub 144 n n 
C4X C10 FAD sing 145 n n 
N5 C5X FAD sing 146 n n 
C5X C6 FAD doub 147 n y 
C5X C9A FAD sing 148 n y 
C6 C7 FAD sing 149 n y 
C6 H6 FAD sing 150 n n 
C7 C7M FAD sing 151 n n 
C7 C8 FAD doub 152 n y 
C7M HM71 FAD sing 153 n n 
C7M HM72 FAD sing 154 n n 
C7M HM73 FAD sing 155 n n 
C8 C8M FAD sing 156 n n 
C8 C9 FAD sing 157 n y 
C8M HM81 FAD sing 158 n n 
C8M HM82 FAD sing 159 n n 
C8M HM83 FAD sing 160 n n 
C9 C9A FAD doub 161 n y 
C9 H9 FAD sing 162 n n 
C9A N10 FAD sing 163 n n 
N10 C10 FAD sing 164 n n 
N10 C1' FAD sing 165 n n 
C1' C2' FAD sing 166 n n 
C1' "H1'1" FAD sing 167 n n 
C1' "H1'2" FAD sing 168 n n 
C2' O2' FAD sing 169 n n 
C2' C3' FAD sing 170 n n 
C2' H2' FAD sing 171 n n 
O2' HO2' FAD sing 172 n n 
C3' O3' FAD sing 173 n n 
C3' C4' FAD sing 174 n n 
C3' H3' FAD sing 175 n n 
O3' HO3' FAD sing 176 n n 
C4' O4' FAD sing 177 n n 
C4' C5' FAD sing 178 n n 
C4' H4' FAD sing 179 n n 
O4' HO4' FAD sing 180 n n 
C5' O5' FAD sing 181 n n 
C5' "H5'1" FAD sing 182 n n 
C5' "H5'2" FAD sing 183 n n 
O5' P FAD sing 184 n n 
P O1P FAD doub 185 n n 
P O2P FAD sing 186 n n 
P O3P FAD sing 187 n n 
O2P HOP2 FAD sing 188 n n 
#
_atom_sites.entry_id                     8W78 
_atom_sites.fract_transf_matrix[1][1]    0.009992 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00331 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010264 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 501 FAD FAD . 
F 3 AKG A 1 502 601 AKG AKG . 
G 4 LMT A 1 503 701 LMT LMT . 
H 2 FAD C 1 501 501 FAD FAD . 
I 3 AKG C 1 502 601 AKG AKG . 
J 4 LMT C 1 503 701 LMT LMT . 
K 2 FAD B 1 501 501 FAD FAD . 
L 3 AKG B 1 502 601 AKG AKG . 
M 4 LMT B 1 503 701 LMT LMT . 
N 2 FAD D 1 501 501 FAD FAD . 
O 3 AKG D 1 502 601 AKG AKG . 
P 4 LMT D 1 503 701 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . N 2 62.637 -24.268 -29.705 1 29.75 ? PA FAD 501 D 1 
HETATM 2 O O1A FAD . . . N 2 61.177 -24.033 -29.589 1 34.44 -1 O1A FAD 501 D 1 
HETATM 3 O O2A FAD . . . N 2 63.45 -23.882 -28.466 1 34.89 ? O2A FAD 501 D 1 
HETATM 4 O O5B FAD . . . N 2 63.225 -23.501 -30.96 1 38.05 ? O5B FAD 501 D 1 
HETATM 5 C C5B FAD . . . N 2 62.679 -22.234 -31.387 1 33.83 ? C5B FAD 501 D 1 
HETATM 6 C C4B FAD . . . N 2 63.649 -21.119 -31.082 1 32.48 ? C4B FAD 501 D 1 
HETATM 7 O O4B FAD . . . N 2 63.601 -20.127 -32.134 1 31.4 ? O4B FAD 501 D 1 
HETATM 8 C C3B FAD . . . N 2 63.399 -20.377 -29.766 1 30.88 ? C3B FAD 501 D 1 
HETATM 9 O O3B FAD . . . N 2 64.598 -20.246 -29.011 1 33.56 ? O3B FAD 501 D 1 
HETATM 10 C C2B FAD . . . N 2 62.856 -19.016 -30.219 1 33.58 ? C2B FAD 501 D 1 
HETATM 11 O O2B FAD . . . N 2 63.223 -17.975 -29.321 1 37.54 ? O2B FAD 501 D 1 
HETATM 12 C C1B FAD . . . N 2 63.562 -18.841 -31.559 1 34.06 ? C1B FAD 501 D 1 
HETATM 13 N N9A FAD . . . N 2 62.881 -17.935 -32.481 1 35.2 ? N9A FAD 501 D 1 
HETATM 14 C C8A FAD . . . N 2 61.568 -17.98 -32.868 1 40.01 ? C8A FAD 501 D 1 
HETATM 15 N N7A FAD . . . N 2 61.223 -17.031 -33.706 1 41.08 ? N7A FAD 501 D 1 
HETATM 16 C C5A FAD . . . N 2 62.394 -16.307 -33.881 1 38.53 ? C5A FAD 501 D 1 
HETATM 17 C C6A FAD . . . N 2 62.701 -15.17 -34.652 1 38.73 ? C6A FAD 501 D 1 
HETATM 18 N N6A FAD . . . N 2 61.816 -14.533 -35.425 1 40.16 ? N6A FAD 501 D 1 
HETATM 19 N N1A FAD . . . N 2 63.967 -14.7 -34.6 1 36.76 ? N1A FAD 501 D 1 
HETATM 20 C C2A FAD . . . N 2 64.857 -15.331 -33.829 1 38.03 ? C2A FAD 501 D 1 
HETATM 21 N N3A FAD . . . N 2 64.683 -16.409 -33.061 1 40.02 ? N3A FAD 501 D 1 
HETATM 22 C C4A FAD . . . N 2 63.422 -16.852 -33.13 1 39.37 ? C4A FAD 501 D 1 
HETATM 23 N N1 FAD . . . N 2 62.015 -34.26 -26.333 1 39.47 ? N1 FAD 501 D 1 
HETATM 24 C C2 FAD . . . N 2 62.725 -35.292 -25.791 1 42.33 ? C2 FAD 501 D 1 
HETATM 25 O O2 FAD . . . N 2 63.631 -35.854 -26.415 1 45.11 ? O2 FAD 501 D 1 
HETATM 26 N N3 FAD . . . N 2 62.433 -35.729 -24.511 1 42.72 ? N3 FAD 501 D 1 
HETATM 27 C C4 FAD . . . N 2 61.461 -35.216 -23.682 1 39.79 ? C4 FAD 501 D 1 
HETATM 28 O O4 FAD . . . N 2 61.292 -35.689 -22.559 1 43.66 ? O4 FAD 501 D 1 
HETATM 29 C C4X FAD . . . N 2 60.713 -34.12 -24.265 1 39.49 ? C4X FAD 501 D 1 
HETATM 30 N N5 FAD . . . N 2 59.775 -33.575 -23.551 1 42.57 ? N5 FAD 501 D 1 
HETATM 31 C C5X FAD . . . N 2 59.06 -32.529 -24.107 1 37.21 ? C5X FAD 501 D 1 
HETATM 32 C C6 FAD . . . N 2 58.05 -31.936 -23.355 1 33.46 ? C6 FAD 501 D 1 
HETATM 33 C C7 FAD . . . N 2 57.305 -30.879 -23.866 1 36.68 ? C7 FAD 501 D 1 
HETATM 34 C C7M FAD . . . N 2 56.222 -30.26 -23.022 1 26.73 ? C7M FAD 501 D 1 
HETATM 35 C C8 FAD . . . N 2 57.571 -30.406 -25.162 1 37.57 ? C8 FAD 501 D 1 
HETATM 36 C C8M FAD . . . N 2 56.785 -29.264 -25.746 1 33.09 ? C8M FAD 501 D 1 
HETATM 37 C C9 FAD . . . N 2 58.577 -30.998 -25.918 1 34.09 ? C9 FAD 501 D 1 
HETATM 38 C C9A FAD . . . N 2 59.321 -32.053 -25.401 1 36.48 ? C9A FAD 501 D 1 
HETATM 39 N N10 FAD . . . N 2 60.355 -32.667 -26.135 1 35.7 ? N10 FAD 501 D 1 
HETATM 40 C C10 FAD . . . N 2 61.065 -33.712 -25.6 1 36.81 ? C10 FAD 501 D 1 
HETATM 41 C C1' FAD . . . N 2 60.669 -32.231 -27.504 1 36.38 ? C1' FAD 501 D 1 
HETATM 42 C C2' FAD . . . N 2 61.704 -31.113 -27.568 1 33.35 ? C2' FAD 501 D 1 
HETATM 43 O O2' FAD . . . N 2 61.655 -30.316 -26.384 1 38.17 ? O2' FAD 501 D 1 
HETATM 44 C C3' FAD . . . N 2 61.411 -30.234 -28.785 1 35.8 ? C3' FAD 501 D 1 
HETATM 45 O O3' FAD . . . N 2 60.847 -31.046 -29.809 1 31.26 ? O3' FAD 501 D 1 
HETATM 46 C C4' FAD . . . N 2 62.626 -29.5 -29.355 1 33.46 ? C4' FAD 501 D 1 
HETATM 47 O O4' FAD . . . N 2 63.187 -28.661 -28.344 1 35.98 ? O4' FAD 501 D 1 
HETATM 48 C C5' FAD . . . N 2 62.289 -28.685 -30.586 1 33.51 ? C5' FAD 501 D 1 
HETATM 49 O O5' FAD . . . N 2 63.471 -27.981 -31.024 1 29.56 ? O5' FAD 501 D 1 
HETATM 50 P P FAD . . . N 2 63.431 -26.439 -31.353 1 28.36 ? P FAD 501 D 1 
HETATM 51 O O1P FAD . . . N 2 64.858 -25.939 -31.597 1 41.77 -1 O1P FAD 501 D 1 
HETATM 52 O O2P FAD . . . N 2 62.466 -26.154 -32.444 1 32.13 ? O2P FAD 501 D 1 
HETATM 53 O O3P FAD . . . N 2 62.917 -25.803 -29.991 1 38.99 ? O3P FAD 501 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           53 
#