data_8W78
#
_model_server_result.job_id            1Ip5JbByq-m3qjzTv475cw 
_model_server_result.datetime_utc      '2024-12-21 13:51:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":503}' 
#
_entry.id    8W78 
#
_exptl.entry_id    8W78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.33 
_cell.angle_gamma         90 
_cell.entry_id            8W78 
_cell.length_a            100.082 
_cell.length_b            102.33 
_cell.length_c            102.632 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 37 A CYS 77 1_555 C SG CYS 37 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 37 C CYS 77 1_555 D SG CYS 37 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 298 n n 
C1B O1B LMT sing 299 n n 
C1B O5B LMT sing 300 n n 
C1B H1B LMT sing 301 n n 
C2B C3B LMT sing 302 n n 
C2B O2B LMT sing 303 n n 
C2B H2B LMT sing 304 n n 
C3B C4B LMT sing 305 n n 
C3B O3B LMT sing 306 n n 
C3B H3B LMT sing 307 n n 
C4B C5B LMT sing 308 n n 
C4B O4' LMT sing 309 n n 
C4B H4B LMT sing 310 n n 
C5B C6B LMT sing 311 n n 
C5B O5B LMT sing 312 n n 
C5B H5B LMT sing 313 n n 
C6B O6B LMT sing 314 n n 
C6B "H6'2" LMT sing 315 n n 
C6B "H6'1" LMT sing 316 n n 
O1B C4' LMT sing 317 n n 
O2B H2O1 LMT sing 318 n n 
O3B H3O1 LMT sing 319 n n 
O4' H4O1 LMT sing 320 n n 
O6B H6B LMT sing 321 n n 
C1' C2' LMT sing 322 n n 
C1' O1' LMT sing 323 n n 
C1' O5' LMT sing 324 n n 
C1' H1' LMT sing 325 n n 
C2' C3' LMT sing 326 n n 
C2' O2' LMT sing 327 n n 
C2' H2' LMT sing 328 n n 
C3' C4' LMT sing 329 n n 
C3' O3' LMT sing 330 n n 
C3' H3' LMT sing 331 n n 
C4' C5' LMT sing 332 n n 
C4' H4' LMT sing 333 n n 
C5' C6' LMT sing 334 n n 
C5' O5' LMT sing 335 n n 
C5' H5' LMT sing 336 n n 
C6' O6' LMT sing 337 n n 
C6' H6D LMT sing 338 n n 
C6' H6E LMT sing 339 n n 
O1' C1 LMT sing 340 n n 
O2' H2O2 LMT sing 341 n n 
O3' H3O2 LMT sing 342 n n 
O6' H6' LMT sing 343 n n 
C1 C2 LMT sing 344 n n 
C1 H12 LMT sing 345 n n 
C1 H11 LMT sing 346 n n 
C2 C3 LMT sing 347 n n 
C2 H22 LMT sing 348 n n 
C2 H21 LMT sing 349 n n 
C3 C4 LMT sing 350 n n 
C3 H32 LMT sing 351 n n 
C3 H31 LMT sing 352 n n 
C4 C5 LMT sing 353 n n 
C4 H42 LMT sing 354 n n 
C4 H41 LMT sing 355 n n 
C5 C6 LMT sing 356 n n 
C5 H52 LMT sing 357 n n 
C5 H51 LMT sing 358 n n 
C6 C7 LMT sing 359 n n 
C6 H62 LMT sing 360 n n 
C6 H61 LMT sing 361 n n 
C7 C8 LMT sing 362 n n 
C7 H72 LMT sing 363 n n 
C7 H71 LMT sing 364 n n 
C8 C9 LMT sing 365 n n 
C8 H82 LMT sing 366 n n 
C8 H81 LMT sing 367 n n 
C9 C10 LMT sing 368 n n 
C9 H92 LMT sing 369 n n 
C9 H91 LMT sing 370 n n 
C10 C11 LMT sing 371 n n 
C10 H102 LMT sing 372 n n 
C10 H101 LMT sing 373 n n 
C11 C12 LMT sing 374 n n 
C11 H112 LMT sing 375 n n 
C11 H111 LMT sing 376 n n 
C12 H123 LMT sing 377 n n 
C12 H122 LMT sing 378 n n 
C12 H121 LMT sing 379 n n 
#
_atom_sites.entry_id                     8W78 
_atom_sites.fract_transf_matrix[1][1]    0.009992 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00331 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010264 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 501 501 FAD FAD . 
F 3 AKG A 1 502 601 AKG AKG . 
G 4 LMT A 1 503 701 LMT LMT . 
H 2 FAD C 1 501 501 FAD FAD . 
I 3 AKG C 1 502 601 AKG AKG . 
J 4 LMT C 1 503 701 LMT LMT . 
K 2 FAD B 1 501 501 FAD FAD . 
L 3 AKG B 1 502 601 AKG AKG . 
M 4 LMT B 1 503 701 LMT LMT . 
N 2 FAD D 1 501 501 FAD FAD . 
O 3 AKG D 1 502 601 AKG AKG . 
P 4 LMT D 1 503 701 LMT LMT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . M 4 21.177 15.451 -24.376 1 34.61 ? C1B LMT 503 B 1 
HETATM 2 C C2B LMT . . . M 4 22.251 16.492 -23.983 1 35.73 ? C2B LMT 503 B 1 
HETATM 3 C C3B LMT . . . M 4 22.85 16.195 -22.591 1 34.67 ? C3B LMT 503 B 1 
HETATM 4 C C4B LMT . . . M 4 21.731 15.93 -21.56 1 36.73 ? C4B LMT 503 B 1 
HETATM 5 C C5B LMT . . . M 4 20.853 14.815 -22.134 1 38.41 ? C5B LMT 503 B 1 
HETATM 6 C C6B LMT . . . M 4 19.789 14.415 -21.119 1 34.21 ? C6B LMT 503 B 1 
HETATM 7 O O1B LMT . . . M 4 21.794 14.269 -24.768 1 38.17 ? O1B LMT 503 B 1 
HETATM 8 O O2B LMT . . . M 4 23.224 16.443 -24.949 1 39.62 ? O2B LMT 503 B 1 
HETATM 9 O O3B LMT . . . M 4 23.706 17.187 -22.188 1 32.66 ? O3B LMT 503 B 1 
HETATM 10 O O4' LMT . . . M 4 22.259 15.519 -20.361 1 34.52 ? O4' LMT 503 B 1 
HETATM 11 O O5B LMT . . . M 4 20.264 15.21 -23.345 1 37.6 ? O5B LMT 503 B 1 
HETATM 12 O O6B LMT . . . M 4 18.706 13.872 -21.761 1 33.11 ? O6B LMT 503 B 1 
HETATM 13 C C1' LMT . . . M 4 21.289 11.188 -27.478 1 41.52 ? C1' LMT 503 B 1 
HETATM 14 C C2' LMT . . . M 4 21.12 12.602 -28.07 1 32.83 ? C2' LMT 503 B 1 
HETATM 15 C C3' LMT . . . M 4 21.677 13.664 -27.084 1 33.59 ? C3' LMT 503 B 1 
HETATM 16 C C4' LMT . . . M 4 21.09 13.455 -25.678 1 38.79 ? C4' LMT 503 B 1 
HETATM 17 C C5' LMT . . . M 4 21.381 11.979 -25.335 1 38.08 ? C5' LMT 503 B 1 
HETATM 18 C C6' LMT . . . M 4 21.093 11.595 -23.909 1 34.92 ? C6' LMT 503 B 1 
HETATM 19 O O1' LMT . . . M 4 20.661 10.263 -28.26 1 43.87 ? O1' LMT 503 B 1 
HETATM 20 O O2' LMT . . . M 4 21.836 12.668 -29.237 1 37.22 ? O2' LMT 503 B 1 
HETATM 21 O O3' LMT . . . M 4 21.403 14.922 -27.529 1 33.92 ? O3' LMT 503 B 1 
HETATM 22 O O5' LMT . . . M 4 20.671 11.141 -26.204 1 42.22 ? O5' LMT 503 B 1 
HETATM 23 O O6' LMT . . . M 4 19.732 11.667 -23.765 1 31.76 ? O6' LMT 503 B 1 
HETATM 24 C C1 LMT . . . M 4 21.173 8.953 -28.151 1 39.65 ? C1 LMT 503 B 1 
HETATM 25 C C2 LMT . . . M 4 22.587 9.043 -28.642 1 38.49 ? C2 LMT 503 B 1 
HETATM 26 C C3 LMT . . . M 4 22.814 8.717 -30.079 1 35.07 ? C3 LMT 503 B 1 
HETATM 27 C C4 LMT . . . M 4 22.981 7.226 -30.168 1 27.18 ? C4 LMT 503 B 1 
HETATM 28 C C5 LMT . . . M 4 23.771 6.867 -31.377 1 30 ? C5 LMT 503 B 1 
HETATM 29 C C6 LMT . . . M 4 23.954 5.393 -31.485 1 36.36 ? C6 LMT 503 B 1 
HETATM 30 C C7 LMT . . . M 4 25.204 5.082 -32.248 1 28.67 ? C7 LMT 503 B 1 
HETATM 31 C C8 LMT . . . M 4 25.331 3.605 -32.352 1 37.4 ? C8 LMT 503 B 1 
HETATM 32 C C9 LMT . . . M 4 26.572 3.051 -31.74 1 37.22 ? C9 LMT 503 B 1 
HETATM 33 C C10 LMT . . . M 4 27.363 2.429 -32.852 1 38.1 ? C10 LMT 503 B 1 
HETATM 34 C C11 LMT . . . M 4 27.294 0.937 -32.807 1 47.41 ? C11 LMT 503 B 1 
HETATM 35 C C12 LMT . . . M 4 26.357 0.393 -33.834 1 48.66 ? C12 LMT 503 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           35 
#