data_8W78 # _model_server_result.job_id GoBiKHoXiFVTvBf7EVoTMA _model_server_result.datetime_utc '2024-12-21 14:08:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w78 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":503}' # _entry.id 8W78 # _exptl.entry_id 8W78 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.33 _cell.angle_gamma 90 _cell.entry_id 8W78 _cell.length_a 100.082 _cell.length_b 102.33 _cell.length_c 102.632 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W78 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 77 1_555 C SG CYS 37 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 B SG CYS 37 C CYS 77 1_555 D SG CYS 37 D CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 298 n n C1B O1B LMT sing 299 n n C1B O5B LMT sing 300 n n C1B H1B LMT sing 301 n n C2B C3B LMT sing 302 n n C2B O2B LMT sing 303 n n C2B H2B LMT sing 304 n n C3B C4B LMT sing 305 n n C3B O3B LMT sing 306 n n C3B H3B LMT sing 307 n n C4B C5B LMT sing 308 n n C4B O4' LMT sing 309 n n C4B H4B LMT sing 310 n n C5B C6B LMT sing 311 n n C5B O5B LMT sing 312 n n C5B H5B LMT sing 313 n n C6B O6B LMT sing 314 n n C6B "H6'2" LMT sing 315 n n C6B "H6'1" LMT sing 316 n n O1B C4' LMT sing 317 n n O2B H2O1 LMT sing 318 n n O3B H3O1 LMT sing 319 n n O4' H4O1 LMT sing 320 n n O6B H6B LMT sing 321 n n C1' C2' LMT sing 322 n n C1' O1' LMT sing 323 n n C1' O5' LMT sing 324 n n C1' H1' LMT sing 325 n n C2' C3' LMT sing 326 n n C2' O2' LMT sing 327 n n C2' H2' LMT sing 328 n n C3' C4' LMT sing 329 n n C3' O3' LMT sing 330 n n C3' H3' LMT sing 331 n n C4' C5' LMT sing 332 n n C4' H4' LMT sing 333 n n C5' C6' LMT sing 334 n n C5' O5' LMT sing 335 n n C5' H5' LMT sing 336 n n C6' O6' LMT sing 337 n n C6' H6D LMT sing 338 n n C6' H6E LMT sing 339 n n O1' C1 LMT sing 340 n n O2' H2O2 LMT sing 341 n n O3' H3O2 LMT sing 342 n n O6' H6' LMT sing 343 n n C1 C2 LMT sing 344 n n C1 H12 LMT sing 345 n n C1 H11 LMT sing 346 n n C2 C3 LMT sing 347 n n C2 H22 LMT sing 348 n n C2 H21 LMT sing 349 n n C3 C4 LMT sing 350 n n C3 H32 LMT sing 351 n n C3 H31 LMT sing 352 n n C4 C5 LMT sing 353 n n C4 H42 LMT sing 354 n n C4 H41 LMT sing 355 n n C5 C6 LMT sing 356 n n C5 H52 LMT sing 357 n n C5 H51 LMT sing 358 n n C6 C7 LMT sing 359 n n C6 H62 LMT sing 360 n n C6 H61 LMT sing 361 n n C7 C8 LMT sing 362 n n C7 H72 LMT sing 363 n n C7 H71 LMT sing 364 n n C8 C9 LMT sing 365 n n C8 H82 LMT sing 366 n n C8 H81 LMT sing 367 n n C9 C10 LMT sing 368 n n C9 H92 LMT sing 369 n n C9 H91 LMT sing 370 n n C10 C11 LMT sing 371 n n C10 H102 LMT sing 372 n n C10 H101 LMT sing 373 n n C11 C12 LMT sing 374 n n C11 H112 LMT sing 375 n n C11 H111 LMT sing 376 n n C12 H123 LMT sing 377 n n C12 H122 LMT sing 378 n n C12 H121 LMT sing 379 n n # _atom_sites.entry_id 8W78 _atom_sites.fract_transf_matrix[1][1] 0.009992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00331 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 501 501 FAD FAD . F 3 AKG A 1 502 601 AKG AKG . G 4 LMT A 1 503 701 LMT LMT . H 2 FAD C 1 501 501 FAD FAD . I 3 AKG C 1 502 601 AKG AKG . J 4 LMT C 1 503 701 LMT LMT . K 2 FAD B 1 501 501 FAD FAD . L 3 AKG B 1 502 601 AKG AKG . M 4 LMT B 1 503 701 LMT LMT . N 2 FAD D 1 501 501 FAD FAD . O 3 AKG D 1 502 601 AKG AKG . P 4 LMT D 1 503 701 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . P 4 46.063 -42.579 -20.904 1 54.54 ? C1B LMT 503 D 1 HETATM 2 C C2B LMT . . . P 4 44.947 -43.614 -20.645 1 55.48 ? C2B LMT 503 D 1 HETATM 3 C C3B LMT . . . P 4 44.045 -43.175 -19.473 1 48.1 ? C3B LMT 503 D 1 HETATM 4 C C4B LMT . . . P 4 44.9 -42.796 -18.241 1 49.05 ? C4B LMT 503 D 1 HETATM 5 C C5B LMT . . . P 4 45.927 -41.754 -18.706 1 47.34 ? C5B LMT 503 D 1 HETATM 6 C C6B LMT . . . P 4 46.766 -41.283 -17.525 1 44.86 ? C6B LMT 503 D 1 HETATM 7 O O1B LMT . . . P 4 45.506 -41.439 -21.474 1 57.04 ? O1B LMT 503 D 1 HETATM 8 O O2B LMT . . . P 4 44.219 -43.72 -21.802 1 60.7 ? O2B LMT 503 D 1 HETATM 9 O O3B LMT . . . P 4 43.097 -44.122 -19.182 1 51.04 ? O3B LMT 503 D 1 HETATM 10 O O4' LMT . . . P 4 44.114 -42.254 -17.249 1 43.2 ? O4' LMT 503 D 1 HETATM 11 O O5B LMT . . . P 4 46.748 -42.255 -19.731 1 52.15 ? O5B LMT 503 D 1 HETATM 12 O O6B LMT . . . P 4 47.768 -40.454 -17.96 1 44.07 ? O6B LMT 503 D 1 HETATM 13 C C1' LMT . . . P 4 46.265 -38.544 -24.312 1 42.46 ? C1' LMT 503 D 1 HETATM 14 C C2' LMT . . . P 4 46.554 -39.983 -24.783 1 41.89 ? C2' LMT 503 D 1 HETATM 15 C C3' LMT . . . P 4 45.953 -41.016 -23.789 1 44.83 ? C3' LMT 503 D 1 HETATM 16 C C4' LMT . . . P 4 46.325 -40.677 -22.333 1 50.35 ? C4' LMT 503 D 1 HETATM 17 C C5' LMT . . . P 4 45.953 -39.191 -22.148 1 38.37 ? C5' LMT 503 D 1 HETATM 18 C C6' LMT . . . P 4 46.05 -38.691 -20.731 1 40.68 ? C6' LMT 503 D 1 HETATM 19 O O1' LMT . . . P 4 46.943 -37.644 -25.083 1 33.99 ? O1' LMT 503 D 1 HETATM 20 O O2' LMT . . . P 4 45.961 -40.159 -26.007 1 51.39 ? O2' LMT 503 D 1 HETATM 21 O O3' LMT . . . P 4 46.377 -42.275 -24.098 1 50.24 ? O3' LMT 503 D 1 HETATM 22 O O5' LMT . . . P 4 46.737 -38.391 -22.987 1 43.67 ? O5' LMT 503 D 1 HETATM 23 O O6' LMT . . . P 4 47.383 -38.708 -20.413 1 32.71 ? O6' LMT 503 D 1 HETATM 24 C C1 LMT . . . P 4 46.228 -36.463 -25.361 1 30.79 ? C1 LMT 503 D 1 HETATM 25 C C2 LMT . . . P 4 45.951 -36.524 -26.833 1 32.67 ? C2 LMT 503 D 1 HETATM 26 C C3 LMT . . . P 4 44.581 -36.122 -27.274 1 37.38 ? C3 LMT 503 D 1 HETATM 27 C C4 LMT . . . P 4 44.58 -34.627 -27.457 1 32.33 ? C4 LMT 503 D 1 HETATM 28 C C5 LMT . . . P 4 43.802 -34.255 -28.675 1 30.2 ? C5 LMT 503 D 1 HETATM 29 C C6 LMT . . . P 4 44.076 -32.853 -29.106 1 32.45 ? C6 LMT 503 D 1 HETATM 30 C C7 LMT . . . P 4 43.435 -32.587 -30.437 1 33.86 ? C7 LMT 503 D 1 HETATM 31 C C8 LMT . . . P 4 42.079 -32.013 -30.213 1 30.09 ? C8 LMT 503 D 1 HETATM 32 C C9 LMT . . . P 4 41.952 -30.564 -30.557 1 28.12 ? C9 LMT 503 D 1 HETATM 33 C C10 LMT . . . P 4 41.24 -29.901 -29.411 1 40.7 ? C10 LMT 503 D 1 HETATM 34 C C11 LMT . . . P 4 40.308 -28.83 -29.877 1 47.8 ? C11 LMT 503 D 1 HETATM 35 C C12 LMT . . . P 4 39.597 -28.184 -28.734 1 29.4 ? C12 LMT 503 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 35 #