data_8W7A # _model_server_result.job_id IV47c73lSEMJc7t8JaTSFA _model_server_result.datetime_utc '2024-11-15 03:20:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 8W7A # _exptl.entry_id 8W7A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W7A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 8W7A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GTP _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id GTP _pdbx_nonpoly_scheme.auth_mon_id GTP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 2 101.132 125.757 86.268 0 128.77 ? PG GTP 901 B 1 HETATM 2 O O1G GTP . . . C 2 101.736 124.45 85.811 1 128.77 ? O1G GTP 901 B 1 HETATM 3 O O2G GTP . . . C 2 100.788 125.643 87.733 0 128.77 ? O2G GTP 901 B 1 HETATM 4 O O3G GTP . . . C 2 102.122 126.876 86.05 1 128.77 ? O3G GTP 901 B 1 HETATM 5 O O3B GTP . . . C 2 99.784 126.035 85.432 1 128.77 ? O3B GTP 901 B 1 HETATM 6 P PB GTP . . . C 2 99.686 127.206 84.327 1 128.77 ? PB GTP 901 B 1 HETATM 7 O O1B GTP . . . C 2 98.33 127.168 83.67 1 128.77 ? O1B GTP 901 B 1 HETATM 8 O O2B GTP . . . C 2 99.926 128.554 84.962 1 128.77 ? O2B GTP 901 B 1 HETATM 9 O O3A GTP . . . C 2 100.822 126.889 83.23 1 128.77 ? O3A GTP 901 B 1 HETATM 10 P PA GTP . . . C 2 100.806 125.564 82.314 1 128.77 ? PA GTP 901 B 1 HETATM 11 O O1A GTP . . . C 2 100.569 124.34 83.164 1 128.77 ? O1A GTP 901 B 1 HETATM 12 O O2A GTP . . . C 2 102.105 125.432 81.558 1 128.77 ? O2A GTP 901 B 1 HETATM 13 O O5' GTP . . . C 2 99.57 125.73 81.293 1 128.77 ? O5' GTP 901 B 1 HETATM 14 C C5' GTP . . . C 2 99.354 126.885 80.511 1 128.77 ? C5' GTP 901 B 1 HETATM 15 C C4' GTP . . . C 2 97.976 126.746 79.873 1 128.77 ? C4' GTP 901 B 1 HETATM 16 O O4' GTP . . . C 2 97.454 127.984 79.432 1 128.77 ? O4' GTP 901 B 1 HETATM 17 C C3' GTP . . . C 2 98.045 125.878 78.633 1 128.77 ? C3' GTP 901 B 1 HETATM 18 O O3' GTP . . . C 2 97.752 124.536 78.936 1 128.77 ? O3' GTP 901 B 1 HETATM 19 C C2' GTP . . . C 2 96.987 126.451 77.719 1 128.77 ? C2' GTP 901 B 1 HETATM 20 O O2' GTP . . . C 2 95.87 125.597 77.663 1 128.77 ? O2' GTP 901 B 1 HETATM 21 C C1' GTP . . . C 2 96.588 127.793 78.324 1 128.77 ? C1' GTP 901 B 1 HETATM 22 N N9 GTP . . . C 2 96.719 128.934 77.384 1 128.77 ? N9 GTP 901 B 1 HETATM 23 C C8 GTP . . . C 2 97.174 130.169 77.767 1 128.77 ? C8 GTP 901 B 1 HETATM 24 N N7 GTP . . . C 2 97.16 130.995 76.701 1 128.77 ? N7 GTP 901 B 1 HETATM 25 C C5 GTP . . . C 2 96.688 130.321 75.633 1 128.77 ? C5 GTP 901 B 1 HETATM 26 C C6 GTP . . . C 2 96.477 130.713 74.316 1 128.77 ? C6 GTP 901 B 1 HETATM 27 O O6 GTP . . . C 2 96.738 131.861 73.963 1 128.77 ? O6 GTP 901 B 1 HETATM 28 N N1 GTP . . . C 2 95.973 129.814 73.404 1 128.77 ? N1 GTP 901 B 1 HETATM 29 C C2 GTP . . . C 2 95.683 128.53 73.809 1 128.77 ? C2 GTP 901 B 1 HETATM 30 N N2 GTP . . . C 2 95.196 127.653 72.937 1 128.77 ? N2 GTP 901 B 1 HETATM 31 N N3 GTP . . . C 2 95.893 128.153 75.118 1 128.77 ? N3 GTP 901 B 1 HETATM 32 C C4 GTP . . . C 2 96.394 129.023 76.037 1 128.77 ? C4 GTP 901 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #