data_8W7E # _model_server_result.job_id up8mt9E8VyF0bqngjp-zzQ _model_server_result.datetime_utc '2024-10-18 05:20:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":301}' # _entry.id 8W7E # _exptl.entry_id 8W7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.36 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(3-chlorophenyl)methyl]-6-[(4-chlorophenyl)methyl]-2,4-dihydro-1H-pyrido[2,3-c][2,7]naphthyridin-5-one _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.82 _cell.angle_gamma 90 _cell.entry_id 8W7E _cell.length_a 164.767 _cell.length_b 119.217 _cell.length_c 152.807 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,F,G,H,I,K,M,N,O,P,Q,R,U,V,W,X,Y,AA,BA 1 1 J,L,Z 1 2 E,S,T 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -82.3835 -59.6085 0 3 'crystal symmetry operation' 4_445 -x-1/2,y-1/2,-z -1 0 0 0 1 0 0 0 -1 -82.3835 -59.6085 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N # _chem_comp.formula 'C25 H21 Cl2 N3 O' _chem_comp.formula_weight 450.36 _chem_comp.id 9I3 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(3-chlorophenyl)methyl]-6-[(4-chlorophenyl)methyl]-2,4-dihydro-1H-pyrido[2,3-c][2,7]naphthyridin-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C09 9I3 sing 1 n n C10 C11 9I3 sing 2 n n C09 N08 9I3 sing 3 n n CL1 C01 9I3 sing 4 n n C19 C20 9I3 doub 5 n y C19 C15 9I3 sing 6 n y C06 C01 9I3 doub 7 n y C06 C05 9I3 sing 8 n y C20 C21 9I3 sing 9 n y C07 N08 9I3 sing 10 n n C07 C05 9I3 sing 11 n n N08 C13 9I3 sing 12 n n C01 C02 9I3 sing 13 n y C05 C04 9I3 doub 14 n y C11 C15 9I3 sing 15 n n C11 C12 9I3 doub 16 n n C15 C16 9I3 doub 17 n y C21 N22 9I3 doub 18 n y C02 C03 9I3 doub 19 n y C04 C03 9I3 sing 20 n y C13 C12 9I3 sing 21 n n C12 C18 9I3 sing 22 n n C16 N22 9I3 sing 23 n y C16 N17 9I3 sing 24 n n C18 N17 9I3 sing 25 n n C18 O23 9I3 doub 26 n n N17 C24 9I3 sing 27 n n C30 C29 9I3 doub 28 n y C30 C25 9I3 sing 29 n y C24 C25 9I3 sing 30 n n C29 C28 9I3 sing 31 n y C25 C26 9I3 doub 32 n y C28 CL2 9I3 sing 33 n n C28 C27 9I3 doub 34 n y C26 C27 9I3 sing 35 n y C13 H1 9I3 sing 36 n n C13 H2 9I3 sing 37 n n C21 H3 9I3 sing 38 n n C30 H4 9I3 sing 39 n n C02 H5 9I3 sing 40 n n C03 H6 9I3 sing 41 n n C04 H7 9I3 sing 42 n n C06 H8 9I3 sing 43 n n C07 H9 9I3 sing 44 n n C07 H10 9I3 sing 45 n n C09 H11 9I3 sing 46 n n C09 H12 9I3 sing 47 n n C10 H13 9I3 sing 48 n n C10 H14 9I3 sing 49 n n C19 H15 9I3 sing 50 n n C20 H16 9I3 sing 51 n n C24 H17 9I3 sing 52 n n C24 H18 9I3 sing 53 n n C26 H19 9I3 sing 54 n n C27 H20 9I3 sing 55 n n C29 H21 9I3 sing 56 n n # _atom_sites.entry_id 8W7E _atom_sites.fract_transf_matrix[1][1] 0.006069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00116 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 9I3 A 1 301 301 9I3 LIG . P 2 9I3 B 1 301 301 9I3 LIG . Q 2 9I3 C 1 301 301 9I3 LIG . R 2 9I3 D 1 301 301 9I3 LIG . S 2 9I3 E 1 301 301 9I3 LIG . T 2 9I3 E 1 302 302 9I3 LIG . U 2 9I3 F 1 301 301 9I3 LIG . V 2 9I3 G 1 301 301 9I3 LIG . W 2 9I3 H 1 301 301 9I3 LIG . X 2 9I3 I 1 301 301 9I3 LIG . Y 2 9I3 K 1 301 301 9I3 LIG . Z 2 9I3 L 1 301 301 9I3 LIG . AA 2 9I3 M 1 301 301 9I3 LIG . BA 2 9I3 N 1 301 301 9I3 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 9I3 . . . BA 2 -36.325 -6.623 70.606 1 71.11 ? C11 9I3 301 N 1 HETATM 2 C C12 9I3 . . . BA 2 -36.529 -5.609 71.434 1 70.97 ? C12 9I3 301 N 1 HETATM 3 C C13 9I3 . . . BA 2 -37.941 -5.102 71.706 1 70.31 ? C13 9I3 301 N 1 HETATM 4 C C15 9I3 . . . BA 2 -35.056 -7.07 70.372 1 72.79 ? C15 9I3 301 N 1 HETATM 5 C C16 9I3 . . . BA 2 -33.982 -6.468 71 1 72.87 ? C16 9I3 301 N 1 HETATM 6 C C21 9I3 . . . BA 2 -32.507 -7.937 69.928 1 73.96 ? C21 9I3 301 N 1 HETATM 7 C C25 9I3 . . . BA 2 -32.3 -3.848 71.597 1 74.19 ? C25 9I3 301 N 1 HETATM 8 C C30 9I3 . . . BA 2 -32.955 -2.872 70.859 1 74.07 ? C30 9I3 301 N 1 HETATM 9 C C01 9I3 . . . BA 2 -41.084 -2.28 68.753 1 69.95 ? C01 9I3 301 N 1 HETATM 10 C C02 9I3 . . . BA 2 -41.423 -1.286 69.656 1 69.71 ? C02 9I3 301 N 1 HETATM 11 C C03 9I3 . . . BA 2 -41.299 -1.517 71.015 1 69.21 ? C03 9I3 301 N 1 HETATM 12 C C04 9I3 . . . BA 2 -40.837 -2.741 71.469 1 69.61 ? C04 9I3 301 N 1 HETATM 13 C C05 9I3 . . . BA 2 -40.492 -3.738 70.57 1 70.61 ? C05 9I3 301 N 1 HETATM 14 C C06 9I3 . . . BA 2 -40.622 -3.508 69.208 1 70.56 ? C06 9I3 301 N 1 HETATM 15 C C07 9I3 . . . BA 2 -39.994 -5.084 71.107 1 69.45 ? C07 9I3 301 N 1 HETATM 16 C C09 9I3 . . . BA 2 -38.811 -6.727 70.521 1 71.56 ? C09 9I3 301 N 1 HETATM 17 C C10 9I3 . . . BA 2 -37.488 -7.266 69.934 1 70.93 ? C10 9I3 301 N 1 HETATM 18 C C18 9I3 . . . BA 2 -35.438 -5.01 72.064 1 72.78 ? C18 9I3 301 N 1 HETATM 19 C C19 9I3 . . . BA 2 -34.839 -8.107 69.524 1 73 ? C19 9I3 301 N 1 HETATM 20 C C20 9I3 . . . BA 2 -33.577 -8.546 69.295 1 72.48 ? C20 9I3 301 N 1 HETATM 21 C C24 9I3 . . . BA 2 -33.071 -4.805 72.507 1 73.22 ? C24 9I3 301 N 1 HETATM 22 C C26 9I3 . . . BA 2 -30.92 -3.954 71.526 1 74.66 ? C26 9I3 301 N 1 HETATM 23 C C27 9I3 . . . BA 2 -30.194 -3.096 70.718 1 75.19 ? C27 9I3 301 N 1 HETATM 24 C C28 9I3 . . . BA 2 -30.846 -2.126 69.977 1 75.09 ? C28 9I3 301 N 1 HETATM 25 C C29 9I3 . . . BA 2 -32.226 -2.013 70.047 1 74.12 ? C29 9I3 301 N 1 HETATM 26 N N08 9I3 . . . BA 2 -38.798 -5.403 70.725 1 71.3 ? N08 9I3 301 N 1 HETATM 27 N N17 9I3 . . . BA 2 -34.188 -5.443 71.831 1 72.37 ? N17 9I3 301 N 1 HETATM 28 N N22 9I3 . . . BA 2 -32.723 -6.906 70.773 1 74.03 ? N22 9I3 301 N 1 HETATM 29 O O23 9I3 . . . BA 2 -35.606 -4.108 72.809 1 73.9 ? O23 9I3 301 N 1 HETATM 30 CL CL1 9I3 . . . BA 2 -41.25 -1.968 67.004 1 71.15 ? CL1 9I3 301 N 1 HETATM 31 CL CL2 9I3 . . . BA 2 -29.901 -1.025 68.937 1 78.59 ? CL2 9I3 301 N 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #