data_8W7E
#
_model_server_result.job_id            vUe2tm-qKpH92LzLr6wEHA 
_model_server_result.datetime_utc      '2024-10-18 05:16:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w7e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":301}' 
#
_entry.id    8W7E 
#
_exptl.entry_id    8W7E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.36 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[(3-chlorophenyl)methyl]-6-[(4-chlorophenyl)methyl]-2,4-dihydro-1H-pyrido[2,3-c][2,7]naphthyridin-5-one 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.82 
_cell.angle_gamma         90 
_cell.entry_id            8W7E 
_cell.length_a            164.767 
_cell.length_b            119.217 
_cell.length_c            152.807 
_cell.Z_PDB               56 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W7E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,F,G,H,I,K,M,N,O,P,Q,R,U,V,W,X,Y,AA,BA 1 1 
J,L,Z 1 2 
E,S,T 1 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -82.3835 -59.6085 0 
3 'crystal symmetry operation' 4_445 -x-1/2,y-1/2,-z -1 0 0 0 1 0 0 0 -1 -82.3835 -59.6085 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
#
_chem_comp.formula           'C25 H21 Cl2 N3 O' 
_chem_comp.formula_weight    450.36 
_chem_comp.id                9I3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[(3-chlorophenyl)methyl]-6-[(4-chlorophenyl)methyl]-2,4-dihydro-1H-pyrido[2,3-c][2,7]naphthyridin-5-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C09 9I3 sing 1 n n 
C10 C11 9I3 sing 2 n n 
C09 N08 9I3 sing 3 n n 
CL1 C01 9I3 sing 4 n n 
C19 C20 9I3 doub 5 n y 
C19 C15 9I3 sing 6 n y 
C06 C01 9I3 doub 7 n y 
C06 C05 9I3 sing 8 n y 
C20 C21 9I3 sing 9 n y 
C07 N08 9I3 sing 10 n n 
C07 C05 9I3 sing 11 n n 
N08 C13 9I3 sing 12 n n 
C01 C02 9I3 sing 13 n y 
C05 C04 9I3 doub 14 n y 
C11 C15 9I3 sing 15 n n 
C11 C12 9I3 doub 16 n n 
C15 C16 9I3 doub 17 n y 
C21 N22 9I3 doub 18 n y 
C02 C03 9I3 doub 19 n y 
C04 C03 9I3 sing 20 n y 
C13 C12 9I3 sing 21 n n 
C12 C18 9I3 sing 22 n n 
C16 N22 9I3 sing 23 n y 
C16 N17 9I3 sing 24 n n 
C18 N17 9I3 sing 25 n n 
C18 O23 9I3 doub 26 n n 
N17 C24 9I3 sing 27 n n 
C30 C29 9I3 doub 28 n y 
C30 C25 9I3 sing 29 n y 
C24 C25 9I3 sing 30 n n 
C29 C28 9I3 sing 31 n y 
C25 C26 9I3 doub 32 n y 
C28 CL2 9I3 sing 33 n n 
C28 C27 9I3 doub 34 n y 
C26 C27 9I3 sing 35 n y 
C13 H1 9I3 sing 36 n n 
C13 H2 9I3 sing 37 n n 
C21 H3 9I3 sing 38 n n 
C30 H4 9I3 sing 39 n n 
C02 H5 9I3 sing 40 n n 
C03 H6 9I3 sing 41 n n 
C04 H7 9I3 sing 42 n n 
C06 H8 9I3 sing 43 n n 
C07 H9 9I3 sing 44 n n 
C07 H10 9I3 sing 45 n n 
C09 H11 9I3 sing 46 n n 
C09 H12 9I3 sing 47 n n 
C10 H13 9I3 sing 48 n n 
C10 H14 9I3 sing 49 n n 
C19 H15 9I3 sing 50 n n 
C20 H16 9I3 sing 51 n n 
C24 H17 9I3 sing 52 n n 
C24 H18 9I3 sing 53 n n 
C26 H19 9I3 sing 54 n n 
C27 H20 9I3 sing 55 n n 
C29 H21 9I3 sing 56 n n 
#
_atom_sites.entry_id                     8W7E 
_atom_sites.fract_transf_matrix[1][1]    0.006069 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00116 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008388 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 2 9I3 A 1 301 301 9I3 LIG . 
P 2 9I3 B 1 301 301 9I3 LIG . 
Q 2 9I3 C 1 301 301 9I3 LIG . 
R 2 9I3 D 1 301 301 9I3 LIG . 
S 2 9I3 E 1 301 301 9I3 LIG . 
T 2 9I3 E 1 302 302 9I3 LIG . 
U 2 9I3 F 1 301 301 9I3 LIG . 
V 2 9I3 G 1 301 301 9I3 LIG . 
W 2 9I3 H 1 301 301 9I3 LIG . 
X 2 9I3 I 1 301 301 9I3 LIG . 
Y 2 9I3 K 1 301 301 9I3 LIG . 
Z 2 9I3 L 1 301 301 9I3 LIG . 
AA 2 9I3 M 1 301 301 9I3 LIG . 
BA 2 9I3 N 1 301 301 9I3 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 9I3 . . . X 2 -31.077 18.035 79.995 1 67.98 ? C11 9I3 301 I 1 
HETATM 2 C C12 9I3 . . . X 2 -30.843 19.321 79.779 1 68.16 ? C12 9I3 301 I 1 
HETATM 3 C C13 9I3 . . . X 2 -31.988 20.327 79.759 1 68.51 ? C13 9I3 301 I 1 
HETATM 4 C C15 9I3 . . . X 2 -30.046 17.142 80.016 1 69.14 ? C15 9I3 301 I 1 
HETATM 5 C C16 9I3 . . . X 2 -28.752 17.579 79.813 1 69.14 ? C16 9I3 301 I 1 
HETATM 6 C C21 9I3 . . . X 2 -27.966 15.383 80.05 1 70.6 ? C21 9I3 301 I 1 
HETATM 7 C C25 9I3 . . . X 2 -26.65 19.066 77.967 1 68.82 ? C25 9I3 301 I 1 
HETATM 8 C C30 9I3 . . . X 2 -27.097 19.815 76.889 1 69.87 ? C30 9I3 301 I 1 
HETATM 9 C C01 9I3 . . . X 2 -35.325 22.183 76.418 1 67.39 ? C01 9I3 301 I 1 
HETATM 10 C C02 9I3 . . . X 2 -34.778 23.451 76.499 1 66.15 ? C02 9I3 301 I 1 
HETATM 11 C C03 9I3 . . . X 2 -34.025 23.808 77.602 1 66.6 ? C03 9I3 301 I 1 
HETATM 12 C C04 9I3 . . . X 2 -33.823 22.894 78.622 1 67.01 ? C04 9I3 301 I 1 
HETATM 13 C C05 9I3 . . . X 2 -34.358 21.616 78.545 1 66.89 ? C05 9I3 301 I 1 
HETATM 14 C C06 9I3 . . . X 2 -35.122 21.264 77.44 1 68.03 ? C06 9I3 301 I 1 
HETATM 15 C C07 9I3 . . . X 2 -34.129 20.629 79.696 1 67.23 ? C07 9I3 301 I 1 
HETATM 16 C C09 9I3 . . . X 2 -33.397 18.793 80.414 1 67.64 ? C09 9I3 301 I 1 
HETATM 17 C C10 9I3 . . . X 2 -32.475 17.573 80.212 1 67.15 ? C10 9I3 301 I 1 
HETATM 18 C C18 9I3 . . . X 2 -29.534 19.756 79.576 1 67.93 ? C18 9I3 301 I 1 
HETATM 19 C C19 9I3 . . . X 2 -30.288 15.825 80.235 1 69.4 ? C19 9I3 301 I 1 
HETATM 20 C C20 9I3 . . . X 2 -29.261 14.94 80.255 1 69.45 ? C20 9I3 301 I 1 
HETATM 21 C C24 9I3 . . . X 2 -27.156 19.354 79.382 1 69.47 ? C24 9I3 301 I 1 
HETATM 22 C C26 9I3 . . . X 2 -25.72 18.06 77.766 1 71.09 ? C26 9I3 301 I 1 
HETATM 23 C C27 9I3 . . . X 2 -25.246 17.795 76.492 1 71.79 ? C27 9I3 301 I 1 
HETATM 24 C C28 9I3 . . . X 2 -25.697 18.536 75.415 1 70.63 ? C28 9I3 301 I 1 
HETATM 25 C C29 9I3 . . . X 2 -26.624 19.546 75.612 1 69.83 ? C29 9I3 301 I 1 
HETATM 26 N N08 9I3 . . . X 2 -33.177 19.763 79.519 1 67.79 ? N08 9I3 301 I 1 
HETATM 27 N N17 9I3 . . . X 2 -28.513 18.877 79.589 1 68.56 ? N17 9I3 301 I 1 
HETATM 28 N N22 9I3 . . . X 2 -27.728 16.695 79.832 1 69.07 ? N22 9I3 301 I 1 
HETATM 29 O O23 9I3 . . . X 2 -29.317 20.905 79.384 1 68.64 ? O23 9I3 301 I 1 
HETATM 30 CL CL1 9I3 . . . X 2 -36.291 21.751 74.983 1 67.37 ? CL1 9I3 301 I 1 
HETATM 31 CL CL2 9I3 . . . X 2 -25.077 18.182 73.778 1 72.09 ? CL2 9I3 301 I 1 
#
_model_server_stats.io_time_ms              153 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#