data_8W7H # _model_server_result.job_id XrLv9zyxwb0qgdiBUdT20g _model_server_result.datetime_utc '2024-10-15 11:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 8W7H # _exptl.entry_id 8W7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8W7H _cell.length_a 95.61 _cell.length_b 95.61 _cell.length_c 138.2 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 'complete point assembly' 1 ? monomeric 1 'point asymmetric unit' 2 ? monomeric 1 'point asymmetric unit, std point frame' 3 ? monomeric 1 'crystal asymmetric unit, crystal frame' 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 (1-6) A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G 3 P A,B,C,D,E,F,G 4 (X0)(1) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 47.805 -27.60023 23.03334 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -47.805 82.80069 0 3 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 47.805 82.80069 0 4 'point symmetry operation' ? ? -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -47.805 27.60023 46.06668 5 'point symmetry operation' ? ? -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 47.805 27.60023 46.06668 6 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 110.40092 46.06668 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 46 A GLU 46 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc2 A OE1 GLU 46 A GLU 46 1_555 D NA NA . A NA 303 10_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc3 A O VAL 66 A VAL 66 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc4 A O VAL 66 A VAL 66 1_555 D NA NA . A NA 303 10_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc5 A OG SER 68 A SER 68 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc6 A OG SER 68 A SER 68 1_555 E NA NA . A NA 304 10_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc7 A OD2 ASP 158 A ASP 158 1_555 E NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? metalc ? metalc8 A OD2 ASP 158 A ASP 158 1_555 E NA NA . A NA 304 10_455 ? ? ? ? ? ? ? ? ? ? ? ? 3.069 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8W7H _atom_sites.fract_transf_matrix[1][1] 0.010459 _atom_sites.fract_transf_matrix[1][2] 0.006039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XUH A 1 301 301 XUH MMV . C 3 EDO A 1 302 302 EDO EDO . D 4 NA A 1 303 1 NA NA . E 4 NA A 1 304 2 NA NA . F 5 PO4 A 1 305 1 PO4 PO4 . G 6 HOH A 1 401 142 HOH HOH . G 6 HOH A 2 402 45 HOH HOH . G 6 HOH A 3 403 159 HOH HOH . G 6 HOH A 4 404 60 HOH HOH . G 6 HOH A 5 405 201 HOH HOH . G 6 HOH A 6 406 164 HOH HOH . G 6 HOH A 7 407 162 HOH HOH . G 6 HOH A 8 408 155 HOH HOH . G 6 HOH A 9 409 106 HOH HOH . G 6 HOH A 10 410 24 HOH HOH . G 6 HOH A 11 411 3 HOH HOH . G 6 HOH A 12 412 4 HOH HOH . G 6 HOH A 13 413 51 HOH HOH . G 6 HOH A 14 414 2 HOH HOH . G 6 HOH A 15 415 66 HOH HOH . G 6 HOH A 16 416 14 HOH HOH . G 6 HOH A 17 417 130 HOH HOH . G 6 HOH A 18 418 38 HOH HOH . G 6 HOH A 19 419 35 HOH HOH . G 6 HOH A 20 420 52 HOH HOH . G 6 HOH A 21 421 114 HOH HOH . G 6 HOH A 22 422 8 HOH HOH . G 6 HOH A 23 423 61 HOH HOH . G 6 HOH A 24 424 163 HOH HOH . G 6 HOH A 25 425 23 HOH HOH . G 6 HOH A 26 426 40 HOH HOH . G 6 HOH A 27 427 56 HOH HOH . G 6 HOH A 28 428 6 HOH HOH . G 6 HOH A 29 429 17 HOH HOH . G 6 HOH A 30 430 69 HOH HOH . G 6 HOH A 31 431 117 HOH HOH . G 6 HOH A 32 432 137 HOH HOH . G 6 HOH A 33 433 85 HOH HOH . G 6 HOH A 34 434 9 HOH HOH . G 6 HOH A 35 435 22 HOH HOH . G 6 HOH A 36 436 26 HOH HOH . G 6 HOH A 37 437 78 HOH HOH . G 6 HOH A 38 438 16 HOH HOH . G 6 HOH A 39 439 25 HOH HOH . G 6 HOH A 40 440 36 HOH HOH . G 6 HOH A 41 441 5 HOH HOH . G 6 HOH A 42 442 75 HOH HOH . G 6 HOH A 43 443 27 HOH HOH . G 6 HOH A 44 444 11 HOH HOH . G 6 HOH A 45 445 101 HOH HOH . G 6 HOH A 46 446 92 HOH HOH . G 6 HOH A 47 447 18 HOH HOH . G 6 HOH A 48 448 149 HOH HOH . G 6 HOH A 49 449 177 HOH HOH . G 6 HOH A 50 450 62 HOH HOH . G 6 HOH A 51 451 179 HOH HOH . G 6 HOH A 52 452 76 HOH HOH . G 6 HOH A 53 453 71 HOH HOH . G 6 HOH A 54 454 28 HOH HOH . G 6 HOH A 55 455 30 HOH HOH . G 6 HOH A 56 456 29 HOH HOH . G 6 HOH A 57 457 15 HOH HOH . G 6 HOH A 58 458 53 HOH HOH . G 6 HOH A 59 459 55 HOH HOH . G 6 HOH A 60 460 133 HOH HOH . G 6 HOH A 61 461 97 HOH HOH . G 6 HOH A 62 462 203 HOH HOH . G 6 HOH A 63 463 153 HOH HOH . G 6 HOH A 64 464 113 HOH HOH . G 6 HOH A 65 465 57 HOH HOH . G 6 HOH A 66 466 19 HOH HOH . G 6 HOH A 67 467 46 HOH HOH . G 6 HOH A 68 468 44 HOH HOH . G 6 HOH A 69 469 37 HOH HOH . G 6 HOH A 70 470 82 HOH HOH . G 6 HOH A 71 471 31 HOH HOH . G 6 HOH A 72 472 32 HOH HOH . G 6 HOH A 73 473 105 HOH HOH . G 6 HOH A 74 474 43 HOH HOH . G 6 HOH A 75 475 77 HOH HOH . G 6 HOH A 76 476 10 HOH HOH . G 6 HOH A 77 477 34 HOH HOH . G 6 HOH A 78 478 39 HOH HOH . G 6 HOH A 79 479 74 HOH HOH . G 6 HOH A 80 480 73 HOH HOH . G 6 HOH A 81 481 86 HOH HOH . G 6 HOH A 82 482 199 HOH HOH . G 6 HOH A 83 483 20 HOH HOH . G 6 HOH A 84 484 186 HOH HOH . G 6 HOH A 85 485 64 HOH HOH . G 6 HOH A 86 486 112 HOH HOH . G 6 HOH A 87 487 70 HOH HOH . G 6 HOH A 88 488 49 HOH HOH . G 6 HOH A 89 489 42 HOH HOH . G 6 HOH A 90 490 83 HOH HOH . G 6 HOH A 91 491 21 HOH HOH . G 6 HOH A 92 492 33 HOH HOH . G 6 HOH A 93 493 165 HOH HOH . G 6 HOH A 94 494 72 HOH HOH . G 6 HOH A 95 495 58 HOH HOH . G 6 HOH A 96 496 138 HOH HOH . G 6 HOH A 97 497 120 HOH HOH . G 6 HOH A 98 498 13 HOH HOH . G 6 HOH A 99 499 79 HOH HOH . G 6 HOH A 100 500 161 HOH HOH . G 6 HOH A 101 501 90 HOH HOH . G 6 HOH A 102 502 99 HOH HOH . G 6 HOH A 103 503 194 HOH HOH . G 6 HOH A 104 504 87 HOH HOH . G 6 HOH A 105 505 171 HOH HOH . G 6 HOH A 106 506 109 HOH HOH . G 6 HOH A 107 507 80 HOH HOH . G 6 HOH A 108 508 167 HOH HOH . G 6 HOH A 109 509 12 HOH HOH . G 6 HOH A 110 510 59 HOH HOH . G 6 HOH A 111 511 125 HOH HOH . G 6 HOH A 112 512 81 HOH HOH . G 6 HOH A 113 513 98 HOH HOH . G 6 HOH A 114 514 100 HOH HOH . G 6 HOH A 115 515 41 HOH HOH . G 6 HOH A 116 516 47 HOH HOH . G 6 HOH A 117 517 151 HOH HOH . G 6 HOH A 118 518 122 HOH HOH . G 6 HOH A 119 519 139 HOH HOH . G 6 HOH A 120 520 144 HOH HOH . G 6 HOH A 121 521 93 HOH HOH . G 6 HOH A 122 522 185 HOH HOH . G 6 HOH A 123 523 178 HOH HOH . G 6 HOH A 124 524 84 HOH HOH . G 6 HOH A 125 525 119 HOH HOH . G 6 HOH A 126 526 118 HOH HOH . G 6 HOH A 127 527 174 HOH HOH . G 6 HOH A 128 528 168 HOH HOH . G 6 HOH A 129 529 198 HOH HOH . G 6 HOH A 130 530 202 HOH HOH . G 6 HOH A 131 531 108 HOH HOH . G 6 HOH A 132 532 169 HOH HOH . G 6 HOH A 133 533 170 HOH HOH . G 6 HOH A 134 534 134 HOH HOH . G 6 HOH A 135 535 141 HOH HOH . G 6 HOH A 136 536 104 HOH HOH . G 6 HOH A 137 537 124 HOH HOH . G 6 HOH A 138 538 191 HOH HOH . G 6 HOH A 139 539 156 HOH HOH . G 6 HOH A 140 540 166 HOH HOH . G 6 HOH A 141 541 89 HOH HOH . G 6 HOH A 142 542 115 HOH HOH . G 6 HOH A 143 543 95 HOH HOH . G 6 HOH A 144 544 136 HOH HOH . G 6 HOH A 145 545 94 HOH HOH . G 6 HOH A 146 546 195 HOH HOH . G 6 HOH A 147 547 128 HOH HOH . G 6 HOH A 148 548 68 HOH HOH . G 6 HOH A 149 549 67 HOH HOH . G 6 HOH A 150 550 180 HOH HOH . G 6 HOH A 151 551 116 HOH HOH . G 6 HOH A 152 552 91 HOH HOH . G 6 HOH A 153 553 63 HOH HOH . G 6 HOH A 154 554 132 HOH HOH . G 6 HOH A 155 555 143 HOH HOH . G 6 HOH A 156 556 158 HOH HOH . G 6 HOH A 157 557 193 HOH HOH . G 6 HOH A 158 558 65 HOH HOH . G 6 HOH A 159 559 197 HOH HOH . G 6 HOH A 160 560 102 HOH HOH . G 6 HOH A 161 561 188 HOH HOH . G 6 HOH A 162 562 176 HOH HOH . G 6 HOH A 163 563 196 HOH HOH . G 6 HOH A 164 564 192 HOH HOH . G 6 HOH A 165 565 103 HOH HOH . G 6 HOH A 166 566 181 HOH HOH . G 6 HOH A 167 567 131 HOH HOH . G 6 HOH A 168 568 172 HOH HOH . G 6 HOH A 169 569 183 HOH HOH . G 6 HOH A 170 570 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -10.082 3.863 28.319 1 61.95 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . C 3 -9.486 4.736 27.389 1 51.94 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . C 3 -11.561 3.859 28.242 1 62.87 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . C 3 -12.05 3.317 27.036 1 67.35 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #