data_8W7R # _model_server_result.job_id uZkYYnIwewJQiKUrHfdCUA _model_server_result.datetime_utc '2024-11-23 20:40:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8W7R # _exptl.entry_id 8W7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.442 _cell.angle_gamma 90 _cell.entry_id 8W7R _cell.length_a 49.499 _cell.length_b 126.747 _cell.length_c 55.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,G,H,I,J,K,L,M,O 1 1 A,C,D,E,F,N 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 20.119281 0 -51.227784 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 224 A LYS 224 1_555 F C15 RET . A RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? covale ? covale2 B NZ LYS 224 B LYS 224 1_555 M C15 RET . B RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 8W7R _atom_sites.fract_transf_matrix[1][1] 0.020202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007934 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 303 GOL GOL . D 3 1PE A 1 302 304 1PE 1PE . E 4 OLC A 1 303 305 OLC A6L . F 5 RET A 1 304 306 RET RET . G 4 OLC B 1 301 302 OLC A6L . H 4 OLC B 1 302 303 OLC A6L . I 3 1PE B 1 303 304 1PE 1PE . J 3 1PE B 1 304 305 1PE 1PE . K 3 1PE B 1 305 306 1PE 1PE . L 2 GOL B 1 306 307 GOL GOL . M 5 RET B 1 307 308 RET RET . N 6 HOH A 1 401 4 HOH HOH . N 6 HOH A 2 402 8 HOH HOH . N 6 HOH A 3 403 17 HOH HOH . N 6 HOH A 4 404 23 HOH HOH . N 6 HOH A 5 405 16 HOH HOH . N 6 HOH A 6 406 15 HOH HOH . N 6 HOH A 7 407 9 HOH HOH . N 6 HOH A 8 408 14 HOH HOH . N 6 HOH A 9 409 13 HOH HOH . N 6 HOH A 10 410 2 HOH HOH . N 6 HOH A 11 411 26 HOH HOH . N 6 HOH A 12 412 1 HOH HOH . O 6 HOH B 1 401 5 HOH HOH . O 6 HOH B 2 402 11 HOH HOH . O 6 HOH B 3 403 18 HOH HOH . O 6 HOH B 4 404 22 HOH HOH . O 6 HOH B 5 405 12 HOH HOH . O 6 HOH B 6 406 3 HOH HOH . O 6 HOH B 7 407 7 HOH HOH . O 6 HOH B 8 408 19 HOH HOH . O 6 HOH B 9 409 20 HOH HOH . O 6 HOH B 10 410 25 HOH HOH . O 6 HOH B 11 411 24 HOH HOH . O 6 HOH B 12 412 6 HOH HOH . O 6 HOH B 13 413 21 HOH HOH . O 6 HOH B 14 414 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 3 6.944 5.153 22.024 1 84.26 0 OH2 1PE 302 A 1 HETATM 2 C C12 1PE . . . D 3 6.561 6.057 23.047 1 85.78 0 C12 1PE 302 A 1 HETATM 3 C C22 1PE . . . D 3 6.073 7.365 22.497 1 78.98 0 C22 1PE 302 A 1 HETATM 4 O OH3 1PE . . . D 3 7.06 7.938 21.642 1 79.46 0 OH3 1PE 302 A 1 HETATM 5 C C13 1PE . . . D 3 6.015 9.986 22.339 1 73.53 0 C13 1PE 302 A 1 HETATM 6 C C23 1PE . . . D 3 6.759 9.272 21.246 1 72.53 0 C23 1PE 302 A 1 HETATM 7 O OH4 1PE . . . D 3 6.941 10.496 23.291 1 81.89 0 OH4 1PE 302 A 1 HETATM 8 C C14 1PE . . . D 3 7.374 11.826 25.227 1 91.18 0 C14 1PE 302 A 1 HETATM 9 C C24 1PE . . . D 3 6.384 11.485 24.15 1 82.87 0 C24 1PE 302 A 1 HETATM 10 O OH5 1PE . . . D 3 8.539 12.406 24.646 1 95.49 0 OH5 1PE 302 A 1 HETATM 11 C C15 1PE . . . D 3 10.71 13.441 24.951 1 88.54 0 C15 1PE 302 A 1 HETATM 12 C C25 1PE . . . D 3 9.492 12.834 25.616 1 99.35 0 C25 1PE 302 A 1 HETATM 13 O OH6 1PE . . . D 3 10.472 14.807 24.616 1 87.35 0 OH6 1PE 302 A 1 HETATM 14 C C16 1PE . . . D 3 10.59 17.135 25.217 1 76.5 0 C16 1PE 302 A 1 HETATM 15 C C26 1PE . . . D 3 10.669 15.712 25.701 1 82.98 0 C26 1PE 302 A 1 HETATM 16 O OH7 1PE . . . D 3 10.319 18.055 26.262 1 73.71 0 OH7 1PE 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #