data_8W7R
#
_model_server_result.job_id            eajqtEl4lVGkvWoZxnPhuQ 
_model_server_result.datetime_utc      '2024-11-02 03:34:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w7r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    8W7R 
#
_exptl.entry_id    8W7R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.442 
_cell.angle_gamma         90 
_cell.entry_id            8W7R 
_cell.length_a            49.499 
_cell.length_b            126.747 
_cell.length_c            55.037 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W7R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,G,H,I,J,K,L,M,O 1 1 
A,C,D,E,F,N 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 20.119281 0 -51.227784 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 224 A LYS 224 1_555 F C15 RET . A RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? 
covale ? covale2 B NZ LYS 224 B LYS 224 1_555 M C15 RET . B RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 274 n n 
C10 C9 OLC doub 275 n n 
C10 C11 OLC sing 276 n n 
C9 C8 OLC sing 277 n n 
C17 C16 OLC sing 278 z n 
C11 C12 OLC sing 279 n n 
C8 C7 OLC sing 280 n n 
C24 C22 OLC sing 281 n n 
C24 O25 OLC sing 282 n n 
C16 C15 OLC sing 283 n n 
C12 C13 OLC sing 284 n n 
C7 C6 OLC sing 285 n n 
C15 C14 OLC sing 286 n n 
C13 C14 OLC sing 287 n n 
C6 C5 OLC sing 288 n n 
C5 C4 OLC sing 289 n n 
C4 C3 OLC sing 290 n n 
C3 C2 OLC sing 291 n n 
C2 C1 OLC sing 292 n n 
C21 C22 OLC sing 293 n n 
C21 O20 OLC sing 294 n n 
C1 O19 OLC doub 295 n n 
C1 O20 OLC sing 296 n n 
C22 O23 OLC sing 297 n n 
C18 H18 OLC sing 298 n n 
C18 H18A OLC sing 299 n n 
C18 H18B OLC sing 300 n n 
C10 H10 OLC sing 301 n n 
C9 H9 OLC sing 302 n n 
C17 H17 OLC sing 303 n n 
C17 H17A OLC sing 304 n n 
C11 H11 OLC sing 305 n n 
C11 H11A OLC sing 306 n n 
C8 H8 OLC sing 307 n n 
C8 H8A OLC sing 308 n n 
C24 H24 OLC sing 309 n n 
C24 H24A OLC sing 310 n n 
C16 H16 OLC sing 311 n n 
C16 H16A OLC sing 312 n n 
C12 H12 OLC sing 313 n n 
C12 H12A OLC sing 314 n n 
C7 H7 OLC sing 315 n n 
C7 H7A OLC sing 316 n n 
C15 H15 OLC sing 317 n n 
C15 H15A OLC sing 318 n n 
C13 H13 OLC sing 319 n n 
C13 H13A OLC sing 320 n n 
C6 H6 OLC sing 321 n n 
C6 H6A OLC sing 322 n n 
C14 H14 OLC sing 323 n n 
C14 H14A OLC sing 324 n n 
C5 H5 OLC sing 325 n n 
C5 H5A OLC sing 326 n n 
C4 H4 OLC sing 327 n n 
C4 H4A OLC sing 328 n n 
C3 H3 OLC sing 329 n n 
C3 H3A OLC sing 330 n n 
C2 H2 OLC sing 331 n n 
C2 H2A OLC sing 332 n n 
C21 H21 OLC sing 333 n n 
C21 H21A OLC sing 334 n n 
C22 H22 OLC sing 335 n n 
O25 HO25 OLC sing 336 n n 
O23 HO23 OLC sing 337 n n 
#
_atom_sites.entry_id                     8W7R 
_atom_sites.fract_transf_matrix[1][1]    0.020202 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007934 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019521 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 301 303 GOL GOL . 
D 3 1PE A 1 302 304 1PE 1PE . 
E 4 OLC A 1 303 305 OLC A6L . 
F 5 RET A 1 304 306 RET RET . 
G 4 OLC B 1 301 302 OLC A6L . 
H 4 OLC B 1 302 303 OLC A6L . 
I 3 1PE B 1 303 304 1PE 1PE . 
J 3 1PE B 1 304 305 1PE 1PE . 
K 3 1PE B 1 305 306 1PE 1PE . 
L 2 GOL B 1 306 307 GOL GOL . 
M 5 RET B 1 307 308 RET RET . 
N 6 HOH A 1 401 4 HOH HOH . 
N 6 HOH A 2 402 8 HOH HOH . 
N 6 HOH A 3 403 17 HOH HOH . 
N 6 HOH A 4 404 23 HOH HOH . 
N 6 HOH A 5 405 16 HOH HOH . 
N 6 HOH A 6 406 15 HOH HOH . 
N 6 HOH A 7 407 9 HOH HOH . 
N 6 HOH A 8 408 14 HOH HOH . 
N 6 HOH A 9 409 13 HOH HOH . 
N 6 HOH A 10 410 2 HOH HOH . 
N 6 HOH A 11 411 26 HOH HOH . 
N 6 HOH A 12 412 1 HOH HOH . 
O 6 HOH B 1 401 5 HOH HOH . 
O 6 HOH B 2 402 11 HOH HOH . 
O 6 HOH B 3 403 18 HOH HOH . 
O 6 HOH B 4 404 22 HOH HOH . 
O 6 HOH B 5 405 12 HOH HOH . 
O 6 HOH B 6 406 3 HOH HOH . 
O 6 HOH B 7 407 7 HOH HOH . 
O 6 HOH B 8 408 19 HOH HOH . 
O 6 HOH B 9 409 20 HOH HOH . 
O 6 HOH B 10 410 25 HOH HOH . 
O 6 HOH B 11 411 24 HOH HOH . 
O 6 HOH B 12 412 6 HOH HOH . 
O 6 HOH B 13 413 21 HOH HOH . 
O 6 HOH B 14 414 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . H 4 5.256 22.943 -5.427 1 50.45 0 C18 OLC 302 B 1 
HETATM 2 C C10 OLC . . . H 4 5.256 13.658 -3.091 1 72.02 0 C10 OLC 302 B 1 
HETATM 3 C C9 OLC . . . H 4 5.393 12.478 -2.506 1 84.46 0 C9 OLC 302 B 1 
HETATM 4 C C17 OLC . . . H 4 4.649 21.554 -5.394 1 51.76 0 C17 OLC 302 B 1 
HETATM 5 C C11 OLC . . . H 4 4.714 14.069 -4.431 1 68.15 0 C11 OLC 302 B 1 
HETATM 6 C C8 OLC . . . H 4 5.055 11.076 -2.928 1 100.4 0 C8 OLC 302 B 1 
HETATM 7 C C24 OLC . . . H 4 2.13 5.714 -3.858 1 122.73 0 C24 OLC 302 B 1 
HETATM 8 C C16 OLC . . . H 4 5.628 20.394 -5.402 1 50.72 0 C16 OLC 302 B 1 
HETATM 9 C C12 OLC . . . H 4 5.405 15.262 -5.055 1 60.38 0 C12 OLC 302 B 1 
HETATM 10 C C7 OLC . . . H 4 5.821 10.577 -4.124 1 108.06 0 C7 OLC 302 B 1 
HETATM 11 C C15 OLC . . . H 4 5.164 19.144 -4.671 1 52.14 0 C15 OLC 302 B 1 
HETATM 12 C C13 OLC . . . H 4 4.824 16.617 -4.669 1 53.25 0 C13 OLC 302 B 1 
HETATM 13 C C6 OLC . . . H 4 7.186 9.961 -3.832 1 109.69 0 C6 OLC 302 B 1 
HETATM 14 C C14 OLC . . . H 4 5.444 17.817 -5.369 1 51.08 0 C14 OLC 302 B 1 
HETATM 15 C C5 OLC . . . H 4 7.405 8.587 -4.445 1 122.22 0 C5 OLC 302 B 1 
HETATM 16 C C4 OLC . . . H 4 7.91 8.565 -5.886 1 129.21 0 C4 OLC 302 B 1 
HETATM 17 C C3 OLC . . . H 4 6.82 8.544 -6.959 1 127.7 0 C3 OLC 302 B 1 
HETATM 18 C C2 OLC . . . H 4 6.498 7.166 -7.474 1 121.15 0 C2 OLC 302 B 1 
HETATM 19 C C21 OLC . . . H 4 4.551 6.107 -4.495 1 136.83 0 C21 OLC 302 B 1 
HETATM 20 C C1 OLC . . . H 4 5.919 6.236 -6.435 1 130.62 0 C1 OLC 302 B 1 
HETATM 21 C C22 OLC . . . H 4 3.253 6.719 -4.014 1 128 0 C22 OLC 302 B 1 
HETATM 22 O O19 OLC . . . H 4 6.245 5.085 -6.312 1 128.8 0 O19 OLC 302 B 1 
HETATM 23 O O25 OLC . . . H 4 2.344 4.838 -2.754 1 114.27 0 O25 OLC 302 B 1 
HETATM 24 O O23 OLC . . . H 4 3.465 7.427 -2.791 1 125.3 0 O23 OLC 302 B 1 
HETATM 25 O O20 OLC . . . H 4 5.037 6.847 -5.641 1 142.73 0 O20 OLC 302 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#