data_8W7R # _model_server_result.job_id GshTpRyOPaasdoqSK5Auvg _model_server_result.datetime_utc '2024-11-23 20:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 8W7R # _exptl.entry_id 8W7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.442 _cell.angle_gamma 90 _cell.entry_id 8W7R _cell.length_a 49.499 _cell.length_b 126.747 _cell.length_c 55.037 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,G,H,I,J,K,L,M,O 1 1 A,C,D,E,F,N 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 20.119281 0 -51.227784 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 224 A LYS 224 1_555 F C15 RET . A RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? covale ? covale2 B NZ LYS 224 B LYS 224 1_555 M C15 RET . B RET 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 274 n n C10 C9 OLC doub 275 n n C10 C11 OLC sing 276 n n C9 C8 OLC sing 277 n n C17 C16 OLC sing 278 z n C11 C12 OLC sing 279 n n C8 C7 OLC sing 280 n n C24 C22 OLC sing 281 n n C24 O25 OLC sing 282 n n C16 C15 OLC sing 283 n n C12 C13 OLC sing 284 n n C7 C6 OLC sing 285 n n C15 C14 OLC sing 286 n n C13 C14 OLC sing 287 n n C6 C5 OLC sing 288 n n C5 C4 OLC sing 289 n n C4 C3 OLC sing 290 n n C3 C2 OLC sing 291 n n C2 C1 OLC sing 292 n n C21 C22 OLC sing 293 n n C21 O20 OLC sing 294 n n C1 O19 OLC doub 295 n n C1 O20 OLC sing 296 n n C22 O23 OLC sing 297 n n C18 H18 OLC sing 298 n n C18 H18A OLC sing 299 n n C18 H18B OLC sing 300 n n C10 H10 OLC sing 301 n n C9 H9 OLC sing 302 n n C17 H17 OLC sing 303 n n C17 H17A OLC sing 304 n n C11 H11 OLC sing 305 n n C11 H11A OLC sing 306 n n C8 H8 OLC sing 307 n n C8 H8A OLC sing 308 n n C24 H24 OLC sing 309 n n C24 H24A OLC sing 310 n n C16 H16 OLC sing 311 n n C16 H16A OLC sing 312 n n C12 H12 OLC sing 313 n n C12 H12A OLC sing 314 n n C7 H7 OLC sing 315 n n C7 H7A OLC sing 316 n n C15 H15 OLC sing 317 n n C15 H15A OLC sing 318 n n C13 H13 OLC sing 319 n n C13 H13A OLC sing 320 n n C6 H6 OLC sing 321 n n C6 H6A OLC sing 322 n n C14 H14 OLC sing 323 n n C14 H14A OLC sing 324 n n C5 H5 OLC sing 325 n n C5 H5A OLC sing 326 n n C4 H4 OLC sing 327 n n C4 H4A OLC sing 328 n n C3 H3 OLC sing 329 n n C3 H3A OLC sing 330 n n C2 H2 OLC sing 331 n n C2 H2A OLC sing 332 n n C21 H21 OLC sing 333 n n C21 H21A OLC sing 334 n n C22 H22 OLC sing 335 n n O25 HO25 OLC sing 336 n n O23 HO23 OLC sing 337 n n # _atom_sites.entry_id 8W7R _atom_sites.fract_transf_matrix[1][1] 0.020202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007934 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 303 GOL GOL . D 3 1PE A 1 302 304 1PE 1PE . E 4 OLC A 1 303 305 OLC A6L . F 5 RET A 1 304 306 RET RET . G 4 OLC B 1 301 302 OLC A6L . H 4 OLC B 1 302 303 OLC A6L . I 3 1PE B 1 303 304 1PE 1PE . J 3 1PE B 1 304 305 1PE 1PE . K 3 1PE B 1 305 306 1PE 1PE . L 2 GOL B 1 306 307 GOL GOL . M 5 RET B 1 307 308 RET RET . N 6 HOH A 1 401 4 HOH HOH . N 6 HOH A 2 402 8 HOH HOH . N 6 HOH A 3 403 17 HOH HOH . N 6 HOH A 4 404 23 HOH HOH . N 6 HOH A 5 405 16 HOH HOH . N 6 HOH A 6 406 15 HOH HOH . N 6 HOH A 7 407 9 HOH HOH . N 6 HOH A 8 408 14 HOH HOH . N 6 HOH A 9 409 13 HOH HOH . N 6 HOH A 10 410 2 HOH HOH . N 6 HOH A 11 411 26 HOH HOH . N 6 HOH A 12 412 1 HOH HOH . O 6 HOH B 1 401 5 HOH HOH . O 6 HOH B 2 402 11 HOH HOH . O 6 HOH B 3 403 18 HOH HOH . O 6 HOH B 4 404 22 HOH HOH . O 6 HOH B 5 405 12 HOH HOH . O 6 HOH B 6 406 3 HOH HOH . O 6 HOH B 7 407 7 HOH HOH . O 6 HOH B 8 408 19 HOH HOH . O 6 HOH B 9 409 20 HOH HOH . O 6 HOH B 10 410 25 HOH HOH . O 6 HOH B 11 411 24 HOH HOH . O 6 HOH B 12 412 6 HOH HOH . O 6 HOH B 13 413 21 HOH HOH . O 6 HOH B 14 414 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . H 4 5.256 22.943 -5.427 1 50.45 0 C18 OLC 302 B 1 HETATM 2 C C10 OLC . . . H 4 5.256 13.658 -3.091 1 72.02 0 C10 OLC 302 B 1 HETATM 3 C C9 OLC . . . H 4 5.393 12.478 -2.506 1 84.46 0 C9 OLC 302 B 1 HETATM 4 C C17 OLC . . . H 4 4.649 21.554 -5.394 1 51.76 0 C17 OLC 302 B 1 HETATM 5 C C11 OLC . . . H 4 4.714 14.069 -4.431 1 68.15 0 C11 OLC 302 B 1 HETATM 6 C C8 OLC . . . H 4 5.055 11.076 -2.928 1 100.4 0 C8 OLC 302 B 1 HETATM 7 C C24 OLC . . . H 4 2.13 5.714 -3.858 1 122.73 0 C24 OLC 302 B 1 HETATM 8 C C16 OLC . . . H 4 5.628 20.394 -5.402 1 50.72 0 C16 OLC 302 B 1 HETATM 9 C C12 OLC . . . H 4 5.405 15.262 -5.055 1 60.38 0 C12 OLC 302 B 1 HETATM 10 C C7 OLC . . . H 4 5.821 10.577 -4.124 1 108.06 0 C7 OLC 302 B 1 HETATM 11 C C15 OLC . . . H 4 5.164 19.144 -4.671 1 52.14 0 C15 OLC 302 B 1 HETATM 12 C C13 OLC . . . H 4 4.824 16.617 -4.669 1 53.25 0 C13 OLC 302 B 1 HETATM 13 C C6 OLC . . . H 4 7.186 9.961 -3.832 1 109.69 0 C6 OLC 302 B 1 HETATM 14 C C14 OLC . . . H 4 5.444 17.817 -5.369 1 51.08 0 C14 OLC 302 B 1 HETATM 15 C C5 OLC . . . H 4 7.405 8.587 -4.445 1 122.22 0 C5 OLC 302 B 1 HETATM 16 C C4 OLC . . . H 4 7.91 8.565 -5.886 1 129.21 0 C4 OLC 302 B 1 HETATM 17 C C3 OLC . . . H 4 6.82 8.544 -6.959 1 127.7 0 C3 OLC 302 B 1 HETATM 18 C C2 OLC . . . H 4 6.498 7.166 -7.474 1 121.15 0 C2 OLC 302 B 1 HETATM 19 C C21 OLC . . . H 4 4.551 6.107 -4.495 1 136.83 0 C21 OLC 302 B 1 HETATM 20 C C1 OLC . . . H 4 5.919 6.236 -6.435 1 130.62 0 C1 OLC 302 B 1 HETATM 21 C C22 OLC . . . H 4 3.253 6.719 -4.014 1 128 0 C22 OLC 302 B 1 HETATM 22 O O19 OLC . . . H 4 6.245 5.085 -6.312 1 128.8 0 O19 OLC 302 B 1 HETATM 23 O O25 OLC . . . H 4 2.344 4.838 -2.754 1 114.27 0 O25 OLC 302 B 1 HETATM 24 O O23 OLC . . . H 4 3.465 7.427 -2.791 1 125.3 0 O23 OLC 302 B 1 HETATM 25 O O20 OLC . . . H 4 5.037 6.847 -5.641 1 142.73 0 O20 OLC 302 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #