data_8W84 # _model_server_result.job_id VAM_m6JFn_S4gr2DL6LtcA _model_server_result.datetime_utc '2024-11-17 18:50:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2000}' # _entry.id 8W84 # _exptl.entry_id 8W84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W84 _cell.length_a 82.86 _cell.length_b 138.707 _cell.length_c 201.928 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 36 A CYS 36 1_555 A SG CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 150 A CYS 150 1_555 A SG CYS 206 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 B SG CYS 135 B CYS 135 1_555 B SG CYS 195 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 C SG CYS 109 C CYS 109 1_555 C SG CYS 165 C CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 45 D CYS 1015 1_555 D SG CYS 109 D CYS 1079 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 D SG CYS 147 D CYS 1117 1_555 D SG CYS 203 D CYS 1173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 C ND2 ASN 120 C ASN 120 1_555 E C1 NAG . C NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 D ND2 ASN 49 D ASN 1019 1_555 F C1 NAG . D NAG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8W84 _atom_sites.fract_transf_matrix[1][1] 0.012069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG C 1 1000 1000 NAG NAG . F 5 NAG D 1 2000 2000 NAG NAG . G 6 HOH A 1 301 301 HOH HOH . G 6 HOH A 2 302 302 HOH HOH . G 6 HOH A 3 303 303 HOH HOH . G 6 HOH A 4 304 304 HOH HOH . G 6 HOH A 5 305 305 HOH HOH . G 6 HOH A 6 306 306 HOH HOH . G 6 HOH A 7 307 307 HOH HOH . G 6 HOH A 8 308 308 HOH HOH . G 6 HOH A 9 309 309 HOH HOH . G 6 HOH A 10 310 310 HOH HOH . G 6 HOH A 11 311 311 HOH HOH . G 6 HOH A 12 312 312 HOH HOH . G 6 HOH A 13 313 313 HOH HOH . G 6 HOH A 14 314 314 HOH HOH . G 6 HOH A 15 315 315 HOH HOH . G 6 HOH A 16 316 316 HOH HOH . G 6 HOH A 17 317 317 HOH HOH . G 6 HOH A 18 318 318 HOH HOH . G 6 HOH A 19 319 319 HOH HOH . G 6 HOH A 20 320 320 HOH HOH . G 6 HOH A 21 321 321 HOH HOH . G 6 HOH A 22 322 322 HOH HOH . G 6 HOH A 23 323 323 HOH HOH . G 6 HOH A 24 324 324 HOH HOH . G 6 HOH A 25 325 325 HOH HOH . G 6 HOH A 26 326 326 HOH HOH . G 6 HOH A 27 327 327 HOH HOH . G 6 HOH A 28 328 328 HOH HOH . G 6 HOH A 29 329 329 HOH HOH . G 6 HOH A 30 330 330 HOH HOH . G 6 HOH A 31 331 331 HOH HOH . H 6 HOH B 1 301 301 HOH HOH . H 6 HOH B 2 302 302 HOH HOH . H 6 HOH B 3 303 303 HOH HOH . H 6 HOH B 4 304 304 HOH HOH . H 6 HOH B 5 305 305 HOH HOH . H 6 HOH B 6 306 306 HOH HOH . H 6 HOH B 7 307 307 HOH HOH . H 6 HOH B 8 308 308 HOH HOH . H 6 HOH B 9 309 309 HOH HOH . H 6 HOH B 10 310 310 HOH HOH . H 6 HOH B 11 311 311 HOH HOH . H 6 HOH B 12 312 312 HOH HOH . H 6 HOH B 13 313 313 HOH HOH . H 6 HOH B 14 314 314 HOH HOH . H 6 HOH B 15 315 315 HOH HOH . H 6 HOH B 16 316 316 HOH HOH . H 6 HOH B 17 317 317 HOH HOH . H 6 HOH B 18 318 318 HOH HOH . H 6 HOH B 19 319 319 HOH HOH . H 6 HOH B 20 320 320 HOH HOH . H 6 HOH B 21 321 321 HOH HOH . H 6 HOH B 22 322 322 HOH HOH . H 6 HOH B 23 323 323 HOH HOH . H 6 HOH B 24 324 324 HOH HOH . H 6 HOH B 25 325 325 HOH HOH . H 6 HOH B 26 326 326 HOH HOH . H 6 HOH B 27 327 327 HOH HOH . H 6 HOH B 28 328 328 HOH HOH . H 6 HOH B 29 329 329 HOH HOH . H 6 HOH B 30 330 330 HOH HOH . I 6 HOH C 1 1101 1101 HOH HOH . I 6 HOH C 2 1102 1102 HOH HOH . I 6 HOH C 3 1103 1103 HOH HOH . I 6 HOH C 4 1104 1104 HOH HOH . I 6 HOH C 5 1105 1105 HOH HOH . I 6 HOH C 6 1106 1106 HOH HOH . I 6 HOH C 7 1107 1107 HOH HOH . I 6 HOH C 8 1108 1108 HOH HOH . I 6 HOH C 9 1109 1109 HOH HOH . I 6 HOH C 10 1110 1110 HOH HOH . I 6 HOH C 11 1111 1111 HOH HOH . I 6 HOH C 12 1112 1112 HOH HOH . I 6 HOH C 13 1113 1113 HOH HOH . I 6 HOH C 14 1114 1114 HOH HOH . I 6 HOH C 15 1115 1115 HOH HOH . I 6 HOH C 16 1116 1116 HOH HOH . I 6 HOH C 17 1117 1117 HOH HOH . I 6 HOH C 18 1118 1118 HOH HOH . I 6 HOH C 19 1119 1119 HOH HOH . I 6 HOH C 20 1120 1120 HOH HOH . I 6 HOH C 21 1121 1121 HOH HOH . I 6 HOH C 22 1122 1122 HOH HOH . I 6 HOH C 23 1123 1123 HOH HOH . I 6 HOH C 24 1124 1124 HOH HOH . I 6 HOH C 25 1125 1125 HOH HOH . I 6 HOH C 26 1126 1126 HOH HOH . I 6 HOH C 27 1127 1127 HOH HOH . I 6 HOH C 28 1128 1128 HOH HOH . I 6 HOH C 29 1129 1129 HOH HOH . I 6 HOH C 30 1130 1130 HOH HOH . I 6 HOH C 31 1131 1131 HOH HOH . I 6 HOH C 32 1132 1132 HOH HOH . I 6 HOH C 33 1133 1133 HOH HOH . I 6 HOH C 34 1134 1134 HOH HOH . I 6 HOH C 35 1135 1135 HOH HOH . I 6 HOH C 36 1136 1136 HOH HOH . I 6 HOH C 37 1137 1137 HOH HOH . I 6 HOH C 38 1138 1138 HOH HOH . I 6 HOH C 39 1139 1139 HOH HOH . I 6 HOH C 40 1140 1140 HOH HOH . I 6 HOH C 41 1141 1141 HOH HOH . I 6 HOH C 42 1142 1142 HOH HOH . J 6 HOH D 1 2101 2101 HOH HOH . J 6 HOH D 2 2102 2102 HOH HOH . J 6 HOH D 3 2103 2103 HOH HOH . J 6 HOH D 4 2104 2104 HOH HOH . J 6 HOH D 5 2105 2105 HOH HOH . J 6 HOH D 6 2106 2106 HOH HOH . J 6 HOH D 7 2107 2107 HOH HOH . J 6 HOH D 8 2108 2108 HOH HOH . J 6 HOH D 9 2109 2109 HOH HOH . J 6 HOH D 10 2110 2110 HOH HOH . J 6 HOH D 11 2111 2111 HOH HOH . J 6 HOH D 12 2112 2112 HOH HOH . J 6 HOH D 13 2113 2113 HOH HOH . J 6 HOH D 14 2114 2114 HOH HOH . J 6 HOH D 15 2115 2115 HOH HOH . J 6 HOH D 16 2116 2116 HOH HOH . J 6 HOH D 17 2117 2117 HOH HOH . J 6 HOH D 18 2118 2118 HOH HOH . J 6 HOH D 19 2119 2119 HOH HOH . J 6 HOH D 20 2120 2120 HOH HOH . J 6 HOH D 21 2121 2121 HOH HOH . J 6 HOH D 22 2122 2122 HOH HOH . J 6 HOH D 23 2123 2123 HOH HOH . J 6 HOH D 24 2124 2124 HOH HOH . J 6 HOH D 25 2125 2125 HOH HOH . J 6 HOH D 26 2126 2126 HOH HOH . J 6 HOH D 27 2127 2127 HOH HOH . J 6 HOH D 28 2128 2128 HOH HOH . J 6 HOH D 29 2129 2129 HOH HOH . J 6 HOH D 30 2130 2130 HOH HOH . J 6 HOH D 31 2131 2131 HOH HOH . J 6 HOH D 32 2132 2132 HOH HOH . J 6 HOH D 33 2133 2133 HOH HOH . J 6 HOH D 34 2134 2134 HOH HOH . J 6 HOH D 35 2135 2135 HOH HOH . J 6 HOH D 36 2136 2136 HOH HOH . J 6 HOH D 37 2137 2137 HOH HOH . J 6 HOH D 38 2138 2138 HOH HOH . J 6 HOH D 39 2139 2139 HOH HOH . J 6 HOH D 40 2140 2140 HOH HOH . J 6 HOH D 41 2141 2141 HOH HOH . J 6 HOH D 42 2142 2142 HOH HOH . J 6 HOH D 43 2143 2143 HOH HOH . J 6 HOH D 44 2144 2144 HOH HOH . J 6 HOH D 45 2145 2145 HOH HOH . J 6 HOH D 46 2146 2146 HOH HOH . J 6 HOH D 47 2147 2147 HOH HOH . J 6 HOH D 48 2148 2148 HOH HOH . J 6 HOH D 49 2149 2149 HOH HOH . J 6 HOH D 50 2150 2150 HOH HOH . J 6 HOH D 51 2151 2151 HOH HOH . J 6 HOH D 52 2152 2152 HOH HOH . J 6 HOH D 53 2153 2153 HOH HOH . J 6 HOH D 54 2154 2154 HOH HOH . J 6 HOH D 55 2155 2155 HOH HOH . J 6 HOH D 56 2156 2156 HOH HOH . J 6 HOH D 57 2157 2157 HOH HOH . J 6 HOH D 58 2158 2158 HOH HOH . J 6 HOH D 59 2159 2159 HOH HOH . J 6 HOH D 60 2160 2160 HOH HOH . J 6 HOH D 61 2161 2161 HOH HOH . J 6 HOH D 62 2162 2162 HOH HOH . J 6 HOH D 63 2163 2163 HOH HOH . J 6 HOH D 64 2164 2164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 5 40.493 -21.994 4.806 1 75.64 ? C1 NAG 2000 D 1 HETATM 2 C C2 NAG . . . F 5 40.498 -23.351 4.098 1 76.53 ? C2 NAG 2000 D 1 HETATM 3 C C3 NAG . . . F 5 39.787 -23.497 2.747 1 76.86 ? C3 NAG 2000 D 1 HETATM 4 C C4 NAG . . . F 5 38.961 -22.264 2.376 1 77.09 ? C4 NAG 2000 D 1 HETATM 5 C C5 NAG . . . F 5 39.675 -20.969 2.761 1 76.97 ? C5 NAG 2000 D 1 HETATM 6 C C6 NAG . . . F 5 38.94 -19.717 2.336 1 77.25 ? C6 NAG 2000 D 1 HETATM 7 C C7 NAG . . . F 5 42.483 -24.625 4.799 1 77.03 ? C7 NAG 2000 D 1 HETATM 8 C C8 NAG . . . F 5 43.976 -24.725 4.693 1 77.13 ? C8 NAG 2000 D 1 HETATM 9 N N2 NAG . . . F 5 41.895 -23.739 3.984 1 76.86 ? N2 NAG 2000 D 1 HETATM 10 O O3 NAG . . . F 5 38.936 -24.639 2.797 1 76.85 ? O3 NAG 2000 D 1 HETATM 11 O O4 NAG . . . F 5 38.698 -22.28 0.975 1 77.37 ? O4 NAG 2000 D 1 HETATM 12 O O5 NAG . . . F 5 39.77 -20.917 4.193 1 76.49 ? O5 NAG 2000 D 1 HETATM 13 O O6 NAG . . . F 5 39.609 -18.541 2.788 1 77.37 ? O6 NAG 2000 D 1 HETATM 14 O O7 NAG . . . F 5 41.842 -25.304 5.595 1 76.99 ? O7 NAG 2000 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #