data_8W8A # _model_server_result.job_id bv7MW9rhmAgiA8KI4hSIFA _model_server_result.datetime_utc '2024-11-04 23:13:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8W8A # _exptl.entry_id 8W8A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 218.295 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-4-[(2S)-2-phenylbutyl]-1,3-oxazolidin-2-imine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 23 N CYS 22 1_555 D SG CYS 97 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? disulf ? disulf2 D SG CYS 100 N CYS 99 1_555 D SG CYS 108 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? disulf ? disulf3 E SG CYS 96 R CYS 96 1_555 E SG CYS 182 R CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? # _chem_comp.formula 'C13 H18 N2 O' _chem_comp.formula_weight 218.295 _chem_comp.id T5U _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-4-[(2S)-2-phenylbutyl]-1,3-oxazolidin-2-imine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RO5256390 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N03 C13 T5U doub 290 n n C13 O01 T5U sing 291 n n C13 N02 T5U sing 292 n n O01 C09 T5U sing 293 n n N02 C06 T5U sing 294 n n C09 C06 T5U sing 295 n n C06 C05 T5U sing 296 n n C15 C12 T5U doub 297 n y C15 C16 T5U sing 298 n y C12 C08 T5U sing 299 n y C05 C04 T5U sing 300 n n C16 C14 T5U doub 301 n y C08 C04 T5U sing 302 n n C08 C11 T5U doub 303 n y C04 C07 T5U sing 304 n n C14 C11 T5U sing 305 n y C07 C10 T5U sing 306 n n C12 H1 T5U sing 307 n n C16 H2 T5U sing 308 n n C14 H3 T5U sing 309 n n C04 H4 T5U sing 310 n n C05 H5 T5U sing 311 n n C05 H6 T5U sing 312 n n C06 H7 T5U sing 313 n n C07 H8 T5U sing 314 n n C07 H9 T5U sing 315 n n C09 H10 T5U sing 316 n n C09 H11 T5U sing 317 n n C10 H12 T5U sing 318 n n C10 H13 T5U sing 319 n n C10 H14 T5U sing 320 n n C11 H15 T5U sing 321 n n C15 H16 T5U sing 322 n n N03 H17 T5U sing 323 n n N02 H19 T5U sing 324 n n # _atom_sites.entry_id 8W8A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 T5U R 1 401 401 T5U RO6 . G 7 HOH R 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 T5U . . . F 6 123.98 125.666 154.244 1 66.12 ? C12 T5U 401 R 1 HETATM 2 C C16 T5U . . . F 6 125.336 127.455 155.14 1 66.12 ? C16 T5U 401 R 1 HETATM 3 C C14 T5U . . . F 6 124.561 127.433 156.291 1 66.12 ? C14 T5U 401 R 1 HETATM 4 C C13 T5U . . . F 6 120.33 123.137 151.84 1 66.12 ? C13 T5U 401 R 1 HETATM 5 C C04 T5U . . . F 6 122.051 124.675 155.554 1 66.12 ? C04 T5U 401 R 1 HETATM 6 C C05 T5U . . . F 6 120.799 125.061 154.717 1 66.12 ? C05 T5U 401 R 1 HETATM 7 C C06 T5U . . . F 6 120.138 123.909 153.95 1 66.12 ? C06 T5U 401 R 1 HETATM 8 C C07 T5U . . . F 6 121.669 124.533 157.049 1 66.12 ? C07 T5U 401 R 1 HETATM 9 C C08 T5U . . . F 6 123.196 125.633 155.392 1 66.12 ? C08 T5U 401 R 1 HETATM 10 C C09 T5U . . . F 6 118.901 124.335 153.086 1 66.12 ? C09 T5U 401 R 1 HETATM 11 C C10 T5U . . . F 6 122.414 123.423 157.782 1 66.12 ? C10 T5U 401 R 1 HETATM 12 C C11 T5U . . . F 6 123.507 126.536 156.413 1 66.12 ? C11 T5U 401 R 1 HETATM 13 C C15 T5U . . . F 6 125.036 126.564 154.119 1 66.12 ? C15 T5U 401 R 1 HETATM 14 N N02 T5U . . . F 6 121.024 123.224 152.985 1 66.12 ? N02 T5U 401 R 1 HETATM 15 N N03 T5U . . . F 6 120.716 122.592 150.662 1 66.12 ? N03 T5U 401 R 1 HETATM 16 O O01 T5U . . . F 6 119.061 123.665 151.862 1 66.12 ? O01 T5U 401 R 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #