data_8W8R # _model_server_result.job_id 8IeI5W82baphzd0kf-LsNQ _model_server_result.datetime_utc '2025-03-05 22:10:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 8W8R # _exptl.entry_id 8W8R _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 311.325 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-methylpyridin-2-yl)-3-[3-(trifluoromethyl)phenyl]thiourea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W8R _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 104 R CYS 104 1_555 C SG CYS 182 R CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 D SG CYS 59 S CYS 22 1_555 D SG CYS 133 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 D SG CYS 197 S CYS 159 1_555 D SG CYS 267 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C14 H12 F3 N3 S' _chem_comp.formula_weight 311.325 _chem_comp.id U7D _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-methylpyridin-2-yl)-3-[3-(trifluoromethyl)phenyl]thiourea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CHEMBL2134995 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F02 C14 U7D sing 356 n n F01 C14 U7D sing 357 n n F03 C14 U7D sing 358 n n C14 C12 U7D sing 359 n n C12 C11 U7D doub 360 n y C12 C13 U7D sing 361 n y C11 C10 U7D sing 362 n y C13 C08 U7D doub 363 n y C10 C09 U7D doub 364 n y C08 C09 U7D sing 365 n y C08 N03 U7D sing 366 n n N03 C07 U7D sing 367 n n N01 C02 U7D doub 368 n y N01 C03 U7D sing 369 n y N02 C07 U7D sing 370 n n N02 C03 U7D sing 371 n n C07 S01 U7D doub 372 n n C02 C01 U7D sing 373 n y C03 C04 U7D doub 374 n y C01 C05 U7D doub 375 n y C04 C05 U7D sing 376 n y C05 C06 U7D sing 377 n n C10 H1 U7D sing 378 n n C11 H2 U7D sing 379 n n C13 H3 U7D sing 380 n n C01 H4 U7D sing 381 n n C02 H5 U7D sing 382 n n N02 H6 U7D sing 383 n n N03 H7 U7D sing 384 n n C04 H8 U7D sing 385 n n C06 H9 U7D sing 386 n n C06 H10 U7D sing 387 n n C06 H11 U7D sing 388 n n C09 H12 U7D sing 389 n n # _atom_sites.entry_id 8W8R _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 U7D R 1 601 501 U7D FFF . G 6 U7D R 1 602 502 U7D FFF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 U7D . . . F 6 57.943 88.349 104.076 1 153.31 ? C10 U7D 601 R 1 HETATM 2 C C11 U7D . . . F 6 57.777 88.726 102.753 1 152.01 ? C11 U7D 601 R 1 HETATM 3 C C12 U7D . . . F 6 56.512 89.025 102.276 1 153.47 ? C12 U7D 601 R 1 HETATM 4 C C13 U7D . . . F 6 55.417 88.951 103.119 1 154.03 ? C13 U7D 601 R 1 HETATM 5 C C14 U7D . . . F 6 56.315 89.443 100.822 1 153.96 ? C14 U7D 601 R 1 HETATM 6 C C01 U7D . . . F 6 53.03 94.483 107.326 1 153.51 ? C01 U7D 601 R 1 HETATM 7 N N01 U7D . . . F 6 53.165 92.955 105.486 1 154.09 ? N01 U7D 601 R 1 HETATM 8 S S01 U7D . . . F 6 52.616 89.616 106.874 1 154.31 ? S01 U7D 601 R 1 HETATM 9 C C02 U7D . . . F 6 52.7 94.071 106.045 1 153.09 ? C02 U7D 601 R 1 HETATM 10 N N02 U7D . . . F 6 54.513 90.989 105.635 1 154.16 ? N02 U7D 601 R 1 HETATM 11 C C03 U7D . . . F 6 53.991 92.21 106.222 1 154.68 ? C03 U7D 601 R 1 HETATM 12 N N03 U7D . . . F 6 54.428 88.498 105.315 1 154.31 ? N03 U7D 601 R 1 HETATM 13 C C04 U7D . . . F 6 54.381 92.54 107.512 1 154.3 ? C04 U7D 601 R 1 HETATM 14 C C05 U7D . . . F 6 53.884 93.698 108.064 1 154.09 ? C05 U7D 601 R 1 HETATM 15 C C06 U7D . . . F 6 54.276 94.111 109.481 1 153.24 ? C06 U7D 601 R 1 HETATM 16 C C07 U7D . . . F 6 53.89 89.706 105.913 1 154.3 ? C07 U7D 601 R 1 HETATM 17 C C08 U7D . . . F 6 55.583 88.575 104.441 1 154.02 ? C08 U7D 601 R 1 HETATM 18 C C09 U7D . . . F 6 56.847 88.274 104.92 1 153.91 ? C09 U7D 601 R 1 HETATM 19 F F01 U7D . . . F 6 54.999 89.306 100.488 1 154.24 ? F01 U7D 601 R 1 HETATM 20 F F02 U7D . . . F 6 57.079 88.656 100.01 1 153.75 ? F02 U7D 601 R 1 HETATM 21 F F03 U7D . . . F 6 56.682 90.749 100.675 1 153.56 ? F03 U7D 601 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #