data_8W92 # _model_server_result.job_id U3TMw5QJt8Jct3UuX7pffg _model_server_result.datetime_utc '2024-10-19 15:32:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8w92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 8W92 # _exptl.entry_id 8W92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8W92 _cell.length_a 182.22 _cell.length_b 182.22 _cell.length_c 182.22 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8W92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 28 A GLU 27 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc2 A OE1 GLU 63 A GLU 62 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 A OE2 GLU 63 A GLU 62 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc4 A OE2 GLU 63 A GLU 62 1_555 C FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 A ND1 HIS 66 A HIS 65 1_555 B FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc6 A OD2 ASP 85 A ASP 84 1_555 D FE FE . A FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 A OD2 ASP 85 A ASP 84 1_555 D FE FE . A FE 203 43_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 A OE1 GLN 87 A GLN 86 1_555 D FE FE . A FE 203 18_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc9 A OD1 ASP 132 A ASP 131 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc10 A OD1 ASP 132 A ASP 131 1_555 F CA CA . A CA 205 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc11 A OE1 GLU 135 A GLU 134 1_555 F CA CA . A CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc12 A OE1 GLU 135 A GLU 134 1_555 F CA CA . A CA 205 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc13 B FE FE . A FE 201 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc14 C FE FE . A FE 202 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc15 C FE FE . A FE 202 1_555 H O HOH . A HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc16 F CA CA . A CA 205 1_555 H O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc17 F CA CA . A CA 205 1_555 H O HOH . A HOH 306 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc18 F CA CA . A CA 205 1_555 H O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc19 F CA CA . A CA 205 1_555 H O HOH . A HOH 323 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8W92 _atom_sites.fract_transf_matrix[1][1] 0.005488 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 201 1 FE FE . C 2 FE A 1 202 2 FE FE . D 2 FE A 1 203 3 FE FE . E 3 CA A 1 204 1 CA CA . F 3 CA A 1 205 2 CA CA . G 3 CA A 1 206 3 CA CA . H 4 HOH A 1 301 92 HOH HOH . H 4 HOH A 2 302 2 HOH HOH . H 4 HOH A 3 303 58 HOH HOH . H 4 HOH A 4 304 60 HOH HOH . H 4 HOH A 5 305 49 HOH HOH . H 4 HOH A 6 306 26 HOH HOH . H 4 HOH A 7 307 32 HOH HOH . H 4 HOH A 8 308 33 HOH HOH . H 4 HOH A 9 309 94 HOH HOH . H 4 HOH A 10 310 99 HOH HOH . H 4 HOH A 11 311 7 HOH HOH . H 4 HOH A 12 312 44 HOH HOH . H 4 HOH A 13 313 62 HOH HOH . H 4 HOH A 14 314 108 HOH HOH . H 4 HOH A 15 315 47 HOH HOH . H 4 HOH A 16 316 52 HOH HOH . H 4 HOH A 17 317 104 HOH HOH . H 4 HOH A 18 318 6 HOH HOH . H 4 HOH A 19 319 45 HOH HOH . H 4 HOH A 20 320 29 HOH HOH . H 4 HOH A 21 321 68 HOH HOH . H 4 HOH A 22 322 24 HOH HOH . H 4 HOH A 23 323 54 HOH HOH . H 4 HOH A 24 324 89 HOH HOH . H 4 HOH A 25 325 14 HOH HOH . H 4 HOH A 26 326 10 HOH HOH . H 4 HOH A 27 327 3 HOH HOH . H 4 HOH A 28 328 82 HOH HOH . H 4 HOH A 29 329 4 HOH HOH . H 4 HOH A 30 330 67 HOH HOH . H 4 HOH A 31 331 22 HOH HOH . H 4 HOH A 32 332 57 HOH HOH . H 4 HOH A 33 333 43 HOH HOH . H 4 HOH A 34 334 66 HOH HOH . H 4 HOH A 35 335 11 HOH HOH . H 4 HOH A 36 336 106 HOH HOH . H 4 HOH A 37 337 100 HOH HOH . H 4 HOH A 38 338 30 HOH HOH . H 4 HOH A 39 339 56 HOH HOH . H 4 HOH A 40 340 95 HOH HOH . H 4 HOH A 41 341 46 HOH HOH . H 4 HOH A 42 342 13 HOH HOH . H 4 HOH A 43 343 35 HOH HOH . H 4 HOH A 44 344 8 HOH HOH . H 4 HOH A 45 345 23 HOH HOH . H 4 HOH A 46 346 72 HOH HOH . H 4 HOH A 47 347 42 HOH HOH . H 4 HOH A 48 348 15 HOH HOH . H 4 HOH A 49 349 28 HOH HOH . H 4 HOH A 50 350 19 HOH HOH . H 4 HOH A 51 351 21 HOH HOH . H 4 HOH A 52 352 63 HOH HOH . H 4 HOH A 53 353 39 HOH HOH . H 4 HOH A 54 354 48 HOH HOH . H 4 HOH A 55 355 20 HOH HOH . H 4 HOH A 56 356 51 HOH HOH . H 4 HOH A 57 357 18 HOH HOH . H 4 HOH A 58 358 103 HOH HOH . H 4 HOH A 59 359 37 HOH HOH . H 4 HOH A 60 360 55 HOH HOH . H 4 HOH A 61 361 71 HOH HOH . H 4 HOH A 62 362 25 HOH HOH . H 4 HOH A 63 363 64 HOH HOH . H 4 HOH A 64 364 78 HOH HOH . H 4 HOH A 65 365 59 HOH HOH . H 4 HOH A 66 366 75 HOH HOH . H 4 HOH A 67 367 31 HOH HOH . H 4 HOH A 68 368 69 HOH HOH . H 4 HOH A 69 369 65 HOH HOH . H 4 HOH A 70 370 81 HOH HOH . H 4 HOH A 71 371 16 HOH HOH . H 4 HOH A 72 372 74 HOH HOH . H 4 HOH A 73 373 5 HOH HOH . H 4 HOH A 74 374 38 HOH HOH . H 4 HOH A 75 375 1 HOH HOH . H 4 HOH A 76 376 9 HOH HOH . H 4 HOH A 77 377 77 HOH HOH . H 4 HOH A 78 378 70 HOH HOH . H 4 HOH A 79 379 87 HOH HOH . H 4 HOH A 80 380 34 HOH HOH . H 4 HOH A 81 381 111 HOH HOH . H 4 HOH A 82 382 40 HOH HOH . H 4 HOH A 83 383 50 HOH HOH . H 4 HOH A 84 384 73 HOH HOH . H 4 HOH A 85 385 41 HOH HOH . H 4 HOH A 86 386 36 HOH HOH . H 4 HOH A 87 387 90 HOH HOH . H 4 HOH A 88 388 88 HOH HOH . H 4 HOH A 89 389 12 HOH HOH . H 4 HOH A 90 390 53 HOH HOH . H 4 HOH A 91 391 79 HOH HOH . H 4 HOH A 92 392 101 HOH HOH . H 4 HOH A 93 393 110 HOH HOH . H 4 HOH A 94 394 85 HOH HOH . H 4 HOH A 95 395 80 HOH HOH . H 4 HOH A 96 396 109 HOH HOH . H 4 HOH A 97 397 107 HOH HOH . H 4 HOH A 98 398 17 HOH HOH . H 4 HOH A 99 399 102 HOH HOH . H 4 HOH A 100 400 93 HOH HOH . H 4 HOH A 101 401 61 HOH HOH . H 4 HOH A 102 402 86 HOH HOH . H 4 HOH A 103 403 84 HOH HOH . H 4 HOH A 104 404 27 HOH HOH . H 4 HOH A 105 405 97 HOH HOH . H 4 HOH A 106 406 91 HOH HOH . H 4 HOH A 107 407 98 HOH HOH . H 4 HOH A 108 408 83 HOH HOH . H 4 HOH A 109 409 76 HOH HOH . H 4 HOH A 110 410 96 HOH HOH . H 4 HOH A 111 411 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 28.54 _atom_site.Cartn_y 28.54 _atom_site.Cartn_z 28.54 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 72.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #