data_8W9I
#
_model_server_result.job_id            Hj5duolL6lDXcmBUzYs6vw 
_model_server_result.datetime_utc      '2025-02-20 01:21:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w9i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":604}' 
#
_entry.id    8W9I 
#
_exptl.entry_id    8W9I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W9I 
_cell.length_a            74.584 
_cell.length_b            102.622 
_cell.length_c            194.084 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W9I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 316 A ALA 308 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc2 A O GLN 318 A GLN 310 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc3 A O VAL 321 A VAL 313 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc4 B O ALA 316 B ALA 308 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc5 B O GLN 318 B GLN 310 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc6 B O VAL 321 B VAL 313 1_555 I MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc7 B O PRO 341 B PRO 333 1_555 J MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc8 B OG SER 343 B SER 335 1_555 J MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc9 B OE2 GLU 372 B GLU 364 1_555 J MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8W9I 
_atom_sites.fract_transf_matrix[1][1]    0.013408 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009744 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005152 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 W2H A 1 601 1 W2H XXX . 
D 3 MG A 1 602 1 MG MG . 
E 4 EDO A 1 603 3 EDO EDO . 
F 4 EDO A 1 604 4 EDO EDO . 
G 4 EDO A 1 605 5 EDO EDO . 
H 2 W2H B 1 601 2 W2H XXX . 
I 3 MG B 1 602 2 MG MG . 
J 3 MG B 1 603 3 MG MG . 
K 4 EDO B 1 604 1 EDO EDO . 
L 4 EDO B 1 605 2 EDO EDO . 
M 4 EDO B 1 606 6 EDO EDO . 
N 5 HOH A 1 701 79 HOH HOH . 
N 5 HOH A 2 702 140 HOH HOH . 
N 5 HOH A 3 703 25 HOH HOH . 
N 5 HOH A 4 704 118 HOH HOH . 
N 5 HOH A 5 705 50 HOH HOH . 
N 5 HOH A 6 706 78 HOH HOH . 
N 5 HOH A 7 707 109 HOH HOH . 
N 5 HOH A 8 708 106 HOH HOH . 
N 5 HOH A 9 709 107 HOH HOH . 
N 5 HOH A 10 710 13 HOH HOH . 
N 5 HOH A 11 711 3 HOH HOH . 
N 5 HOH A 12 712 80 HOH HOH . 
N 5 HOH A 13 713 48 HOH HOH . 
N 5 HOH A 14 714 44 HOH HOH . 
N 5 HOH A 15 715 16 HOH HOH . 
N 5 HOH A 16 716 93 HOH HOH . 
N 5 HOH A 17 717 23 HOH HOH . 
N 5 HOH A 18 718 133 HOH HOH . 
N 5 HOH A 19 719 47 HOH HOH . 
N 5 HOH A 20 720 83 HOH HOH . 
N 5 HOH A 21 721 94 HOH HOH . 
N 5 HOH A 22 722 27 HOH HOH . 
N 5 HOH A 23 723 68 HOH HOH . 
N 5 HOH A 24 724 60 HOH HOH . 
N 5 HOH A 25 725 35 HOH HOH . 
N 5 HOH A 26 726 111 HOH HOH . 
N 5 HOH A 27 727 7 HOH HOH . 
N 5 HOH A 28 728 61 HOH HOH . 
N 5 HOH A 29 729 100 HOH HOH . 
N 5 HOH A 30 730 32 HOH HOH . 
N 5 HOH A 31 731 98 HOH HOH . 
N 5 HOH A 32 732 112 HOH HOH . 
N 5 HOH A 33 733 139 HOH HOH . 
N 5 HOH A 34 734 34 HOH HOH . 
N 5 HOH A 35 735 97 HOH HOH . 
N 5 HOH A 36 736 90 HOH HOH . 
N 5 HOH A 37 737 105 HOH HOH . 
N 5 HOH A 38 738 86 HOH HOH . 
N 5 HOH A 39 739 99 HOH HOH . 
N 5 HOH A 40 740 82 HOH HOH . 
N 5 HOH A 41 741 96 HOH HOH . 
N 5 HOH A 42 742 33 HOH HOH . 
N 5 HOH A 43 743 19 HOH HOH . 
N 5 HOH A 44 744 116 HOH HOH . 
N 5 HOH A 45 745 115 HOH HOH . 
N 5 HOH A 46 746 132 HOH HOH . 
N 5 HOH A 47 747 9 HOH HOH . 
N 5 HOH A 48 748 110 HOH HOH . 
N 5 HOH A 49 749 22 HOH HOH . 
N 5 HOH A 50 750 11 HOH HOH . 
N 5 HOH A 51 751 62 HOH HOH . 
N 5 HOH A 52 752 65 HOH HOH . 
N 5 HOH A 53 753 30 HOH HOH . 
N 5 HOH A 54 754 113 HOH HOH . 
N 5 HOH A 55 755 134 HOH HOH . 
N 5 HOH A 56 756 36 HOH HOH . 
N 5 HOH A 57 757 8 HOH HOH . 
N 5 HOH A 58 758 135 HOH HOH . 
N 5 HOH A 59 759 102 HOH HOH . 
N 5 HOH A 60 760 38 HOH HOH . 
N 5 HOH A 61 761 91 HOH HOH . 
N 5 HOH A 62 762 2 HOH HOH . 
N 5 HOH A 63 763 117 HOH HOH . 
N 5 HOH A 64 764 6 HOH HOH . 
N 5 HOH A 65 765 141 HOH HOH . 
N 5 HOH A 66 766 73 HOH HOH . 
N 5 HOH A 67 767 136 HOH HOH . 
N 5 HOH A 68 768 137 HOH HOH . 
N 5 HOH A 69 769 67 HOH HOH . 
N 5 HOH A 70 770 138 HOH HOH . 
N 5 HOH A 71 771 101 HOH HOH . 
N 5 HOH A 72 772 81 HOH HOH . 
N 5 HOH A 73 773 84 HOH HOH . 
N 5 HOH A 74 774 63 HOH HOH . 
N 5 HOH A 75 775 59 HOH HOH . 
N 5 HOH A 76 776 108 HOH HOH . 
N 5 HOH A 77 777 69 HOH HOH . 
N 5 HOH A 78 778 104 HOH HOH . 
N 5 HOH A 79 779 114 HOH HOH . 
N 5 HOH A 80 780 77 HOH HOH . 
N 5 HOH A 81 781 92 HOH HOH . 
N 5 HOH A 82 782 72 HOH HOH . 
N 5 HOH A 83 783 70 HOH HOH . 
N 5 HOH A 84 784 103 HOH HOH . 
N 5 HOH A 85 785 71 HOH HOH . 
O 5 HOH B 1 701 53 HOH HOH . 
O 5 HOH B 2 702 45 HOH HOH . 
O 5 HOH B 3 703 122 HOH HOH . 
O 5 HOH B 4 704 64 HOH HOH . 
O 5 HOH B 5 705 49 HOH HOH . 
O 5 HOH B 6 706 43 HOH HOH . 
O 5 HOH B 7 707 40 HOH HOH . 
O 5 HOH B 8 708 37 HOH HOH . 
O 5 HOH B 9 709 88 HOH HOH . 
O 5 HOH B 10 710 14 HOH HOH . 
O 5 HOH B 11 711 46 HOH HOH . 
O 5 HOH B 12 712 130 HOH HOH . 
O 5 HOH B 13 713 10 HOH HOH . 
O 5 HOH B 14 714 85 HOH HOH . 
O 5 HOH B 15 715 76 HOH HOH . 
O 5 HOH B 16 716 39 HOH HOH . 
O 5 HOH B 17 717 119 HOH HOH . 
O 5 HOH B 18 718 31 HOH HOH . 
O 5 HOH B 19 719 75 HOH HOH . 
O 5 HOH B 20 720 89 HOH HOH . 
O 5 HOH B 21 721 120 HOH HOH . 
O 5 HOH B 22 722 15 HOH HOH . 
O 5 HOH B 23 723 12 HOH HOH . 
O 5 HOH B 24 724 74 HOH HOH . 
O 5 HOH B 25 725 17 HOH HOH . 
O 5 HOH B 26 726 24 HOH HOH . 
O 5 HOH B 27 727 26 HOH HOH . 
O 5 HOH B 28 728 4 HOH HOH . 
O 5 HOH B 29 729 18 HOH HOH . 
O 5 HOH B 30 730 41 HOH HOH . 
O 5 HOH B 31 731 29 HOH HOH . 
O 5 HOH B 32 732 51 HOH HOH . 
O 5 HOH B 33 733 129 HOH HOH . 
O 5 HOH B 34 734 42 HOH HOH . 
O 5 HOH B 35 735 56 HOH HOH . 
O 5 HOH B 36 736 5 HOH HOH . 
O 5 HOH B 37 737 124 HOH HOH . 
O 5 HOH B 38 738 21 HOH HOH . 
O 5 HOH B 39 739 123 HOH HOH . 
O 5 HOH B 40 740 28 HOH HOH . 
O 5 HOH B 41 741 95 HOH HOH . 
O 5 HOH B 42 742 57 HOH HOH . 
O 5 HOH B 43 743 125 HOH HOH . 
O 5 HOH B 44 744 126 HOH HOH . 
O 5 HOH B 45 745 55 HOH HOH . 
O 5 HOH B 46 746 131 HOH HOH . 
O 5 HOH B 47 747 66 HOH HOH . 
O 5 HOH B 48 748 121 HOH HOH . 
O 5 HOH B 49 749 58 HOH HOH . 
O 5 HOH B 50 750 128 HOH HOH . 
O 5 HOH B 51 751 52 HOH HOH . 
O 5 HOH B 52 752 54 HOH HOH . 
O 5 HOH B 53 753 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 4 -12.266 3.197 33.539 1 58.59 0 C1 EDO 604 B 1 
HETATM 2 O O1 EDO . . . K 4 -13.243 4.16 33.168 1 58.23 0 O1 EDO 604 B 1 
HETATM 3 C C2 EDO . . . K 4 -11.288 2.863 32.461 1 56.38 0 C2 EDO 604 B 1 
HETATM 4 O O2 EDO . . . K 4 -9.951 3.246 32.751 1 54.58 0 O2 EDO 604 B 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           4 
#