data_8W9M
#
_model_server_result.job_id            XD_ii_NNkOjWAFl_pVXMMw 
_model_server_result.datetime_utc      '2025-07-31 22:46:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8w9m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    8W9M 
#
_exptl.entry_id    8W9M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8W9M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8W9M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OG SER 49 C SER 49 1_555 F MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc2 C OE1 GLN 85 C GLN 85 1_555 F MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc3 E O2G ATP . C ATP 701 1_555 F MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc4 E O2B ATP . C ATP 701 1_555 F MG MG . C MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? 
metalc ? metalc5 D OG SER 64 D SER 64 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 D OE1 GLN 100 D GLN 100 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc7 G O1G ATP . D ATP 301 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc8 G O3B ATP . D ATP 301 1_555 H MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8W9M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 ATP C 1 701 301 ATP ATP . 
F 5 MG C 1 702 302 MG MG . 
G 4 ATP D 1 301 301 ATP ATP . 
H 5 MG D 1 302 302 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . E 4 95.275 105.93 136.738 1 29.21 ? PG ATP 701 C 1 
HETATM 2 O O1G ATP . . . E 4 94.677 105.428 138.007 1 29.21 ? O1G ATP 701 C 1 
HETATM 3 O O2G ATP . . . E 4 95.873 104.824 135.864 1 29.21 ? O2G ATP 701 C 1 
HETATM 4 O O3G ATP . . . E 4 94.312 106.771 135.898 1 29.21 ? O3G ATP 701 C 1 
HETATM 5 P PB ATP . . . E 4 97.725 107.047 138.038 1 29.21 ? PB ATP 701 C 1 
HETATM 6 O O1B ATP . . . E 4 97.283 107.333 139.416 1 29.21 ? O1B ATP 701 C 1 
HETATM 7 O O2B ATP . . . E 4 98.592 105.802 137.863 1 29.21 ? O2B ATP 701 C 1 
HETATM 8 O O3B ATP . . . E 4 96.499 106.908 137.04 1 29.21 ? O3B ATP 701 C 1 
HETATM 9 P PA ATP . . . E 4 99.876 108.494 136.606 1 29.21 ? PA ATP 701 C 1 
HETATM 10 O O1A ATP . . . E 4 99.931 107.695 135.365 1 29.21 ? O1A ATP 701 C 1 
HETATM 11 O O2A ATP . . . E 4 101.02 108.228 137.581 1 29.21 ? O2A ATP 701 C 1 
HETATM 12 O O3A ATP . . . E 4 98.517 108.273 137.403 1 29.21 ? O3A ATP 701 C 1 
HETATM 13 O O5' ATP . . . E 4 99.832 110.041 136.296 1 29.21 ? O5' ATP 701 C 1 
HETATM 14 C C5' ATP . . . E 4 100.71 110.965 136.973 1 29.21 ? C5' ATP 701 C 1 
HETATM 15 C C4' ATP . . . E 4 100.125 112.355 136.918 1 29.21 ? C4' ATP 701 C 1 
HETATM 16 O O4' ATP . . . E 4 101.043 113.241 136.244 1 29.21 ? O4' ATP 701 C 1 
HETATM 17 C C3' ATP . . . E 4 98.811 112.491 136.158 1 29.21 ? C3' ATP 701 C 1 
HETATM 18 O O3' ATP . . . E 4 98.039 113.575 136.661 1 29.21 ? O3' ATP 701 C 1 
HETATM 19 C C2' ATP . . . E 4 99.282 112.747 134.725 1 29.21 ? C2' ATP 701 C 1 
HETATM 20 O O2' ATP . . . E 4 98.335 113.51 133.988 1 29.21 ? O2' ATP 701 C 1 
HETATM 21 C C1' ATP . . . E 4 100.561 113.56 134.949 1 29.21 ? C1' ATP 701 C 1 
HETATM 22 N N9 ATP . . . E 4 101.617 113.271 133.985 1 29.21 ? N9 ATP 701 C 1 
HETATM 23 C C8 ATP . . . E 4 102.189 112.052 133.73 1 29.21 ? C8 ATP 701 C 1 
HETATM 24 N N7 ATP . . . E 4 103.12 112.08 132.808 1 29.21 ? N7 ATP 701 C 1 
HETATM 25 C C5 ATP . . . E 4 103.165 113.413 132.428 1 29.21 ? C5 ATP 701 C 1 
HETATM 26 C C6 ATP . . . E 4 103.948 114.106 131.485 1 29.21 ? C6 ATP 701 C 1 
HETATM 27 N N6 ATP . . . E 4 104.877 113.526 130.719 1 29.21 ? N6 ATP 701 C 1 
HETATM 28 N N1 ATP . . . E 4 103.742 115.435 131.353 1 29.21 ? N1 ATP 701 C 1 
HETATM 29 C C2 ATP . . . E 4 102.815 116.021 132.115 1 29.21 ? C2 ATP 701 C 1 
HETATM 30 N N3 ATP . . . E 4 102.019 115.472 133.035 1 29.21 ? N3 ATP 701 C 1 
HETATM 31 C C4 ATP . . . E 4 102.244 114.158 133.146 1 29.21 ? C4 ATP 701 C 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#