data_8WA1 # _model_server_result.job_id kzF2s-y0ie8elvMosBFdCg _model_server_result.datetime_utc '2024-10-11 02:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wa1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1101}' # _entry.id 8WA1 # _exptl.entry_id 8WA1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 22 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WA1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 22 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 101 M CYS 101 1_555 M SG CYS 104 M CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 W SG CYS 101 m CYS 101 1_555 W SG CYS 104 m CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 B OE1 GLU 535 B GLU 535 1_555 X ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc2 B NE2 HIS 536 B HIS 536 1_555 X ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 B OD1 ASP 888 B ASP 888 1_555 X ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc4 B OE2 GLU 889 B GLU 889 1_555 X ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc5 B OG SER 896 B SER 896 1_555 X ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc6 C OD1 ASP 496 C ASP 496 1_555 Y MG MG . C MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc7 C OD2 ASP 496 C ASP 496 1_555 Y MG MG . C MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc8 C OD1 ASP 498 C ASP 498 1_555 Y MG MG . C MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc9 C OD2 ASP 498 C ASP 498 1_555 Y MG MG . C MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc10 C OD1 ASP 500 C ASP 500 1_555 Y MG MG . C MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc11 Y MG MG . C MG 3001 1_555 S O3' A 27 S A -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.793 ? metalc ? metalc12 G NE2 HIS 77 G HIS 77 1_555 Z FE FE . G FE 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc13 G NE2 HIS 130 G HIS 130 1_555 Z FE FE . G FE 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc14 G OD2 ASP 214 G ASP 214 1_555 Z FE FE . G FE 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? metalc ? metalc15 G NE2 HIS 218 G HIS 218 1_555 Z FE FE . G FE 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc16 L NE2 HIS 73 L HIS 73 1_555 AA FE FE . L FE 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc17 L NE2 HIS 125 L HIS 125 1_555 AA FE FE . L FE 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc18 L OD2 ASP 224 L ASP 224 1_555 AA FE FE . L FE 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc19 L NE2 HIS 228 L HIS 228 1_555 AA FE FE . L FE 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? hydrog WATSON-CRICK hydrog1 Q N3 DT 21 Q DT 17 1_555 R N1 DA 4 R DA -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 Q O4 DT 21 Q DT 17 1_555 R N6 DA 4 R DA -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 Q N3 DT 22 Q DT 18 1_555 R N1 DA 3 R DA -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 Q O4 DT 22 Q DT 18 1_555 R N6 DA 3 R DA -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 Q N1 DG 23 Q DG 19 1_555 R N3 DC 2 R DC -3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 Q N2 DG 23 Q DG 19 1_555 R O2 DC 2 R DC -3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 Q O6 DG 23 Q DG 19 1_555 R N4 DC 2 R DC -3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 Q N3 DT 24 Q DT 20 1_555 R N1 DA 1 R DA -4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 Q O4 DT 24 Q DT 20 1_555 R N6 DA 1 R DA -4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-A PAIR' hydrog10 R N3 DT 6 R DT 1 1_555 S N1 A 27 S A -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 R N1 DG 7 R DG 2 1_555 S N3 C 26 S C -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 R N2 DG 7 R DG 2 1_555 S O2 C 26 S C -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 R O6 DG 7 R DG 2 1_555 S N4 C 26 S C -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 R N3 DC 8 R DC 3 1_555 S N1 G 25 S G -3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 R N4 DC 8 R DC 3 1_555 S O6 G 25 S G -3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 R O2 DC 8 R DC 3 1_555 S N2 G 25 S G -3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 R N1 DG 9 R DG 4 1_555 S N3 C 24 S C -4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 R N2 DG 9 R DG 4 1_555 S O2 C 24 S C -4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 R O6 DG 9 R DG 4 1_555 S N4 C 24 S C -4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 R N1 DA 10 R DA 5 1_555 S N3 U 23 S U -5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 R N6 DA 10 R DA 5 1_555 S O4 U 23 S U -5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 R N3 DT 11 R DT 6 1_555 S N1 A 22 S A -6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 R O4 DT 11 R DT 6 1_555 S N6 A 22 S A -6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 R N3 DT 12 R DT 7 1_555 S N1 A 21 S A -7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 R O4 DT 12 R DT 7 1_555 S N6 A 21 S A -7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 R N1 DA 13 R DA 8 1_555 S N3 U 20 S U -8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 R N6 DA 13 R DA 8 1_555 S O4 U 20 S U -8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 R N3 DC 14 R DC 9 1_555 S N1 G 19 S G -9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 R N4 DC 14 R DC 9 1_555 S O6 G 19 S G -9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 R O2 DC 14 R DC 9 1_555 S N2 G 19 S G -9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8WA1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 22 ZN B 1 1101 1097 ZN ZN . Y 23 MG C 1 3001 3001 MG MG . Z 24 FE G 1 2001 2001 FE FE . AA 24 FE L 1 2001 2001 FE FE . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 22 _atom_site.Cartn_x 246.474 _atom_site.Cartn_y 273.897 _atom_site.Cartn_z 239.912 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 105.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #