data_8WA5 # _model_server_result.job_id 3TDYxUlcku6LglK-wz7QmA _model_server_result.datetime_utc '2024-10-11 04:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wa5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1106}' # _entry.id 8WA5 # _exptl.entry_id 8WA5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WA5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B ND2 ASN 99 B ASN 99 1_555 J C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 146 B ASN 146 1_555 N C1 NAG . B NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 B ND2 ASN 161 B ASN 161 1_555 K C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 B ND2 ASN 193 B ASN 193 1_555 M C1 NAG . B NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 B ND2 ASN 221 B ASN 221 1_555 L C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A O VAL 338 A VAL 338 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc2 A O ALA 339 A ALA 339 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc3 A O VAL 341 A VAL 341 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc4 A OE1 GLU 343 A GLU 343 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc5 A OD2 ASP 385 A ASP 385 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 A O THR 387 A THR 387 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc7 A OD1 ASP 726 A ASP 726 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc8 A O LEU 734 A LEU 734 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc9 A O LYS 735 A LYS 735 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc10 A O LYS 736 A LYS 736 1_555 E K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc11 A O ALA 737 A ALA 737 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc12 A O ALA 737 A ALA 737 1_555 E K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.401 ? metalc ? metalc13 A OD2 ASP 756 A ASP 756 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc14 A OE2 GLU 795 A GLU 795 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc15 A OE1 GLU 820 A GLU 820 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.363 ? metalc ? metalc16 A OE2 GLU 820 A GLU 820 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.472 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 74 n n C1 C10 CLR sing 75 n n C1 H11 CLR sing 76 n n C1 H12 CLR sing 77 n n C2 C3 CLR sing 78 n n C2 H21 CLR sing 79 n n C2 H22 CLR sing 80 n n C3 C4 CLR sing 81 n n C3 O1 CLR sing 82 n n C3 H3 CLR sing 83 n n C4 C5 CLR sing 84 n n C4 H41 CLR sing 85 n n C4 H42 CLR sing 86 n n C5 C6 CLR doub 87 n n C5 C10 CLR sing 88 n n C6 C7 CLR sing 89 n n C6 H6 CLR sing 90 n n C7 C8 CLR sing 91 n n C7 H71 CLR sing 92 n n C7 H72 CLR sing 93 n n C8 C9 CLR sing 94 n n C8 C14 CLR sing 95 n n C8 H8 CLR sing 96 n n C9 C10 CLR sing 97 n n C9 C11 CLR sing 98 n n C9 H9 CLR sing 99 n n C10 C19 CLR sing 100 n n C11 C12 CLR sing 101 n n C11 H111 CLR sing 102 n n C11 H112 CLR sing 103 n n C12 C13 CLR sing 104 n n C12 H121 CLR sing 105 n n C12 H122 CLR sing 106 n n C13 C14 CLR sing 107 n n C13 C17 CLR sing 108 n n C13 C18 CLR sing 109 n n C14 C15 CLR sing 110 n n C14 H14 CLR sing 111 n n C15 C16 CLR sing 112 n n C15 H151 CLR sing 113 n n C15 H152 CLR sing 114 n n C16 C17 CLR sing 115 n n C16 H161 CLR sing 116 n n C16 H162 CLR sing 117 n n C17 C20 CLR sing 118 n n C17 H17 CLR sing 119 n n C18 H181 CLR sing 120 n n C18 H182 CLR sing 121 n n C18 H183 CLR sing 122 n n C19 H191 CLR sing 123 n n C19 H192 CLR sing 124 n n C19 H193 CLR sing 125 n n C20 C21 CLR sing 126 n n C20 C22 CLR sing 127 n n C20 H20 CLR sing 128 n n C21 H211 CLR sing 129 n n C21 H212 CLR sing 130 n n C21 H213 CLR sing 131 n n C22 C23 CLR sing 132 n n C22 H221 CLR sing 133 n n C22 H222 CLR sing 134 n n C23 C24 CLR sing 135 n n C23 H231 CLR sing 136 n n C23 H232 CLR sing 137 n n C24 C25 CLR sing 138 n n C24 H241 CLR sing 139 n n C24 H242 CLR sing 140 n n C25 C26 CLR sing 141 n n C25 C27 CLR sing 142 n n C25 H25 CLR sing 143 n n C26 H261 CLR sing 144 n n C26 H262 CLR sing 145 n n C26 H263 CLR sing 146 n n C27 H271 CLR sing 147 n n C27 H272 CLR sing 148 n n C27 H273 CLR sing 149 n n O1 H1 CLR sing 150 n n # _atom_sites.entry_id 8WA5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 1101 1038 K K . D 3 K A 1 1102 1039 K K . E 3 K A 1 1103 1040 K K . F 4 ALF A 1 1104 1041 ALF ALF . G 5 MG A 1 1105 1042 MG MG . H 6 CLR A 1 1106 302 CLR CLR . I 7 PCW B 1 301 301 PCW PCW . J 8 NAG B 1 302 303 NAG NAG . K 8 NAG B 1 303 305 NAG NAG . L 8 NAG B 1 304 306 NAG NAG . M 8 NAG B 1 305 307 NAG NAG . N 8 NAG B 1 306 308 NAG NAG . O 9 HOH A 1 1201 3 HOH HOH . O 9 HOH A 2 1202 1 HOH HOH . O 9 HOH A 3 1203 4 HOH HOH . O 9 HOH A 4 1204 7 HOH HOH . O 9 HOH A 5 1205 2 HOH HOH . O 9 HOH A 6 1206 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 6 191.927 183.354 177.17 1 51.6 ? C1 CLR 1106 A 1 HETATM 2 C C2 CLR . . . H 6 191.549 183.601 175.714 1 51.6 ? C2 CLR 1106 A 1 HETATM 3 C C3 CLR . . . H 6 190.045 183.591 175.534 1 51.6 ? C3 CLR 1106 A 1 HETATM 4 C C4 CLR . . . H 6 189.402 184.615 176.464 1 51.6 ? C4 CLR 1106 A 1 HETATM 5 C C5 CLR . . . H 6 189.808 184.406 177.898 1 51.6 ? C5 CLR 1106 A 1 HETATM 6 C C6 CLR . . . H 6 188.887 184.148 178.823 1 51.6 ? C6 CLR 1106 A 1 HETATM 7 C C7 CLR . . . H 6 189.172 183.964 180.274 1 51.6 ? C7 CLR 1106 A 1 HETATM 8 C C8 CLR . . . H 6 190.59 184.386 180.636 1 51.6 ? C8 CLR 1106 A 1 HETATM 9 C C9 CLR . . . H 6 191.588 183.839 179.607 1 51.6 ? C9 CLR 1106 A 1 HETATM 10 C C10 CLR . . . H 6 191.302 184.35 178.171 1 51.6 ? C10 CLR 1106 A 1 HETATM 11 C C11 CLR . . . H 6 193.039 184.074 180.054 1 51.6 ? C11 CLR 1106 A 1 HETATM 12 C C12 CLR . . . H 6 193.342 183.682 181.504 1 51.6 ? C12 CLR 1106 A 1 HETATM 13 C C13 CLR . . . H 6 192.354 184.308 182.493 1 51.6 ? C13 CLR 1106 A 1 HETATM 14 C C14 CLR . . . H 6 190.965 183.867 182.011 1 51.6 ? C14 CLR 1106 A 1 HETATM 15 C C15 CLR . . . H 6 190.038 184.159 183.178 1 51.6 ? C15 CLR 1106 A 1 HETATM 16 C C16 CLR . . . H 6 190.883 183.697 184.377 1 51.6 ? C16 CLR 1106 A 1 HETATM 17 C C17 CLR . . . H 6 192.378 183.751 183.945 1 51.6 ? C17 CLR 1106 A 1 HETATM 18 C C18 CLR . . . H 6 192.496 185.834 182.517 1 51.6 ? C18 CLR 1106 A 1 HETATM 19 C C19 CLR . . . H 6 191.881 185.754 177.943 1 51.6 ? C19 CLR 1106 A 1 HETATM 20 C C20 CLR . . . H 6 193.261 184.448 184.994 1 51.6 ? C20 CLR 1106 A 1 HETATM 21 C C21 CLR . . . H 6 194.73 184.037 184.913 1 51.6 ? C21 CLR 1106 A 1 HETATM 22 C C22 CLR . . . H 6 192.713 184.2 186.409 1 51.6 ? C22 CLR 1106 A 1 HETATM 23 C C23 CLR . . . H 6 192.304 185.45 187.182 1 51.6 ? C23 CLR 1106 A 1 HETATM 24 C C24 CLR . . . H 6 191.269 185.149 188.261 1 51.6 ? C24 CLR 1106 A 1 HETATM 25 C C25 CLR . . . H 6 190.301 186.295 188.565 1 51.6 ? C25 CLR 1106 A 1 HETATM 26 C C26 CLR . . . H 6 189.628 186.768 187.28 1 51.6 ? C26 CLR 1106 A 1 HETATM 27 C C27 CLR . . . H 6 189.248 185.904 189.598 1 51.6 ? C27 CLR 1106 A 1 HETATM 28 O O1 CLR . . . H 6 189.756 183.862 174.179 1 51.6 ? O1 CLR 1106 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #