data_8WA5
#
_model_server_result.job_id            SdKbzI5yh4ClG0HCkEXqow 
_model_server_result.datetime_utc      '2024-10-11 04:29:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wa5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":306}' 
#
_entry.id    8WA5 
#
_exptl.entry_id    8WA5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WA5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WA5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 K N N 
? 8 L N N 
? 8 M N N 
? 8 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 131 B CYS 131 1_555 B SG CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 162 B CYS 162 1_555 B SG CYS 178 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 201 B CYS 201 1_555 B SG CYS 262 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 B ND2 ASN 99 B ASN 99 1_555 J C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 B ND2 ASN 146 B ASN 146 1_555 N C1 NAG . B NAG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 B ND2 ASN 161 B ASN 161 1_555 K C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 B ND2 ASN 193 B ASN 193 1_555 M C1 NAG . B NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 B ND2 ASN 221 B ASN 221 1_555 L C1 NAG . B NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
metalc ? metalc1 A O VAL 338 A VAL 338 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
metalc ? metalc2 A O ALA 339 A ALA 339 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc3 A O VAL 341 A VAL 341 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc4 A OE1 GLU 343 A GLU 343 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? 
metalc ? metalc5 A OD2 ASP 385 A ASP 385 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc6 A O THR 387 A THR 387 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc7 A OD1 ASP 726 A ASP 726 1_555 G MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc8 A O LEU 734 A LEU 734 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc9 A O LYS 735 A LYS 735 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? 
metalc ? metalc10 A O LYS 736 A LYS 736 1_555 E K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? 
metalc ? metalc11 A O ALA 737 A ALA 737 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc12 A O ALA 737 A ALA 737 1_555 E K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.401 ? 
metalc ? metalc13 A OD2 ASP 756 A ASP 756 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? 
metalc ? metalc14 A OE2 GLU 795 A GLU 795 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc15 A OE1 GLU 820 A GLU 820 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.363 ? 
metalc ? metalc16 A OE2 GLU 820 A GLU 820 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.472 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 318 n n 
C1 O1 NAG sing 319 n n 
C1 O5 NAG sing 320 n n 
C1 H1 NAG sing 321 n n 
C2 C3 NAG sing 322 n n 
C2 N2 NAG sing 323 n n 
C2 H2 NAG sing 324 n n 
C3 C4 NAG sing 325 n n 
C3 O3 NAG sing 326 n n 
C3 H3 NAG sing 327 n n 
C4 C5 NAG sing 328 n n 
C4 O4 NAG sing 329 n n 
C4 H4 NAG sing 330 n n 
C5 C6 NAG sing 331 n n 
C5 O5 NAG sing 332 n n 
C5 H5 NAG sing 333 n n 
C6 O6 NAG sing 334 n n 
C6 H61 NAG sing 335 n n 
C6 H62 NAG sing 336 n n 
C7 C8 NAG sing 337 n n 
C7 N2 NAG sing 338 n n 
C7 O7 NAG doub 339 n n 
C8 H81 NAG sing 340 n n 
C8 H82 NAG sing 341 n n 
C8 H83 NAG sing 342 n n 
N2 HN2 NAG sing 343 n n 
O1 HO1 NAG sing 344 n n 
O3 HO3 NAG sing 345 n n 
O4 HO4 NAG sing 346 n n 
O6 HO6 NAG sing 347 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8WA5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 K A 1 1101 1038 K K . 
D 3 K A 1 1102 1039 K K . 
E 3 K A 1 1103 1040 K K . 
F 4 ALF A 1 1104 1041 ALF ALF . 
G 5 MG A 1 1105 1042 MG MG . 
H 6 CLR A 1 1106 302 CLR CLR . 
I 7 PCW B 1 301 301 PCW PCW . 
J 8 NAG B 1 302 303 NAG NAG . 
K 8 NAG B 1 303 305 NAG NAG . 
L 8 NAG B 1 304 306 NAG NAG . 
M 8 NAG B 1 305 307 NAG NAG . 
N 8 NAG B 1 306 308 NAG NAG . 
O 9 HOH A 1 1201 3 HOH HOH . 
O 9 HOH A 2 1202 1 HOH HOH . 
O 9 HOH A 3 1203 4 HOH HOH . 
O 9 HOH A 4 1204 7 HOH HOH . 
O 9 HOH A 5 1205 2 HOH HOH . 
O 9 HOH A 6 1206 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . N 8 175.553 184.972 228.796 1 70.8 ? C1 NAG 306 B 1 
HETATM 2 C C2 NAG . . . N 8 176.873 185.585 229.26 1 70.8 ? C2 NAG 306 B 1 
HETATM 3 C C3 NAG . . . N 8 177.65 184.581 230.103 1 70.8 ? C3 NAG 306 B 1 
HETATM 4 C C4 NAG . . . N 8 176.774 184.008 231.211 1 70.8 ? C4 NAG 306 B 1 
HETATM 5 C C5 NAG . . . N 8 175.459 183.492 230.638 1 70.8 ? C5 NAG 306 B 1 
HETATM 6 C C6 NAG . . . N 8 174.544 182.955 231.731 1 70.8 ? C6 NAG 306 B 1 
HETATM 7 C C7 NAG . . . N 8 177.564 187.206 227.585 1 70.8 ? C7 NAG 306 B 1 
HETATM 8 C C8 NAG . . . N 8 178.506 187.507 226.457 1 70.8 ? C8 NAG 306 B 1 
HETATM 9 N N2 NAG . . . N 8 177.672 185.993 228.121 1 70.8 ? N2 NAG 306 B 1 
HETATM 10 O O3 NAG . . . N 8 178.793 185.221 230.68 1 70.8 ? O3 NAG 306 B 1 
HETATM 11 O O4 NAG . . . N 8 177.464 182.933 231.859 1 70.8 ? O4 NAG 306 B 1 
HETATM 12 O O5 NAG . . . N 8 174.797 184.542 229.932 1 70.8 ? O5 NAG 306 B 1 
HETATM 13 O O6 NAG . . . N 8 175.218 181.911 232.443 1 70.8 ? O6 NAG 306 B 1 
HETATM 14 O O7 NAG . . . N 8 176.749 188.021 227.985 1 70.8 ? O7 NAG 306 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#