data_8WB1
#
_model_server_result.job_id            5lY7UeS0GELxxU11D7OLrw 
_model_server_result.datetime_utc      '2024-11-14 10:48:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wb1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    8WB1 
#
_exptl.entry_id    8WB1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WB1 
_cell.length_a            40.099 
_cell.length_b            51.955 
_cell.length_c            90.475 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WB1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OD2 ASP 13 A ASP 12 1_555 E C15 W3T . A W3T 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
metalc ? metalc1 A OG SER 18 A SER 18 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc2 B O3B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc3 C MG MG . A MG 202 1_555 F O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc4 C MG MG . A MG 202 1_555 F O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 F O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 F O HOH . A HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8WB1 
_atom_sites.fract_transf_matrix[1][1]    0.024938 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019247 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011053 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 201 201 GDP GDP . 
C 3 MG A 1 202 203 MG MG . 
D 4 EDO A 1 203 204 EDO EDO . 
E 5 W3T A 1 204 12 W3T N2D . 
F 6 HOH A 1 301 374 HOH HOH . 
F 6 HOH A 2 302 345 HOH HOH . 
F 6 HOH A 3 303 365 HOH HOH . 
F 6 HOH A 4 304 332 HOH HOH . 
F 6 HOH A 5 305 334 HOH HOH . 
F 6 HOH A 6 306 319 HOH HOH . 
F 6 HOH A 7 307 333 HOH HOH . 
F 6 HOH A 8 308 318 HOH HOH . 
F 6 HOH A 9 309 331 HOH HOH . 
F 6 HOH A 10 310 312 HOH HOH . 
F 6 HOH A 11 311 303 HOH HOH . 
F 6 HOH A 12 312 308 HOH HOH . 
F 6 HOH A 13 313 391 HOH HOH . 
F 6 HOH A 14 314 338 HOH HOH . 
F 6 HOH A 15 315 398 HOH HOH . 
F 6 HOH A 16 316 335 HOH HOH . 
F 6 HOH A 17 317 324 HOH HOH . 
F 6 HOH A 18 318 400 HOH HOH . 
F 6 HOH A 19 319 356 HOH HOH . 
F 6 HOH A 20 320 397 HOH HOH . 
F 6 HOH A 21 321 327 HOH HOH . 
F 6 HOH A 22 322 313 HOH HOH . 
F 6 HOH A 23 323 325 HOH HOH . 
F 6 HOH A 24 324 349 HOH HOH . 
F 6 HOH A 25 325 358 HOH HOH . 
F 6 HOH A 26 326 311 HOH HOH . 
F 6 HOH A 27 327 317 HOH HOH . 
F 6 HOH A 28 328 354 HOH HOH . 
F 6 HOH A 29 329 371 HOH HOH . 
F 6 HOH A 30 330 314 HOH HOH . 
F 6 HOH A 31 331 336 HOH HOH . 
F 6 HOH A 32 332 301 HOH HOH . 
F 6 HOH A 33 333 306 HOH HOH . 
F 6 HOH A 34 334 320 HOH HOH . 
F 6 HOH A 35 335 384 HOH HOH . 
F 6 HOH A 36 336 340 HOH HOH . 
F 6 HOH A 37 337 387 HOH HOH . 
F 6 HOH A 38 338 377 HOH HOH . 
F 6 HOH A 39 339 321 HOH HOH . 
F 6 HOH A 40 340 373 HOH HOH . 
F 6 HOH A 41 341 322 HOH HOH . 
F 6 HOH A 42 342 302 HOH HOH . 
F 6 HOH A 43 343 315 HOH HOH . 
F 6 HOH A 44 344 346 HOH HOH . 
F 6 HOH A 45 345 341 HOH HOH . 
F 6 HOH A 46 346 360 HOH HOH . 
F 6 HOH A 47 347 364 HOH HOH . 
F 6 HOH A 48 348 326 HOH HOH . 
F 6 HOH A 49 349 369 HOH HOH . 
F 6 HOH A 50 350 367 HOH HOH . 
F 6 HOH A 51 351 350 HOH HOH . 
F 6 HOH A 52 352 343 HOH HOH . 
F 6 HOH A 53 353 372 HOH HOH . 
F 6 HOH A 54 354 352 HOH HOH . 
F 6 HOH A 55 355 403 HOH HOH . 
F 6 HOH A 56 356 323 HOH HOH . 
F 6 HOH A 57 357 381 HOH HOH . 
F 6 HOH A 58 358 348 HOH HOH . 
F 6 HOH A 59 359 339 HOH HOH . 
F 6 HOH A 60 360 330 HOH HOH . 
F 6 HOH A 61 361 402 HOH HOH . 
F 6 HOH A 62 362 351 HOH HOH . 
F 6 HOH A 63 363 368 HOH HOH . 
F 6 HOH A 64 364 359 HOH HOH . 
F 6 HOH A 65 365 363 HOH HOH . 
F 6 HOH A 66 366 329 HOH HOH . 
F 6 HOH A 67 367 378 HOH HOH . 
F 6 HOH A 68 368 304 HOH HOH . 
F 6 HOH A 69 369 316 HOH HOH . 
F 6 HOH A 70 370 305 HOH HOH . 
F 6 HOH A 71 371 361 HOH HOH . 
F 6 HOH A 72 372 347 HOH HOH . 
F 6 HOH A 73 373 395 HOH HOH . 
F 6 HOH A 74 374 370 HOH HOH . 
F 6 HOH A 75 375 353 HOH HOH . 
F 6 HOH A 76 376 390 HOH HOH . 
F 6 HOH A 77 377 307 HOH HOH . 
F 6 HOH A 78 378 310 HOH HOH . 
F 6 HOH A 79 379 394 HOH HOH . 
F 6 HOH A 80 380 376 HOH HOH . 
F 6 HOH A 81 381 383 HOH HOH . 
F 6 HOH A 82 382 342 HOH HOH . 
F 6 HOH A 83 383 386 HOH HOH . 
F 6 HOH A 84 384 382 HOH HOH . 
F 6 HOH A 85 385 396 HOH HOH . 
F 6 HOH A 86 386 385 HOH HOH . 
F 6 HOH A 87 387 401 HOH HOH . 
F 6 HOH A 88 388 366 HOH HOH . 
F 6 HOH A 89 389 337 HOH HOH . 
F 6 HOH A 90 390 375 HOH HOH . 
F 6 HOH A 91 391 344 HOH HOH . 
F 6 HOH A 92 392 388 HOH HOH . 
F 6 HOH A 93 393 379 HOH HOH . 
F 6 HOH A 94 394 393 HOH HOH . 
F 6 HOH A 95 395 355 HOH HOH . 
F 6 HOH A 96 396 399 HOH HOH . 
F 6 HOH A 97 397 357 HOH HOH . 
F 6 HOH A 98 398 392 HOH HOH . 
F 6 HOH A 99 399 380 HOH HOH . 
F 6 HOH A 100 400 389 HOH HOH . 
F 6 HOH A 101 401 362 HOH HOH . 
F 6 HOH A 102 402 328 HOH HOH . 
F 6 HOH A 103 403 309 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 13.904 -6.647 -16.529 1 33.54 ? C1 EDO 203 A 1 
HETATM 2 O O1 EDO . . . D 4 13.054 -7.687 -16.029 1 32.25 ? O1 EDO 203 A 1 
HETATM 3 C C2 EDO . . . D 4 14.039 -6.783 -18.04 1 35.41 ? C2 EDO 203 A 1 
HETATM 4 O O2 EDO . . . D 4 12.816 -6.383 -18.666 1 33.98 ? O2 EDO 203 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#