data_8WBZ # _model_server_result.job_id 51iXzrQFEYbY5fPyVNoWrg _model_server_result.datetime_utc '2024-11-21 14:05:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":703}' # _entry.id 8WBZ # _exptl.entry_id 8WBZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 286.165 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-bromanyl-3-methyl-phenoxy)-~{N}-propyl-ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WBZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 W N N ? 5 BA N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG E 1 NAG 3 n E NAG 2 E 2 NAG E 2 NAG 3 n F NAG 1 K 1 NAG K 1 NAG 3 n F NAG 2 K 2 NAG K 2 NAG 3 n G NAG 1 L 1 NAG L 1 NAG 3 n G NAG 2 L 2 NAG L 2 NAG 3 n H NAG 1 S 1 NAG S 1 NAG 3 n H NAG 2 S 2 NAG S 2 NAG 3 n I NAG 1 T 1 NAG T 3 NAG 3 n I NAG 2 T 2 NAG T 4 NAG 3 n J NAG 1 F 1 NAG T 9 NAG 3 n J NAG 2 F 2 NAG T 10 NAG 3 n K NAG 1 G 1 NAG T 13 NAG 3 n K NAG 2 G 2 NAG T 14 NAG 3 n L NAG 1 H 1 NAG T 15 NAG 3 n L NAG 2 H 2 NAG T 16 NAG 3 n M NAG 1 I 1 NAG T 25 NAG 3 n M NAG 2 I 2 NAG T 26 NAG 3 n N NAG 1 J 1 NAG T 27 NAG 3 n N NAG 2 J 2 NAG T 28 NAG 3 n O NAG 1 M 1 NAG T 33 NAG 3 n O NAG 2 M 2 NAG T 34 NAG 3 n P NAG 1 N 1 NAG T 35 NAG 3 n P NAG 2 N 2 NAG T 36 NAG 3 n Q NAG 1 O 1 NAG T 37 NAG 3 n Q NAG 2 O 2 NAG T 38 NAG 3 n R NAG 1 P 1 NAG T 39 NAG 3 n R NAG 2 P 2 NAG T 40 NAG 3 n S NAG 1 Q 1 NAG T 41 NAG 3 n S NAG 2 Q 2 NAG T 42 NAG 3 n T NAG 1 R 1 NAG T 43 NAG 3 n T NAG 2 R 2 NAG T 44 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 170 A CYS 153 1_555 A SG CYS 183 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 353 A CYS 336 1_555 A SG CYS 400 A CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 133 B CYS 133 1_555 B SG CYS 141 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 344 B CYS 344 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 530 B CYS 530 1_555 B SG CYS 542 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 C SG CYS 133 C CYS 133 1_555 C SG CYS 141 C CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 C SG CYS 344 C CYS 344 1_555 C SG CYS 361 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 C SG CYS 530 C CYS 530 1_555 C SG CYS 542 C CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 D SG CYS 170 D CYS 153 1_555 D SG CYS 183 D CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 D SG CYS 353 D CYS 336 1_555 D SG CYS 400 D CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 199 A ASN 182 1_555 V C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 275 A ASN 258 1_555 K C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.536 ? covale ? covale3 A ND2 ASN 371 A ASN 354 1_555 U C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 385 A ASN 368 1_555 S C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? covale ? covale5 B ND2 ASN 53 B ASN 53 1_555 I C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 90 B ASN 90 1_555 R C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? covale ? covale7 B ND2 ASN 103 B ASN 103 1_555 J C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 B ND2 ASN 322 B ASN 322 1_555 X C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 B ND2 ASN 432 B ASN 432 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale10 B ND2 ASN 546 B ASN 546 1_555 O C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? covale ? covale11 C ND2 ASN 53 C ASN 53 1_555 F C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 C ND2 ASN 103 C ASN 103 1_555 M C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.543 ? covale ? covale13 C ND2 ASN 322 C ASN 322 1_555 Y C1 NAG . C NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 C ND2 ASN 432 C ASN 432 1_555 H C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 C ND2 ASN 546 C ASN 546 1_555 G C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.537 ? covale ? covale16 C ND2 ASN 690 C ASN 690 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale17 D ND2 ASN 199 D ASN 182 1_555 Z C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale18 D ND2 ASN 275 D ASN 258 1_555 P C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale19 D ND2 ASN 371 D ASN 354 1_555 AA C1 NAG . D NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale20 D ND2 ASN 385 D ASN 368 1_555 T C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale21 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale22 F O4 NAG . K NAG 1 1_555 F C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale23 G O4 NAG . L NAG 1 1_555 G C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale24 H O4 NAG . S NAG 1 1_555 H C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale25 I O4 NAG . T NAG 1 1_555 I C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale26 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale27 K O4 NAG . G NAG 1 1_555 K C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale28 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale29 M O4 NAG . I NAG 1 1_555 M C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale30 N O4 NAG . J NAG 1 1_555 N C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale31 O O4 NAG . M NAG 1 1_555 O C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale32 P O4 NAG . N NAG 1 1_555 P C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale33 Q O4 NAG . O NAG 1 1_555 Q C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale34 R O4 NAG . P NAG 1 1_555 R C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale35 S O4 NAG . Q NAG 1 1_555 S C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.245 ? covale ? covale36 T O4 NAG . R NAG 1 1_555 T C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.222 ? # _chem_comp.formula 'C12 H16 Br N O2' _chem_comp.formula_weight 286.165 _chem_comp.id XF0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-bromanyl-3-methyl-phenoxy)-~{N}-propyl-ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N08 C09 XF0 sing 404 n n N08 C07 XF0 sing 405 n n C06 O05 XF0 sing 406 n n C06 C07 XF0 sing 407 n n O05 C04 XF0 sing 408 n n C09 C10 XF0 sing 409 n n C03 C04 XF0 doub 410 n y C03 C02 XF0 sing 411 n y C07 O12 XF0 doub 412 n n C01 C02 XF0 sing 413 n n C10 C11 XF0 sing 414 n n C04 C13 XF0 sing 415 n y C02 C15 XF0 doub 416 n y C13 C14 XF0 doub 417 n y C15 C14 XF0 sing 418 n y C15 BR1 XF0 sing 419 n n C10 H1 XF0 sing 420 n n C10 H2 XF0 sing 421 n n C13 H3 XF0 sing 422 n n C01 H4 XF0 sing 423 n n C01 H5 XF0 sing 424 n n C01 H6 XF0 sing 425 n n C03 H7 XF0 sing 426 n n C06 H8 XF0 sing 427 n n C06 H9 XF0 sing 428 n n N08 H10 XF0 sing 429 n n C09 H11 XF0 sing 430 n n C09 H12 XF0 sing 431 n n C11 H13 XF0 sing 432 n n C11 H14 XF0 sing 433 n n C11 H15 XF0 sing 434 n n C14 H16 XF0 sing 435 n n # _atom_sites.entry_id 8WBZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 4 NAG A 1 701 702 NAG NAG . V 4 NAG A 1 702 3 NAG NAG . W 5 XF0 A 1 703 704 XF0 LIG . X 4 NAG B 1 901 801 NAG NAG . Y 4 NAG C 1 901 801 NAG NAG . Z 4 NAG D 1 701 5 NAG NAG . AA 4 NAG D 1 702 6 NAG NAG . BA 5 XF0 D 1 703 703 XF0 LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 XF0 . . . BA 5 132.001 144.923 164.129 1 206.19 ? C10 XF0 703 D 1 HETATM 2 C C13 XF0 . . . BA 5 132.338 151.352 165.593 1 207.87 ? C13 XF0 703 D 1 HETATM 3 C C15 XF0 . . . BA 5 133.763 153.283 165.769 1 213.57 ? C15 XF0 703 D 1 HETATM 4 C C01 XF0 . . . BA 5 134.383 154.753 163.752 1 212.04 ? C01 XF0 703 D 1 HETATM 5 C C02 XF0 . . . BA 5 133.636 153.514 164.413 1 208.99 ? C02 XF0 703 D 1 HETATM 6 C C03 XF0 . . . BA 5 132.849 152.659 163.624 1 205.81 ? C03 XF0 703 D 1 HETATM 7 C C04 XF0 . . . BA 5 132.207 151.592 164.205 1 206.18 ? C04 XF0 703 D 1 HETATM 8 O O05 XF0 . . . BA 5 131.418 150.737 163.419 1 209.13 ? O05 XF0 703 D 1 HETATM 9 C C06 XF0 . . . BA 5 132.075 149.608 163.025 1 207.55 ? C06 XF0 703 D 1 HETATM 10 C C07 XF0 . . . BA 5 131.434 148.398 163.693 1 206.41 ? C07 XF0 703 D 1 HETATM 11 N N08 XF0 . . . BA 5 131.448 147.088 163.005 1 205.4 ? N08 XF0 703 D 1 HETATM 12 C C09 XF0 . . . BA 5 130.847 145.938 163.636 1 205.37 ? C09 XF0 703 D 1 HETATM 13 C C11 XF0 . . . BA 5 133.337 145.656 164.404 1 206.91 ? C11 XF0 703 D 1 HETATM 14 O O12 XF0 . . . BA 5 130.935 148.499 164.754 1 207.73 ? O12 XF0 703 D 1 HETATM 15 C C14 XF0 . . . BA 5 133.107 152.19 166.366 1 210.71 ? C14 XF0 703 D 1 HETATM 16 BR BR1 XF0 . . . BA 5 134.865 154.487 166.861 1 266.35 ? BR1 XF0 703 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #