data_8WCG
#
_model_server_result.job_id            Vns98dgwXVbw6cA5P9FS2g 
_model_server_result.datetime_utc      '2024-10-11 09:28:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wcg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":601}' 
#
_entry.id    8WCG 
#
_exptl.entry_id    8WCG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WCG 
_cell.length_a            76.852 
_cell.length_b            134.679 
_cell.length_c            136.688 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WCG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 323 1_555 A SG CYS 29 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 47 A CYS 366 1_555 A SG CYS 100 A CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 59 A CYS 378 1_555 A SG CYS 192 A CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 148 A CYS 467 1_555 A SG CYS 155 A CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 B SG CYS 22 C CYS 22 1_555 B SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 4 B CYS 323 1_555 C SG CYS 29 B CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 C SG CYS 47 B CYS 366 1_555 C SG CYS 100 B CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf8 C SG CYS 59 B CYS 378 1_555 C SG CYS 192 B CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 C SG CYS 148 B CYS 467 1_555 C SG CYS 155 B CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf10 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 E SG CYS 22 b CYS 22 1_555 E SG CYS 96 b CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf12 E SG CYS 50 b CYS 50 1_555 E SG CYS 111 b CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf13 F SG CYS 22 E CYS 22 1_555 F SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 F SG CYS 50 E CYS 50 1_555 F SG CYS 111 E CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
covale ? covale1 C ND2 ASN 11 B ASN 330 1_555 H C1 NAG . B NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8WCG 
_atom_sites.fract_transf_matrix[1][1]    0.013012 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007316 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG A 1 601 601 NAG NAG . 
H 4 NAG B 1 600 600 NAG NAG . 
I 5 HOH A 1 701 39 HOH HOH . 
I 5 HOH A 2 702 60 HOH HOH . 
I 5 HOH A 3 703 6 HOH HOH . 
I 5 HOH A 4 704 32 HOH HOH . 
I 5 HOH A 5 705 56 HOH HOH . 
I 5 HOH A 6 706 73 HOH HOH . 
I 5 HOH A 7 707 37 HOH HOH . 
I 5 HOH A 8 708 9 HOH HOH . 
I 5 HOH A 9 709 20 HOH HOH . 
I 5 HOH A 10 710 43 HOH HOH . 
I 5 HOH A 11 711 49 HOH HOH . 
I 5 HOH A 12 712 65 HOH HOH . 
I 5 HOH A 13 713 85 HOH HOH . 
I 5 HOH A 14 714 80 HOH HOH . 
I 5 HOH A 15 715 61 HOH HOH . 
I 5 HOH A 16 716 1 HOH HOH . 
I 5 HOH A 17 717 54 HOH HOH . 
I 5 HOH A 18 718 16 HOH HOH . 
I 5 HOH A 19 719 90 HOH HOH . 
J 5 HOH C 1 201 63 HOH HOH . 
J 5 HOH C 2 202 47 HOH HOH . 
J 5 HOH C 3 203 99 HOH HOH . 
J 5 HOH C 4 204 89 HOH HOH . 
J 5 HOH C 5 205 62 HOH HOH . 
J 5 HOH C 6 206 48 HOH HOH . 
J 5 HOH C 7 207 69 HOH HOH . 
J 5 HOH C 8 208 70 HOH HOH . 
J 5 HOH C 9 209 92 HOH HOH . 
K 5 HOH B 1 701 75 HOH HOH . 
K 5 HOH B 2 702 25 HOH HOH . 
K 5 HOH B 3 703 77 HOH HOH . 
K 5 HOH B 4 704 76 HOH HOH . 
K 5 HOH B 5 705 3 HOH HOH . 
K 5 HOH B 6 706 44 HOH HOH . 
K 5 HOH B 7 707 22 HOH HOH . 
K 5 HOH B 8 708 42 HOH HOH . 
K 5 HOH B 9 709 34 HOH HOH . 
K 5 HOH B 10 710 68 HOH HOH . 
K 5 HOH B 11 711 41 HOH HOH . 
K 5 HOH B 12 712 40 HOH HOH . 
K 5 HOH B 13 713 50 HOH HOH . 
K 5 HOH B 14 714 35 HOH HOH . 
K 5 HOH B 15 715 87 HOH HOH . 
K 5 HOH B 16 716 91 HOH HOH . 
K 5 HOH B 17 717 15 HOH HOH . 
K 5 HOH B 18 718 55 HOH HOH . 
K 5 HOH B 19 719 84 HOH HOH . 
K 5 HOH B 20 720 94 HOH HOH . 
K 5 HOH B 21 721 8 HOH HOH . 
K 5 HOH B 22 722 12 HOH HOH . 
K 5 HOH B 23 723 31 HOH HOH . 
K 5 HOH B 24 724 21 HOH HOH . 
K 5 HOH B 25 725 82 HOH HOH . 
K 5 HOH B 26 726 28 HOH HOH . 
K 5 HOH B 27 727 52 HOH HOH . 
K 5 HOH B 28 728 29 HOH HOH . 
K 5 HOH B 29 729 64 HOH HOH . 
K 5 HOH B 30 730 96 HOH HOH . 
L 5 HOH D 1 201 67 HOH HOH . 
L 5 HOH D 2 202 27 HOH HOH . 
L 5 HOH D 3 203 18 HOH HOH . 
L 5 HOH D 4 204 4 HOH HOH . 
L 5 HOH D 5 205 53 HOH HOH . 
L 5 HOH D 6 206 2 HOH HOH . 
L 5 HOH D 7 207 97 HOH HOH . 
L 5 HOH D 8 208 98 HOH HOH . 
M 5 HOH b 1 201 51 HOH HOH . 
M 5 HOH b 2 202 24 HOH HOH . 
M 5 HOH b 3 203 13 HOH HOH . 
M 5 HOH b 4 204 11 HOH HOH . 
M 5 HOH b 5 205 93 HOH HOH . 
M 5 HOH b 6 206 74 HOH HOH . 
M 5 HOH b 7 207 19 HOH HOH . 
M 5 HOH b 8 208 83 HOH HOH . 
M 5 HOH b 9 209 59 HOH HOH . 
M 5 HOH b 10 210 66 HOH HOH . 
M 5 HOH b 11 211 38 HOH HOH . 
M 5 HOH b 12 212 86 HOH HOH . 
M 5 HOH b 13 213 46 HOH HOH . 
M 5 HOH b 14 214 33 HOH HOH . 
M 5 HOH b 15 215 88 HOH HOH . 
M 5 HOH b 16 216 23 HOH HOH . 
M 5 HOH b 17 217 79 HOH HOH . 
N 5 HOH E 1 201 5 HOH HOH . 
N 5 HOH E 2 202 58 HOH HOH . 
N 5 HOH E 3 203 14 HOH HOH . 
N 5 HOH E 4 204 26 HOH HOH . 
N 5 HOH E 5 205 102 HOH HOH . 
N 5 HOH E 6 206 100 HOH HOH . 
N 5 HOH E 7 207 36 HOH HOH . 
N 5 HOH E 8 208 95 HOH HOH . 
N 5 HOH E 9 209 101 HOH HOH . 
N 5 HOH E 10 210 45 HOH HOH . 
N 5 HOH E 11 211 71 HOH HOH . 
N 5 HOH E 12 212 10 HOH HOH . 
N 5 HOH E 13 213 30 HOH HOH . 
N 5 HOH E 14 214 17 HOH HOH . 
N 5 HOH E 15 215 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 4 -9.093 -13.834 4.821 1 85.57 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . G 4 -10.263 -13.812 3.873 1 88.32 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . G 4 -10.077 -14.878 2.801 1 90.65 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . G 4 -8.602 -15.215 2.581 1 90.78 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . G 4 -7.623 -14.077 2.931 1 93.01 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . G 4 -7.515 -13.022 1.851 1 88.94 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . G 4 -12.64 -13.351 4.288 1 77.56 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . G 4 -13.833 -13.667 5.139 1 70.24 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . G 4 -11.514 -14.008 4.588 1 81.88 ? N2 NAG 601 A 1 
HETATM 10 O O1 NAG . . . G 4 -9.368 -13 5.896 1 85.35 ? O1 NAG 601 A 1 
HETATM 11 O O3 NAG . . . G 4 -10.659 -14.431 1.581 1 94.01 ? O3 NAG 601 A 1 
HETATM 12 O O4 NAG . . . G 4 -8.246 -16.39 3.302 1 92.15 ? O4 NAG 601 A 1 
HETATM 13 O O5 NAG . . . G 4 -7.948 -13.391 4.154 1 88.01 ? O5 NAG 601 A 1 
HETATM 14 O O6 NAG . . . G 4 -6.77 -11.899 2.301 1 81.89 ? O6 NAG 601 A 1 
HETATM 15 O O7 NAG . . . G 4 -12.693 -12.54 3.368 1 79.69 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#