data_8WCK # _model_server_result.job_id mw1WusOuVGyakuEtuGJB6A _model_server_result.datetime_utc '2025-09-03 22:09:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wck # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CB","auth_seq_id":314}' # _entry.id 8WCK # _exptl.entry_id 8WCK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 610.941 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Chlorophyll c1' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WCK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WCK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 Q N N ? 5 IA N N ? 5 KA N N ? 5 AB N N ? 5 CB N N ? 5 RB N N ? 5 TB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 64 1 GLU 64 1_555 K MG CLA . 1 CLA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc2 A OE1 GLU 128 1 GLU 128 1_555 O MG KC1 . 1 KC1 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc3 A OE2 GLU 163 1 GLU 163 1_555 P MG CLA . 1 CLA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc4 B OE2 GLU 64 2 GLU 64 1_555 EA MG CLA . 2 CLA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc5 B OE1 GLU 128 2 GLU 128 1_555 IA MG KC1 . 2 KC1 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc6 B OE2 GLU 163 2 GLU 163 1_555 JA MG CLA . 2 CLA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc7 B OD1 ASN 166 2 ASN 166 1_555 KA MG KC1 . 2 KC1 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc8 C OE2 GLU 64 3 GLU 64 1_555 WA MG CLA . 3 CLA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc9 C OE1 GLU 128 3 GLU 128 1_555 AB MG KC1 . 3 KC1 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc10 C OE2 GLU 163 3 GLU 163 1_555 BB MG CLA . 3 CLA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc11 D OE2 GLU 64 4 GLU 64 1_555 NB MG CLA . 4 CLA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc12 D OE1 GLU 128 4 GLU 128 1_555 RB MG KC1 . 4 KC1 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc13 D OE2 GLU 163 4 GLU 163 1_555 SB MG CLA . 4 CLA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? # _chem_comp.formula 'C35 H30 Mg N4 O5' _chem_comp.formula_weight 610.941 _chem_comp.id KC1 _chem_comp.mon_nstd_flag . _chem_comp.name 'Chlorophyll c1' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NB C1B KC1 sing 411 n n NB C4B KC1 sing 412 n n NB MG KC1 sing 413 n n ND C1D KC1 sing 414 n y ND C4D KC1 sing 415 n y ND MG KC1 sing 416 n n C1A C2A KC1 sing 417 n n C1A CHA KC1 doub 418 z n C1A NA KC1 sing 419 n n C1B C2B KC1 sing 420 n n C1B CHB KC1 doub 421 z n C1C C2C KC1 sing 422 n n C1C CHC KC1 sing 423 n n C1C NC KC1 doub 424 n n C1D C2D KC1 doub 425 n y C1D CHD KC1 sing 426 n n C2A C3A KC1 doub 427 n n C2A CAA KC1 sing 428 n n C2B C3B KC1 doub 429 n n C2B CMB KC1 sing 430 n n C2C C3C KC1 doub 431 n n C2C CMC KC1 sing 432 n n C2D C3D KC1 sing 433 n y C2D CMD KC1 sing 434 n n C3A C4A KC1 sing 435 n n C3A CMA KC1 sing 436 n n C3B C4B KC1 sing 437 n n C3B CAB KC1 sing 438 n n C3C C4C KC1 sing 439 n n C3C CAC KC1 sing 440 n n C3D C4D KC1 doub 441 n y C3D CAD KC1 sing 442 n n C4A CHB KC1 sing 443 n n C4A NA KC1 doub 444 n n C4B CHC KC1 doub 445 z n C4C CHD KC1 doub 446 z n C4C NC KC1 sing 447 n n C4D CHA KC1 sing 448 n n CAA CBA KC1 doub 449 e n CAB CBB KC1 doub 450 n n CAC CBC KC1 sing 451 n n CAD CBD KC1 sing 452 n n CAD OBD KC1 doub 453 n n CBA CGA KC1 sing 454 n n CBD CGD KC1 sing 455 n n CBD CHA KC1 sing 456 n n CED O2D KC1 sing 457 n n CGA O1A KC1 doub 458 n n CGA O2A KC1 sing 459 n n CGD O1D KC1 doub 460 n n CGD O2D KC1 sing 461 n n CAA H1 KC1 sing 462 n n CAB H2 KC1 sing 463 n n CAC H3 KC1 sing 464 n n CAC H4 KC1 sing 465 n n CBA H5 KC1 sing 466 n n CBB H6 KC1 sing 467 n n CBB H7 KC1 sing 468 n n CBC H8 KC1 sing 469 n n CBC H9 KC1 sing 470 n n CBC H10 KC1 sing 471 n n CBD H11 KC1 sing 472 n n CED H12 KC1 sing 473 n n CED H13 KC1 sing 474 n n CED H14 KC1 sing 475 n n CHB H15 KC1 sing 476 n n CHC H16 KC1 sing 477 n n CHD H17 KC1 sing 478 n n CMA H18 KC1 sing 479 n n CMA H19 KC1 sing 480 n n CMA H20 KC1 sing 481 n n CMB H21 KC1 sing 482 n n CMB H22 KC1 sing 483 n n CMB H23 KC1 sing 484 n n CMC H24 KC1 sing 485 n n CMC H25 KC1 sing 486 n n CMC H26 KC1 sing 487 n n CMD H27 KC1 sing 488 n n CMD H28 KC1 sing 489 n n CMD H29 KC1 sing 490 n n O2A H30 KC1 sing 491 n n NA MG KC1 sing 492 n n NC MG KC1 sing 493 n n # _atom_sites.entry_id 8WCK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 A86 1 1 301 301 A86 A86 . F 2 A86 1 1 302 302 A86 A86 . G 2 A86 1 1 303 303 A86 A86 . H 2 A86 1 1 304 305 A86 A86 . I 2 A86 1 1 305 306 A86 A86 . J 2 A86 1 1 306 307 A86 A86 . K 3 CLA 1 1 307 402 CLA CLA . L 4 KC2 1 1 308 403 KC2 KC2 . M 3 CLA 1 1 309 404 CLA CLA . N 4 KC2 1 1 310 405 KC2 KC2 . O 5 KC1 1 1 311 406 KC1 KC1 . P 3 CLA 1 1 312 407 CLA CLA . Q 5 KC1 1 1 313 408 KC1 KC1 . R 3 CLA 1 1 314 409 CLA CLA . S 3 CLA 1 1 315 410 CLA CLA . T 6 LMT 1 1 316 412 LMT LMT . U 6 LMT 1 1 317 413 LMT LMT . V 3 CLA 1 1 318 401 CLA CLA . W 3 CLA 2 1 401 401 CLA CLA . X 2 A86 2 1 402 301 A86 A86 . Y 2 A86 2 1 403 302 A86 A86 . Z 2 A86 2 1 404 303 A86 A86 . AA 2 A86 2 1 405 305 A86 A86 . BA 2 A86 2 1 406 306 A86 A86 . CA 2 A86 2 1 407 307 A86 A86 . DA 3 CLA 2 1 408 401 CLA CLA . EA 3 CLA 2 1 409 402 CLA CLA . FA 4 KC2 2 1 410 403 KC2 KC2 . GA 3 CLA 2 1 411 404 CLA CLA . HA 4 KC2 2 1 412 405 KC2 KC2 . IA 5 KC1 2 1 413 406 KC1 KC1 . JA 3 CLA 2 1 414 407 CLA CLA . KA 5 KC1 2 1 415 408 KC1 KC1 . LA 3 CLA 2 1 416 409 CLA CLA . MA 3 CLA 2 1 417 410 CLA CLA . NA 6 LMT 2 1 418 412 LMT LMT . OA 6 LMT 2 1 419 413 LMT LMT . PA 2 A86 3 1 301 301 A86 A86 . QA 2 A86 3 1 302 302 A86 A86 . RA 2 A86 3 1 303 303 A86 A86 . SA 2 A86 3 1 304 305 A86 A86 . TA 2 A86 3 1 305 306 A86 A86 . UA 2 A86 3 1 306 307 A86 A86 . VA 3 CLA 3 1 307 401 CLA CLA . WA 3 CLA 3 1 308 402 CLA CLA . XA 4 KC2 3 1 309 403 KC2 KC2 . YA 3 CLA 3 1 310 404 CLA CLA . ZA 4 KC2 3 1 311 405 KC2 KC2 . AB 5 KC1 3 1 312 406 KC1 KC1 . BB 3 CLA 3 1 313 407 CLA CLA . CB 5 KC1 3 1 314 408 KC1 KC1 . DB 3 CLA 3 1 315 409 CLA CLA . EB 3 CLA 3 1 316 410 CLA CLA . FB 6 LMT 3 1 317 412 LMT LMT . GB 6 LMT 3 1 318 413 LMT LMT . HB 2 A86 4 1 301 301 A86 A86 . IB 2 A86 4 1 302 302 A86 A86 . JB 2 A86 4 1 303 303 A86 A86 . KB 2 A86 4 1 304 305 A86 A86 . LB 2 A86 4 1 305 306 A86 A86 . MB 2 A86 4 1 306 307 A86 A86 . NB 3 CLA 4 1 307 402 CLA CLA . OB 4 KC2 4 1 308 403 KC2 KC2 . PB 3 CLA 4 1 309 404 CLA CLA . QB 4 KC2 4 1 310 405 KC2 KC2 . RB 5 KC1 4 1 311 406 KC1 KC1 . SB 3 CLA 4 1 312 407 CLA CLA . TB 5 KC1 4 1 313 408 KC1 KC1 . UB 3 CLA 4 1 314 409 CLA CLA . VB 3 CLA 4 1 315 410 CLA CLA . WB 6 LMT 4 1 316 412 LMT LMT . XB 6 LMT 4 1 317 413 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NB KC1 . . . CB 5 244.72 267.165 246.47 1 67.52 ? NB KC1 314 3 1 HETATM 2 N ND KC1 . . . CB 5 242.163 267.868 243.598 1 67.52 ? ND KC1 314 3 1 HETATM 3 C C1A KC1 . . . CB 5 243.963 265.631 242.59 1 67.52 ? C1A KC1 314 3 1 HETATM 4 C C1B KC1 . . . CB 5 245.691 266.239 246.448 1 67.52 ? C1B KC1 314 3 1 HETATM 5 C C1C KC1 . . . CB 5 242.929 269.318 247.415 1 67.52 ? C1C KC1 314 3 1 HETATM 6 C C1D KC1 . . . CB 5 241.154 268.758 243.599 1 67.52 ? C1D KC1 314 3 1 HETATM 7 C C2A KC1 . . . CB 5 244.854 264.554 242.169 1 67.52 ? C2A KC1 314 3 1 HETATM 8 C C2B KC1 . . . CB 5 246.386 266.244 247.685 1 67.52 ? C2B KC1 314 3 1 HETATM 9 C C2C KC1 . . . CB 5 242.039 270.368 247.873 1 67.52 ? C2C KC1 314 3 1 HETATM 10 C C2D KC1 . . . CB 5 240.47 268.622 242.375 1 67.52 ? C2D KC1 314 3 1 HETATM 11 C C3A KC1 . . . CB 5 245.737 264.369 243.221 1 67.52 ? C3A KC1 314 3 1 HETATM 12 C C3B KC1 . . . CB 5 245.8 267.21 248.463 1 67.52 ? C3B KC1 314 3 1 HETATM 13 C C3C KC1 . . . CB 5 241.168 270.608 246.872 1 67.52 ? C3C KC1 314 3 1 HETATM 14 C C3D KC1 . . . CB 5 241.099 267.623 241.645 1 67.52 ? C3D KC1 314 3 1 HETATM 15 C C4A KC1 . . . CB 5 245.399 265.278 244.231 1 67.52 ? C4A KC1 314 3 1 HETATM 16 C C4B KC1 . . . CB 5 244.744 267.767 247.662 1 67.52 ? C4B KC1 314 3 1 HETATM 17 C C4C KC1 . . . CB 5 241.501 269.718 245.781 1 67.52 ? C4C KC1 314 3 1 HETATM 18 C C4D KC1 . . . CB 5 242.153 267.173 242.446 1 67.52 ? C4D KC1 314 3 1 HETATM 19 C CAA KC1 . . . CB 5 244.799 263.862 240.88 1 67.52 ? CAA KC1 314 3 1 HETATM 20 C CAB KC1 . . . CB 5 246.141 267.605 249.84 1 67.52 ? CAB KC1 314 3 1 HETATM 21 C CAC KC1 . . . CB 5 240.054 271.616 246.879 1 67.52 ? CAC KC1 314 3 1 HETATM 22 C CAD KC1 . . . CB 5 241.114 266.852 240.394 1 67.52 ? CAD KC1 314 3 1 HETATM 23 C CBA KC1 . . . CB 5 244.877 262.524 240.731 1 67.52 ? CBA KC1 314 3 1 HETATM 24 C CBB KC1 . . . CB 5 247.298 268.172 250.148 1 67.52 ? CBB KC1 314 3 1 HETATM 25 C CBC KC1 . . . CB 5 240.578 272.929 246.3 1 67.52 ? CBC KC1 314 3 1 HETATM 26 C CBD KC1 . . . CB 5 242.186 265.803 240.617 1 67.52 ? CBD KC1 314 3 1 HETATM 27 C CED KC1 . . . CB 5 240.34 262.802 241.966 1 67.52 ? CED KC1 314 3 1 HETATM 28 C CGA KC1 . . . CB 5 245.04 262.007 239.425 1 67.52 ? CGA KC1 314 3 1 HETATM 29 C CGD KC1 . . . CB 5 241.536 264.455 240.75 1 67.52 ? CGD KC1 314 3 1 HETATM 30 C CHA KC1 . . . CB 5 242.892 266.186 241.878 1 67.52 ? CHA KC1 314 3 1 HETATM 31 C CHB KC1 . . . CB 5 246.069 265.367 245.449 1 67.52 ? CHB KC1 314 3 1 HETATM 32 C CHC KC1 . . . CB 5 243.967 268.777 248.169 1 67.52 ? CHC KC1 314 3 1 HETATM 33 C CHD KC1 . . . CB 5 240.801 269.673 244.566 1 67.52 ? CHD KC1 314 3 1 HETATM 34 C CMA KC1 . . . CB 5 246.868 263.377 243.305 1 67.52 ? CMA KC1 314 3 1 HETATM 35 C CMB KC1 . . . CB 5 247.541 265.358 248.061 1 67.52 ? CMB KC1 314 3 1 HETATM 36 C CMC KC1 . . . CB 5 242.085 271.052 249.212 1 67.52 ? CMC KC1 314 3 1 HETATM 37 C CMD KC1 . . . CB 5 239.27 269.419 241.944 1 67.52 ? CMD KC1 314 3 1 HETATM 38 N NA KC1 . . . CB 5 244.326 266.052 243.857 1 67.52 ? NA KC1 314 3 1 HETATM 39 N NC KC1 . . . CB 5 242.579 268.949 246.146 1 67.52 ? NC KC1 314 3 1 HETATM 40 O O1A KC1 . . . CB 5 245.668 260.982 239.256 1 67.52 ? O1A KC1 314 3 1 HETATM 41 O O1D KC1 . . . CB 5 241.28 263.812 239.762 1 67.52 ? O1D KC1 314 3 1 HETATM 42 O O2A KC1 . . . CB 5 244.313 262.521 238.415 1 67.52 ? O2A KC1 314 3 1 HETATM 43 O O2D KC1 . . . CB 5 241.098 264.039 241.943 1 67.52 ? O2D KC1 314 3 1 HETATM 44 O OBD KC1 . . . CB 5 240.253 266.831 239.545 1 67.52 ? OBD KC1 314 3 1 HETATM 45 MG MG KC1 . . . CB 5 243.476 267.525 245.002 1 67.52 ? MG KC1 314 3 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #