data_8WCL # _model_server_result.job_id 6PYnPStO_bwMUXNmP02wYg _model_server_result.datetime_utc '2025-02-18 20:56:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wcl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PB","auth_seq_id":316}' # _entry.id 8WCL # _exptl.entry_id 8WCL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WCL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 IA N N ? 9 PB N N ? 9 QB N N ? 9 JC N N ? 9 KC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 121 6 GLN 121 1_555 N MG KC2 . 6 KC2 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc2 A OE1 GLU 130 6 GLU 130 1_555 O MG KC1 . 6 KC1 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc3 A OE2 GLU 167 6 GLU 167 1_555 P MG CLA . 6 CLA 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc4 A OD1 ASN 170 6 ASN 170 1_555 Q MG KC1 . 6 KC1 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc5 B OE2 GLU 64 8 GLU 64 1_555 Z MG CLA . 8 CLA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc6 B OE2 GLU 128 8 GLU 128 1_555 DA MG KC1 . 8 KC1 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc7 B OE2 GLU 163 8 GLU 163 1_555 EA MG CLA . 8 CLA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? metalc ? metalc8 B OD1 ASN 166 8 ASN 166 1_555 FA MG KC1 . 8 KC1 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc9 C OE2 GLU 128 9 GLU 128 1_555 VA MG CLA . 9 CLA 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc10 C OE1 GLN 171 9 GLN 171 1_555 XA MG KC1 . 9 KC1 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc11 D OE1 GLU 128 5 GLU 128 1_555 KB MG KC1 . 5 KC1 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc12 D OD1 ASN 166 5 ASN 166 1_555 MB MG KC1 . 5 KC1 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc13 E OE2 GLU 64 7 GLU 64 1_555 AC MG CLA . 7 CLA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc14 E OE2 GLU 128 7 GLU 128 1_555 EC MG KC1 . 7 KC1 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc15 E OD1 ASN 166 7 ASN 166 1_555 GC MG KC1 . 7 KC1 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 750 n n C1B O1B LMT sing 751 n n C1B O5B LMT sing 752 n n C1B H1B LMT sing 753 n n C2B C3B LMT sing 754 n n C2B O2B LMT sing 755 n n C2B H2B LMT sing 756 n n C3B C4B LMT sing 757 n n C3B O3B LMT sing 758 n n C3B H3B LMT sing 759 n n C4B C5B LMT sing 760 n n C4B O4' LMT sing 761 n n C4B H4B LMT sing 762 n n C5B C6B LMT sing 763 n n C5B O5B LMT sing 764 n n C5B H5B LMT sing 765 n n C6B O6B LMT sing 766 n n C6B "H6'2" LMT sing 767 n n C6B "H6'1" LMT sing 768 n n O1B C4' LMT sing 769 n n O2B H2O1 LMT sing 770 n n O3B H3O1 LMT sing 771 n n O4' H4O1 LMT sing 772 n n O6B H6B LMT sing 773 n n C1' C2' LMT sing 774 n n C1' O1' LMT sing 775 n n C1' O5' LMT sing 776 n n C1' H1' LMT sing 777 n n C2' C3' LMT sing 778 n n C2' O2' LMT sing 779 n n C2' H2' LMT sing 780 n n C3' C4' LMT sing 781 n n C3' O3' LMT sing 782 n n C3' H3' LMT sing 783 n n C4' C5' LMT sing 784 n n C4' H4' LMT sing 785 n n C5' C6' LMT sing 786 n n C5' O5' LMT sing 787 n n C5' H5' LMT sing 788 n n C6' O6' LMT sing 789 n n C6' H6D LMT sing 790 n n C6' H6E LMT sing 791 n n O1' C1 LMT sing 792 n n O2' H2O2 LMT sing 793 n n O3' H3O2 LMT sing 794 n n O6' H6' LMT sing 795 n n C1 C2 LMT sing 796 n n C1 H12 LMT sing 797 n n C1 H11 LMT sing 798 n n C2 C3 LMT sing 799 n n C2 H22 LMT sing 800 n n C2 H21 LMT sing 801 n n C3 C4 LMT sing 802 n n C3 H32 LMT sing 803 n n C3 H31 LMT sing 804 n n C4 C5 LMT sing 805 n n C4 H42 LMT sing 806 n n C4 H41 LMT sing 807 n n C5 C6 LMT sing 808 n n C5 H52 LMT sing 809 n n C5 H51 LMT sing 810 n n C6 C7 LMT sing 811 n n C6 H62 LMT sing 812 n n C6 H61 LMT sing 813 n n C7 C8 LMT sing 814 n n C7 H72 LMT sing 815 n n C7 H71 LMT sing 816 n n C8 C9 LMT sing 817 n n C8 H82 LMT sing 818 n n C8 H81 LMT sing 819 n n C9 C10 LMT sing 820 n n C9 H92 LMT sing 821 n n C9 H91 LMT sing 822 n n C10 C11 LMT sing 823 n n C10 H102 LMT sing 824 n n C10 H101 LMT sing 825 n n C11 C12 LMT sing 826 n n C11 H112 LMT sing 827 n n C11 H111 LMT sing 828 n n C12 H123 LMT sing 829 n n C12 H122 LMT sing 830 n n C12 H121 LMT sing 831 n n # _atom_sites.entry_id 8WCL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 A86 6 1 301 301 A86 A86 . G 5 A86 6 1 302 302 A86 A86 . H 5 A86 6 1 303 303 A86 A86 . I 5 A86 6 1 304 305 A86 A86 . J 6 CLA 6 1 305 401 CLA CLA . K 6 CLA 6 1 306 402 CLA CLA . L 7 KC2 6 1 307 403 KC2 KC2 . M 6 CLA 6 1 308 404 CLA CLA . N 7 KC2 6 1 309 405 KC2 KC2 . O 8 KC1 6 1 310 406 KC1 KC1 . P 6 CLA 6 1 311 407 CLA CLA . Q 8 KC1 6 1 312 408 KC1 KC1 . R 6 CLA 6 1 313 409 CLA CLA . S 6 CLA 6 1 314 401 CLA CLA . T 5 A86 8 1 301 301 A86 A86 . U 5 A86 8 1 302 302 A86 A86 . V 5 A86 8 1 303 303 A86 A86 . W 5 A86 8 1 304 305 A86 A86 . X 5 A86 8 1 305 306 A86 A86 . Y 5 A86 8 1 306 307 A86 A86 . Z 6 CLA 8 1 307 402 CLA CLA . AA 7 KC2 8 1 308 403 KC2 KC2 . BA 6 CLA 8 1 309 404 CLA CLA . CA 7 KC2 8 1 310 405 KC2 KC2 . DA 8 KC1 8 1 311 406 KC1 KC1 . EA 6 CLA 8 1 312 407 CLA CLA . FA 8 KC1 8 1 313 408 KC1 KC1 . GA 6 CLA 8 1 314 409 CLA CLA . HA 6 CLA 8 1 315 410 CLA CLA . IA 9 LMT 8 1 316 411 LMT LMT . JA 5 A86 9 1 301 301 A86 A86 . KA 5 A86 9 1 302 302 A86 A86 . LA 5 A86 9 1 303 303 A86 A86 . MA 5 A86 9 1 304 304 A86 A86 . NA 5 A86 9 1 305 305 A86 A86 . OA 5 A86 9 1 306 306 A86 A86 . PA 5 A86 9 1 307 307 A86 A86 . QA 6 CLA 9 1 308 401 CLA CLA . RA 6 CLA 9 1 309 402 CLA CLA . SA 7 KC2 9 1 310 403 KC2 KC2 . TA 6 CLA 9 1 311 404 CLA CLA . UA 6 CLA 9 1 312 405 CLA CLA . VA 6 CLA 9 1 313 406 CLA CLA . WA 6 CLA 9 1 314 407 CLA CLA . XA 8 KC1 9 1 315 408 KC1 KC1 . YA 6 CLA 9 1 316 409 CLA CLA . ZA 10 LMG 9 1 317 411 LMG LMG . AB 5 A86 5 1 301 301 A86 A86 . BB 5 A86 5 1 302 302 A86 A86 . CB 5 A86 5 1 303 303 A86 A86 . DB 5 A86 5 1 304 305 A86 A86 . EB 5 A86 5 1 305 306 A86 A86 . FB 6 CLA 5 1 306 401 CLA CLA . GB 6 CLA 5 1 307 402 CLA CLA . HB 7 KC2 5 1 308 403 KC2 KC2 . IB 6 CLA 5 1 309 404 CLA CLA . JB 7 KC2 5 1 310 405 KC2 KC2 . KB 8 KC1 5 1 311 406 KC1 KC1 . LB 6 CLA 5 1 312 407 CLA CLA . MB 8 KC1 5 1 313 408 KC1 KC1 . NB 6 CLA 5 1 314 409 CLA CLA . OB 6 CLA 5 1 315 410 CLA CLA . PB 9 LMT 5 1 316 412 LMT LMT . QB 9 LMT 5 1 317 413 LMT LMT . RB 5 A86 5 1 318 414 A86 A86 . SB 5 A86 7 1 301 307 A86 A86 . TB 5 A86 7 1 302 301 A86 A86 . UB 5 A86 7 1 303 302 A86 A86 . VB 5 A86 7 1 304 303 A86 A86 . WB 5 A86 7 1 305 305 A86 A86 . XB 5 A86 7 1 306 306 A86 A86 . YB 5 A86 7 1 307 307 A86 A86 . ZB 6 CLA 7 1 308 401 CLA CLA . AC 6 CLA 7 1 309 402 CLA CLA . BC 7 KC2 7 1 310 403 KC2 KC2 . CC 6 CLA 7 1 311 404 CLA CLA . DC 7 KC2 7 1 312 405 KC2 KC2 . EC 8 KC1 7 1 313 406 KC1 KC1 . FC 6 CLA 7 1 314 407 CLA CLA . GC 8 KC1 7 1 315 408 KC1 KC1 . HC 6 CLA 7 1 316 409 CLA CLA . IC 10 LMG 7 1 317 411 LMG LMG . JC 9 LMT 7 1 318 412 LMT LMT . KC 9 LMT 7 1 319 413 LMT LMT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . PB 9 234.788 245.798 247.722 1 96.94 ? C1B LMT 316 5 1 HETATM 2 C C2B LMT . . . PB 9 233.954 244.583 248.163 1 96.94 ? C2B LMT 316 5 1 HETATM 3 C C3B LMT . . . PB 9 232.481 244.78 247.765 1 96.94 ? C3B LMT 316 5 1 HETATM 4 C C4B LMT . . . PB 9 232.004 246.195 248.163 1 96.94 ? C4B LMT 316 5 1 HETATM 5 C C5B LMT . . . PB 9 232.925 247.217 247.47 1 96.94 ? C5B LMT 316 5 1 HETATM 6 C C6B LMT . . . PB 9 233.351 248.29 248.465 1 96.94 ? C6B LMT 316 5 1 HETATM 7 O O1B LMT . . . PB 9 235.944 245.359 247.09 1 96.94 ? O1B LMT 316 5 1 HETATM 8 O O2B LMT . . . PB 9 234.482 243.484 247.538 1 96.94 ? O2B LMT 316 5 1 HETATM 9 O O3B LMT . . . PB 9 231.679 243.796 248.279 1 96.94 ? O3B LMT 316 5 1 HETATM 10 O O4' LMT . . . PB 9 230.705 246.398 247.76 1 96.94 ? O4' LMT 316 5 1 HETATM 11 O O5B LMT . . . PB 9 234.053 246.623 246.87 1 96.94 ? O5B LMT 316 5 1 HETATM 12 O O6B LMT . . . PB 9 234.362 249.048 247.935 1 96.94 ? O6B LMT 316 5 1 HETATM 13 C C1' LMT . . . PB 9 240.013 245.004 247.837 1 96.94 ? C1' LMT 316 5 1 HETATM 14 C C2' LMT . . . PB 9 239.098 244.057 248.646 1 96.94 ? C2' LMT 316 5 1 HETATM 15 C C3' LMT . . . PB 9 237.668 244.018 248.049 1 96.94 ? C3' LMT 316 5 1 HETATM 16 C C4' LMT . . . PB 9 237.14 245.439 247.827 1 96.94 ? C4' LMT 316 5 1 HETATM 17 C C5' LMT . . . PB 9 238.214 246.113 246.956 1 96.94 ? C5' LMT 316 5 1 HETATM 18 C C6' LMT . . . PB 9 237.806 247.436 246.373 1 96.94 ? C6' LMT 316 5 1 HETATM 19 O O1' LMT . . . PB 9 241.176 245.223 248.515 1 96.94 ? O1' LMT 316 5 1 HETATM 20 O O2' LMT . . . PB 9 239.617 242.797 248.575 1 96.94 ? O2' LMT 316 5 1 HETATM 21 O O3' LMT . . . PB 9 236.825 243.329 248.867 1 96.94 ? O3' LMT 316 5 1 HETATM 22 O O5' LMT . . . PB 9 239.387 246.267 247.7 1 96.94 ? O5' LMT 316 5 1 HETATM 23 O O6' LMT . . . PB 9 236.806 247.158 245.484 1 96.94 ? O6' LMT 316 5 1 HETATM 24 C C1 LMT . . . PB 9 241.915 246.335 248.069 1 96.94 ? C1 LMT 316 5 1 HETATM 25 C C2 LMT . . . PB 9 243.283 246.141 248.648 1 96.94 ? C2 LMT 316 5 1 HETATM 26 C C3 LMT . . . PB 9 244.068 244.99 248.118 1 96.94 ? C3 LMT 316 5 1 HETATM 27 C C4 LMT . . . PB 9 245.352 244.915 248.899 1 96.94 ? C4 LMT 316 5 1 HETATM 28 C C5 LMT . . . PB 9 246.301 243.982 248.23 1 96.94 ? C5 LMT 316 5 1 HETATM 29 C C6 LMT . . . PB 9 247.292 243.409 249.185 1 96.94 ? C6 LMT 316 5 1 HETATM 30 C C7 LMT . . . PB 9 247.989 242.242 248.553 1 96.94 ? C7 LMT 316 5 1 HETATM 31 C C8 LMT . . . PB 9 248.722 242.714 247.346 1 96.94 ? C8 LMT 316 5 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #