data_8WCO # _model_server_result.job_id U09g8Iz8HQohveiGwphDeg _model_server_result.datetime_utc '2024-12-26 14:44:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8WCO # _exptl.entry_id 8WCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.04 _cell.angle_gamma 90 _cell.entry_id 8WCO _cell.length_a 95.874 _cell.length_b 79.144 _cell.length_c 121.515 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 8WCO _atom_sites.fract_transf_matrix[1][1] 0.01043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002225 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ACO A 1 301 301 ACO ACO . E 2 ACO B 1 301 301 ACO ACO . F 2 ACO C 1 301 302 ACO ACO . G 3 HOH A 1 401 43 HOH HOH . G 3 HOH A 2 402 39 HOH HOH . G 3 HOH A 3 403 1 HOH HOH . G 3 HOH A 4 404 33 HOH HOH . G 3 HOH A 5 405 2 HOH HOH . G 3 HOH A 6 406 24 HOH HOH . G 3 HOH A 7 407 23 HOH HOH . G 3 HOH A 8 408 41 HOH HOH . G 3 HOH A 9 409 14 HOH HOH . G 3 HOH A 10 410 13 HOH HOH . G 3 HOH A 11 411 35 HOH HOH . G 3 HOH A 12 412 16 HOH HOH . G 3 HOH A 13 413 32 HOH HOH . G 3 HOH A 14 414 28 HOH HOH . G 3 HOH A 15 415 38 HOH HOH . G 3 HOH A 16 416 5 HOH HOH . G 3 HOH A 17 417 25 HOH HOH . G 3 HOH A 18 418 18 HOH HOH . G 3 HOH A 19 419 9 HOH HOH . G 3 HOH A 20 420 4 HOH HOH . G 3 HOH A 21 421 29 HOH HOH . H 3 HOH B 1 401 20 HOH HOH . H 3 HOH B 2 402 7 HOH HOH . H 3 HOH B 3 403 44 HOH HOH . H 3 HOH B 4 404 3 HOH HOH . H 3 HOH B 5 405 12 HOH HOH . H 3 HOH B 6 406 31 HOH HOH . H 3 HOH B 7 407 40 HOH HOH . H 3 HOH B 8 408 8 HOH HOH . H 3 HOH B 9 409 22 HOH HOH . H 3 HOH B 10 410 11 HOH HOH . H 3 HOH B 11 411 26 HOH HOH . I 3 HOH C 1 401 36 HOH HOH . I 3 HOH C 2 402 37 HOH HOH . I 3 HOH C 3 403 15 HOH HOH . I 3 HOH C 4 404 10 HOH HOH . I 3 HOH C 5 405 19 HOH HOH . I 3 HOH C 6 406 34 HOH HOH . I 3 HOH C 7 407 6 HOH HOH . I 3 HOH C 8 408 27 HOH HOH . I 3 HOH C 9 409 17 HOH HOH . I 3 HOH C 10 410 21 HOH HOH . I 3 HOH C 11 411 42 HOH HOH . I 3 HOH C 12 412 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . D 2 33.705 25.324 0.688 1 25.21 ? N1A ACO 301 A 1 HETATM 2 C C2A ACO . . . D 2 33.957 26.231 -0.263 1 24.4 ? C2A ACO 301 A 1 HETATM 3 N N3A ACO . . . D 2 35.115 26.77 -0.629 1 18.33 ? N3A ACO 301 A 1 HETATM 4 C C4A ACO . . . D 2 36.117 26.274 0.11 1 22.4 ? C4A ACO 301 A 1 HETATM 5 C C5A ACO . . . D 2 36.019 25.339 1.115 1 24.41 ? C5A ACO 301 A 1 HETATM 6 C C6A ACO . . . D 2 34.739 24.842 1.412 1 23.47 ? C6A ACO 301 A 1 HETATM 7 N N6A ACO . . . D 2 34.5 23.946 2.362 1 29.68 ? N6A ACO 301 A 1 HETATM 8 N N7A ACO . . . D 2 37.272 25.074 1.646 1 21.68 ? N7A ACO 301 A 1 HETATM 9 C C8A ACO . . . D 2 38.088 25.837 0.965 1 22.72 ? C8A ACO 301 A 1 HETATM 10 N N9A ACO . . . D 2 37.442 26.59 0.014 1 27.32 ? N9A ACO 301 A 1 HETATM 11 C C1B ACO . . . D 2 38.008 27.557 -0.921 1 43.27 ? C1B ACO 301 A 1 HETATM 12 C C2B ACO . . . D 2 38.69 28.746 -0.244 1 35.04 ? C2B ACO 301 A 1 HETATM 13 O O2B ACO . . . D 2 37.851 29.874 -0.195 1 35.42 ? O2B ACO 301 A 1 HETATM 14 C C3B ACO . . . D 2 39.899 28.955 -1.149 1 33.86 ? C3B ACO 301 A 1 HETATM 15 O O3B ACO . . . D 2 39.498 29.611 -2.346 1 45.25 ? O3B ACO 301 A 1 HETATM 16 P P3B ACO . . . D 2 40.278 30.991 -2.588 1 47.88 ? P3B ACO 301 A 1 HETATM 17 O O7A ACO . . . D 2 41.712 30.642 -2.892 1 45.87 ? O7A ACO 301 A 1 HETATM 18 O O8A ACO . . . D 2 39.604 31.641 -3.765 1 28.43 ? O8A ACO 301 A 1 HETATM 19 O O9A ACO . . . D 2 40.147 31.803 -1.321 1 29.99 ? O9A ACO 301 A 1 HETATM 20 C C4B ACO . . . D 2 40.265 27.512 -1.409 1 29.3 ? C4B ACO 301 A 1 HETATM 21 O O4B ACO . . . D 2 38.985 26.911 -1.705 1 27.63 ? O4B ACO 301 A 1 HETATM 22 C C5B ACO . . . D 2 40.867 26.785 -0.237 1 31.71 ? C5B ACO 301 A 1 HETATM 23 O O5B ACO . . . D 2 42.287 26.959 -0.21 1 29.15 ? O5B ACO 301 A 1 HETATM 24 P P1A ACO . . . D 2 43.026 26.107 0.913 1 35.38 ? P1A ACO 301 A 1 HETATM 25 O O1A ACO . . . D 2 44.278 26.809 1.31 1 36.99 ? O1A ACO 301 A 1 HETATM 26 O O2A ACO . . . D 2 43.11 24.689 0.467 1 32.43 ? O2A ACO 301 A 1 HETATM 27 O O3A ACO . . . D 2 41.971 26.183 2.115 1 31.43 ? O3A ACO 301 A 1 HETATM 28 P P2A ACO . . . D 2 42.119 26.017 3.696 1 18.07 ? P2A ACO 301 A 1 HETATM 29 O O4A ACO . . . D 2 43.264 25.117 3.989 1 46.31 ? O4A ACO 301 A 1 HETATM 30 O O5A ACO . . . D 2 42.072 27.352 4.343 1 36.07 ? O5A ACO 301 A 1 HETATM 31 O O6A ACO . . . D 2 40.789 25.228 4.072 1 69.6 ? O6A ACO 301 A 1 HETATM 32 C CBP ACO . . . D 2 39.544 23.813 5.576 1 26.15 ? CBP ACO 301 A 1 HETATM 33 C CCP ACO . . . D 2 40.882 24.029 4.885 1 33.38 ? CCP ACO 301 A 1 HETATM 34 C CDP ACO . . . D 2 39.502 22.41 6.184 1 101.5 ? CDP ACO 301 A 1 HETATM 35 C CEP ACO . . . D 2 39.399 24.837 6.701 1 32.76 ? CEP ACO 301 A 1 HETATM 36 C CAP ACO . . . D 2 38.408 23.99 4.565 1 30.24 ? CAP ACO 301 A 1 HETATM 37 O OAP ACO . . . D 2 38.644 23.189 3.426 1 25.17 ? OAP ACO 301 A 1 HETATM 38 C C9P ACO . . . D 2 37.058 23.645 5.155 1 27.28 ? C9P ACO 301 A 1 HETATM 39 O O9P ACO . . . D 2 36.59 24.322 6.062 1 31.66 ? O9P ACO 301 A 1 HETATM 40 N N8P ACO . . . D 2 36.443 22.587 4.656 1 29.33 ? N8P ACO 301 A 1 HETATM 41 C C7P ACO . . . D 2 35.202 22.073 5.207 1 69.39 ? C7P ACO 301 A 1 HETATM 42 C C6P ACO . . . D 2 35.362 21.636 6.635 1 34.77 ? C6P ACO 301 A 1 HETATM 43 C C5P ACO . . . D 2 34.024 21.594 7.334 1 39.33 ? C5P ACO 301 A 1 HETATM 44 O O5P ACO . . . D 2 33.274 22.565 7.335 1 38.21 ? O5P ACO 301 A 1 HETATM 45 N N4P ACO . . . D 2 33.71 20.472 7.973 1 33.16 ? N4P ACO 301 A 1 HETATM 46 C C3P ACO . . . D 2 33.072 20.498 9.274 1 48.79 ? C3P ACO 301 A 1 HETATM 47 C C2P ACO . . . D 2 32.473 19.182 9.645 1 39.28 ? C2P ACO 301 A 1 HETATM 48 S S1P ACO . . . D 2 32.416 18.056 8.235 1 61.13 ? S1P ACO 301 A 1 HETATM 49 C C ACO . . . D 2 33.466 16.782 8.789 1 20.05 ? C ACO 301 A 1 HETATM 50 O O ACO . . . D 2 34.466 16.454 8.216 1 32.79 ? O ACO 301 A 1 HETATM 51 C CH3 ACO . . . D 2 32.979 16.124 10.027 1 125.3 ? CH3 ACO 301 A 1 HETATM 52 H H2A ACO . . . D 2 33.181 26.541 -0.755 1 29.29 ? H2A ACO 301 A 1 HETATM 53 H H61A ACO . . . D 2 35.142 23.452 2.652 1 35.62 ? H61A ACO 301 A 1 HETATM 54 H H62A ACO . . . D 2 33.706 23.866 2.683 1 35.62 ? H62A ACO 301 A 1 HETATM 55 H H8A ACO . . . D 2 39.043 25.854 1.135 1 27.27 ? H8A ACO 301 A 1 HETATM 56 H H1B ACO . . . D 2 37.301 27.891 -1.495 1 51.92 ? H1B ACO 301 A 1 HETATM 57 H H2B ACO . . . D 2 38.973 28.511 0.653 1 42.04 ? H2B ACO 301 A 1 HETATM 58 H HO2A ACO . . . D 2 38.294 30.544 -0.441 1 42.51 ? HO2A ACO 301 A 1 HETATM 59 H H3B ACO . . . D 2 40.612 29.433 -0.697 1 40.63 ? H3B ACO 301 A 1 HETATM 60 H H4B ACO . . . D 2 40.855 27.443 -2.176 1 35.16 ? H4B ACO 301 A 1 HETATM 61 H H51A ACO . . . D 2 40.654 25.841 -0.297 1 38.05 ? H51A ACO 301 A 1 HETATM 62 H H52A ACO . . . D 2 40.491 27.134 0.586 1 38.05 ? H52A ACO 301 A 1 HETATM 63 H H121 ACO . . . D 2 41.581 24.129 5.55 1 40.06 ? H121 ACO 301 A 1 HETATM 64 H H122 ACO . . . D 2 41.093 23.263 4.328 1 40.06 ? H122 ACO 301 A 1 HETATM 65 H H131 ACO . . . D 2 39.511 21.748 5.475 1 121.8 ? H131 ACO 301 A 1 HETATM 66 H H132 ACO . . . D 2 40.277 22.282 6.753 1 121.8 ? H132 ACO 301 A 1 HETATM 67 H H133 ACO . . . D 2 38.696 22.308 6.713 1 121.8 ? H133 ACO 301 A 1 HETATM 68 H H141 ACO . . . D 2 40.223 24.876 7.211 1 39.31 ? H141 ACO 301 A 1 HETATM 69 H H142 ACO . . . D 2 38.673 24.574 7.289 1 39.31 ? H142 ACO 301 A 1 HETATM 70 H H143 ACO . . . D 2 39.209 25.71 6.324 1 39.31 ? H143 ACO 301 A 1 HETATM 71 H H10 ACO . . . D 2 38.393 24.921 4.293 1 36.28 ? H10 ACO 301 A 1 HETATM 72 H HO1 ACO . . . D 2 38.323 23.571 2.75 1 30.21 ? HO1 ACO 301 A 1 HETATM 73 H HN8 ACO . . . D 2 36.793 22.182 3.983 1 35.2 ? HN8 ACO 301 A 1 HETATM 74 H H71 ACO . . . D 2 34.904 21.319 4.675 1 83.27 ? H71 ACO 301 A 1 HETATM 75 H H72 ACO . . . D 2 34.522 22.763 5.157 1 83.27 ? H72 ACO 301 A 1 HETATM 76 H H61 ACO . . . D 2 35.949 22.247 7.107 1 41.72 ? H61 ACO 301 A 1 HETATM 77 H H62 ACO . . . D 2 35.763 20.753 6.662 1 41.72 ? H62 ACO 301 A 1 HETATM 78 H HN4 ACO . . . D 2 33.89 19.717 7.603 1 39.8 ? HN4 ACO 301 A 1 HETATM 79 H H31 ACO . . . D 2 32.373 21.17 9.269 1 58.54 ? H31 ACO 301 A 1 HETATM 80 H H32 ACO . . . D 2 33.728 20.747 9.944 1 58.54 ? H32 ACO 301 A 1 HETATM 81 H H21 ACO . . . D 2 31.57 19.326 9.968 1 47.13 ? H21 ACO 301 A 1 HETATM 82 H H22 ACO . . . D 2 32.994 18.785 10.361 1 47.13 ? H22 ACO 301 A 1 HETATM 83 H HH31 ACO . . . D 2 32.091 15.765 9.874 1 150.36 ? HH31 ACO 301 A 1 HETATM 84 H HH32 ACO . . . D 2 33.581 15.401 10.264 1 150.36 ? HH32 ACO 301 A 1 HETATM 85 H HH33 ACO . . . D 2 32.946 16.767 10.753 1 150.36 ? HH33 ACO 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 85 #