data_8WCO # _model_server_result.job_id 0f5az88dPjU60kwFNDGSoQ _model_server_result.datetime_utc '2024-12-26 14:51:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 8WCO # _exptl.entry_id 8WCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.04 _cell.angle_gamma 90 _cell.entry_id 8WCO _cell.length_a 95.874 _cell.length_b 79.144 _cell.length_c 121.515 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 8WCO _atom_sites.fract_transf_matrix[1][1] 0.01043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002225 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ACO A 1 301 301 ACO ACO . E 2 ACO B 1 301 301 ACO ACO . F 2 ACO C 1 301 302 ACO ACO . G 3 HOH A 1 401 43 HOH HOH . G 3 HOH A 2 402 39 HOH HOH . G 3 HOH A 3 403 1 HOH HOH . G 3 HOH A 4 404 33 HOH HOH . G 3 HOH A 5 405 2 HOH HOH . G 3 HOH A 6 406 24 HOH HOH . G 3 HOH A 7 407 23 HOH HOH . G 3 HOH A 8 408 41 HOH HOH . G 3 HOH A 9 409 14 HOH HOH . G 3 HOH A 10 410 13 HOH HOH . G 3 HOH A 11 411 35 HOH HOH . G 3 HOH A 12 412 16 HOH HOH . G 3 HOH A 13 413 32 HOH HOH . G 3 HOH A 14 414 28 HOH HOH . G 3 HOH A 15 415 38 HOH HOH . G 3 HOH A 16 416 5 HOH HOH . G 3 HOH A 17 417 25 HOH HOH . G 3 HOH A 18 418 18 HOH HOH . G 3 HOH A 19 419 9 HOH HOH . G 3 HOH A 20 420 4 HOH HOH . G 3 HOH A 21 421 29 HOH HOH . H 3 HOH B 1 401 20 HOH HOH . H 3 HOH B 2 402 7 HOH HOH . H 3 HOH B 3 403 44 HOH HOH . H 3 HOH B 4 404 3 HOH HOH . H 3 HOH B 5 405 12 HOH HOH . H 3 HOH B 6 406 31 HOH HOH . H 3 HOH B 7 407 40 HOH HOH . H 3 HOH B 8 408 8 HOH HOH . H 3 HOH B 9 409 22 HOH HOH . H 3 HOH B 10 410 11 HOH HOH . H 3 HOH B 11 411 26 HOH HOH . I 3 HOH C 1 401 36 HOH HOH . I 3 HOH C 2 402 37 HOH HOH . I 3 HOH C 3 403 15 HOH HOH . I 3 HOH C 4 404 10 HOH HOH . I 3 HOH C 5 405 19 HOH HOH . I 3 HOH C 6 406 34 HOH HOH . I 3 HOH C 7 407 6 HOH HOH . I 3 HOH C 8 408 27 HOH HOH . I 3 HOH C 9 409 17 HOH HOH . I 3 HOH C 10 410 21 HOH HOH . I 3 HOH C 11 411 42 HOH HOH . I 3 HOH C 12 412 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . E 2 23.808 -29.762 -15.116 1 29.68 ? N1A ACO 301 B 1 HETATM 2 C C2A ACO . . . E 2 24.157 -30.838 -15.831 1 73.59 ? C2A ACO 301 B 1 HETATM 3 N N3A ACO . . . E 2 24.842 -30.913 -16.967 1 24.93 ? N3A ACO 301 B 1 HETATM 4 C C4A ACO . . . E 2 25.189 -29.688 -17.385 1 35.03 ? C4A ACO 301 B 1 HETATM 5 C C5A ACO . . . E 2 24.908 -28.492 -16.764 1 34.15 ? C5A ACO 301 B 1 HETATM 6 C C6A ACO . . . E 2 24.177 -28.542 -15.566 1 28.02 ? C6A ACO 301 B 1 HETATM 7 N N6A ACO . . . E 2 23.838 -27.468 -14.866 1 29.8 ? N6A ACO 301 B 1 HETATM 8 N N7A ACO . . . E 2 25.436 -27.438 -17.491 1 27.88 ? N7A ACO 301 B 1 HETATM 9 C C8A ACO . . . E 2 26.017 -28.004 -18.52 1 35.94 ? C8A ACO 301 B 1 HETATM 10 N N9A ACO . . . E 2 25.9 -29.376 -18.51 1 40.47 ? N9A ACO 301 B 1 HETATM 11 C C1B ACO . . . E 2 26.414 -30.351 -19.477 1 37.37 ? C1B ACO 301 B 1 HETATM 12 C C2B ACO . . . E 2 25.812 -30.239 -20.878 1 40.28 ? C2B ACO 301 B 1 HETATM 13 O O2B ACO . . . E 2 24.813 -31.207 -21.105 1 44.91 ? O2B ACO 301 B 1 HETATM 14 C C3B ACO . . . E 2 27.04 -30.451 -21.763 1 32.67 ? C3B ACO 301 B 1 HETATM 15 O O3B ACO . . . E 2 27.371 -31.831 -21.85 1 49.46 ? O3B ACO 301 B 1 HETATM 16 P P3B ACO . . . E 2 27.199 -32.396 -23.346 1 60.76 ? P3B ACO 301 B 1 HETATM 17 O O7A ACO . . . E 2 27.377 -33.891 -23.265 1 47.66 ? O7A ACO 301 B 1 HETATM 18 O O8A ACO . . . E 2 28.277 -31.746 -24.182 1 55.81 ? O8A ACO 301 B 1 HETATM 19 O O9A ACO . . . E 2 25.813 -32.008 -23.802 1 48.03 ? O9A ACO 301 B 1 HETATM 20 C C4B ACO . . . E 2 28.074 -29.705 -20.954 1 31.84 ? C4B ACO 301 B 1 HETATM 21 O O4B ACO . . . E 2 27.804 -30.156 -19.608 1 43.21 ? O4B ACO 301 B 1 HETATM 22 C C5B ACO . . . E 2 27.958 -28.206 -20.984 1 34.94 ? C5B ACO 301 B 1 HETATM 23 O O5B ACO . . . E 2 28.728 -27.659 -22.06 1 37.82 ? O5B ACO 301 B 1 HETATM 24 P P1A ACO . . . E 2 28.887 -26.077 -21.985 1 29.35 ? P1A ACO 301 B 1 HETATM 25 O O1A ACO . . . E 2 29.064 -25.533 -23.36 1 69.73 ? O1A ACO 301 B 1 HETATM 26 O O2A ACO . . . E 2 29.909 -25.737 -20.961 1 35.71 ? O2A ACO 301 B 1 HETATM 27 O O3A ACO . . . E 2 27.457 -25.644 -21.418 1 43.71 ? O3A ACO 301 B 1 HETATM 28 P P2A ACO . . . E 2 26.475 -24.422 -21.739 1 28.2 ? P2A ACO 301 B 1 HETATM 29 O O4A ACO . . . E 2 27.279 -23.203 -22.018 1 19.58 ? O4A ACO 301 B 1 HETATM 30 O O5A ACO . . . E 2 25.453 -24.86 -22.727 1 24.03 ? O5A ACO 301 B 1 HETATM 31 O O6A ACO . . . E 2 25.733 -24.229 -20.338 1 29.9 ? O6A ACO 301 B 1 HETATM 32 C CBP ACO . . . E 2 25.117 -22.969 -18.38 1 28.56 ? CBP ACO 301 B 1 HETATM 33 C CCP ACO . . . E 2 26.217 -23.236 -19.399 1 26.29 ? CCP ACO 301 B 1 HETATM 34 C CDP ACO . . . E 2 25.542 -21.819 -17.467 1 27.48 ? CDP ACO 301 B 1 HETATM 35 C CEP ACO . . . E 2 23.846 -22.555 -19.12 1 25.93 ? CEP ACO 301 B 1 HETATM 36 C CAP ACO . . . E 2 24.845 -24.228 -17.549 1 37.79 ? CAP ACO 301 B 1 HETATM 37 O OAP ACO . . . E 2 25.992 -24.586 -16.804 1 28.36 ? OAP ACO 301 B 1 HETATM 38 C C9P ACO . . . E 2 23.653 -24.073 -16.622 1 37.5 ? C9P ACO 301 B 1 HETATM 39 O O9P ACO . . . E 2 22.518 -24.114 -17.083 1 50.59 ? O9P ACO 301 B 1 HETATM 40 N N8P ACO . . . E 2 23.906 -23.869 -15.338 1 29.51 ? N8P ACO 301 B 1 HETATM 41 C C7P ACO . . . E 2 23.009 -24.283 -14.269 1 60.89 ? C7P ACO 301 B 1 HETATM 42 C C6P ACO . . . E 2 21.705 -23.524 -14.245 1 134.29 ? C6P ACO 301 B 1 HETATM 43 C C5P ACO . . . E 2 21.806 -22.257 -13.427 1 41.36 ? C5P ACO 301 B 1 HETATM 44 O O5P ACO . . . E 2 22.516 -21.327 -13.785 1 62.03 ? O5P ACO 301 B 1 HETATM 45 N N4P ACO . . . E 2 21.12 -22.229 -12.285 1 46.04 ? N4P ACO 301 B 1 HETATM 46 C C3P ACO . . . E 2 20.798 -21.007 -11.569 1 136.29 ? C3P ACO 301 B 1 HETATM 47 C C2P ACO . . . E 2 22.018 -20.163 -11.33 1 45.48 ? C2P ACO 301 B 1 HETATM 48 S S1P ACO . . . E 2 21.928 -19.219 -9.793 1 28.52 ? S1P ACO 301 B 1 HETATM 49 C C ACO . . . E 2 20.45 -18.276 -10.04 1 61.12 ? C ACO 301 B 1 HETATM 50 O O ACO . . . E 2 19.834 -18.245 -11.077 1 53.69 ? O ACO 301 B 1 HETATM 51 C CH3 ACO . . . E 2 20.024 -17.538 -8.821 1 46.95 ? CH3 ACO 301 B 1 HETATM 52 H H2A ACO . . . E 2 23.867 -31.688 -15.466 1 88.31 ? H2A ACO 301 B 1 HETATM 53 H H61A ACO . . . E 2 23.221 -27.526 -14.27 1 35.76 ? H61A ACO 301 B 1 HETATM 54 H H62A ACO . . . E 2 24.242 -26.722 -15.009 1 35.76 ? H62A ACO 301 B 1 HETATM 55 H H8A ACO . . . E 2 26.47 -27.487 -19.204 1 43.13 ? H8A ACO 301 B 1 HETATM 56 H H1B ACO . . . E 2 26.245 -31.245 -19.14 1 44.84 ? H1B ACO 301 B 1 HETATM 57 H H2B ACO . . . E 2 25.447 -29.351 -21.019 1 48.33 ? H2B ACO 301 B 1 HETATM 58 H HO2A ACO . . . E 2 24.89 -31.497 -21.889 1 53.89 ? HO2A ACO 301 B 1 HETATM 59 H H3B ACO . . . E 2 26.921 -30.056 -22.641 1 39.21 ? H3B ACO 301 B 1 HETATM 60 H H4B ACO . . . E 2 28.968 -29.969 -21.221 1 38.21 ? H4B ACO 301 B 1 HETATM 61 H H51A ACO . . . E 2 28.272 -27.841 -20.142 1 41.92 ? H51A ACO 301 B 1 HETATM 62 H H52A ACO . . . E 2 27.027 -27.958 -21.099 1 41.92 ? H52A ACO 301 B 1 HETATM 63 H H121 ACO . . . E 2 26.439 -22.414 -19.864 1 31.55 ? H121 ACO 301 B 1 HETATM 64 H H122 ACO . . . E 2 27.012 -23.561 -18.948 1 31.55 ? H122 ACO 301 B 1 HETATM 65 H H131 ACO . . . E 2 24.846 -21.65 -16.813 1 32.97 ? H131 ACO 301 B 1 HETATM 66 H H132 ACO . . . E 2 25.686 -21.02 -17.998 1 32.97 ? H132 ACO 301 B 1 HETATM 67 H H133 ACO . . . E 2 26.364 -22.054 -17.008 1 32.97 ? H133 ACO 301 B 1 HETATM 68 H H141 ACO . . . E 2 23.436 -23.335 -19.525 1 31.12 ? H141 ACO 301 B 1 HETATM 69 H H142 ACO . . . E 2 24.07 -21.914 -19.813 1 31.12 ? H142 ACO 301 B 1 HETATM 70 H H143 ACO . . . E 2 23.224 -22.149 -18.497 1 31.12 ? H143 ACO 301 B 1 HETATM 71 H H10 ACO . . . E 2 24.649 -24.948 -18.168 1 45.34 ? H10 ACO 301 B 1 HETATM 72 H HO1 ACO . . . E 2 26.083 -25.421 -16.831 1 34.03 ? HO1 ACO 301 B 1 HETATM 73 H HN8 ACO . . . E 2 24.639 -23.473 -15.123 1 35.41 ? HN8 ACO 301 B 1 HETATM 74 H H71 ACO . . . E 2 23.458 -24.162 -13.418 1 73.07 ? H71 ACO 301 B 1 HETATM 75 H H72 ACO . . . E 2 22.815 -25.228 -14.37 1 73.07 ? H72 ACO 301 B 1 HETATM 76 H H61 ACO . . . E 2 21.011 -24.087 -13.868 1 161.15 ? H61 ACO 301 B 1 HETATM 77 H H62 ACO . . . E 2 21.441 -23.293 -15.149 1 161.15 ? H62 ACO 301 B 1 HETATM 78 H HN4 ACO . . . E 2 20.85 -22.978 -11.961 1 55.25 ? HN4 ACO 301 B 1 HETATM 79 H H31 ACO . . . E 2 20.393 -21.233 -10.717 1 163.55 ? H31 ACO 301 B 1 HETATM 80 H H32 ACO . . . E 2 20.153 -20.498 -12.085 1 163.55 ? H32 ACO 301 B 1 HETATM 81 H H21 ACO . . . E 2 22.123 -19.545 -12.071 1 54.58 ? H21 ACO 301 B 1 HETATM 82 H H22 ACO . . . E 2 22.8 -20.736 -11.304 1 54.58 ? H22 ACO 301 B 1 HETATM 83 H HH31 ACO . . . E 2 20.031 -16.584 -8.996 1 56.34 ? HH31 ACO 301 B 1 HETATM 84 H HH32 ACO . . . E 2 20.633 -17.737 -8.093 1 56.34 ? HH32 ACO 301 B 1 HETATM 85 H HH33 ACO . . . E 2 19.126 -17.811 -8.575 1 56.34 ? HH33 ACO 301 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 85 #