data_8WD9
#
_model_server_result.job_id            WjoVAX6Eksejfo_CUD1Q3A 
_model_server_result.datetime_utc      '2024-11-14 01:02:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wd9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    8WD9 
#
_exptl.entry_id    8WD9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              594.992 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WD9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WD9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D N CYS 1 A CYS 25 1_555 E C1 PLM . A PLM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? 
covale ? covale2 D SG CYS 1 A CYS 25 1_555 F C37 9XX . A 9XX 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
#
_chem_comp.formula           'C38 H74 O4' 
_chem_comp.formula_weight    594.992 
_chem_comp.id                9XX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(S)-1-(palmitoyloxy)propan-2-yl (S)-10-methyloctadecanoate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C36 C27 9XX sing 1 n n 
C30 C29 9XX sing 2 n n 
C28 C27 9XX sing 3 n n 
C28 C29 9XX sing 4 n n 
C27 C26 9XX sing 5 n n 
C26 C25 9XX sing 6 n n 
C25 C24 9XX sing 7 n n 
C5 C6 9XX sing 8 n n 
C6 C7 9XX sing 9 n n 
C8 C7 9XX sing 10 n n 
C8 C9 9XX sing 11 n n 
C24 C23 9XX sing 12 n n 
C9 C10 9XX sing 13 n n 
C23 C22 9XX sing 14 n n 
C10 C11 9XX sing 15 n n 
C11 C12 9XX sing 16 n n 
C22 C21 9XX sing 17 n n 
C12 C13 9XX sing 18 n n 
C21 C20 9XX sing 19 n n 
C13 C14 9XX sing 20 n n 
C20 C19 9XX sing 21 n n 
C19 C18 9XX sing 22 n n 
C14 C15 9XX sing 23 n n 
C15 O6 9XX doub 24 n n 
C15 O 9XX sing 25 n n 
C18 O1 9XX sing 26 n n 
C18 O2 9XX doub 27 n n 
C17 O1 9XX sing 28 n n 
C17 C16 9XX sing 29 n n 
C17 C37 9XX sing 30 n n 
O C16 9XX sing 31 n n 
C21 H1 9XX sing 32 n n 
C21 H2 9XX sing 33 n n 
C23 H3 9XX sing 34 n n 
C23 H4 9XX sing 35 n n 
C6 H5 9XX sing 36 n n 
C6 H6 9XX sing 37 n n 
C7 H7 9XX sing 38 n n 
C7 H8 9XX sing 39 n n 
C8 H9 9XX sing 40 n n 
C8 H10 9XX sing 41 n n 
C11 H11 9XX sing 42 n n 
C11 H12 9XX sing 43 n n 
C13 H13 9XX sing 44 n n 
C13 H14 9XX sing 45 n n 
C14 H15 9XX sing 46 n n 
C14 H16 9XX sing 47 n n 
C16 H17 9XX sing 48 n n 
C16 H18 9XX sing 49 n n 
C17 H19 9XX sing 50 n n 
C10 H20 9XX sing 51 n n 
C10 H21 9XX sing 52 n n 
C12 H22 9XX sing 53 n n 
C12 H23 9XX sing 54 n n 
C19 H24 9XX sing 55 n n 
C19 H25 9XX sing 56 n n 
C20 H26 9XX sing 57 n n 
C20 H27 9XX sing 58 n n 
C22 H28 9XX sing 59 n n 
C22 H29 9XX sing 60 n n 
C24 H30 9XX sing 61 n n 
C24 H31 9XX sing 62 n n 
C25 H32 9XX sing 63 n n 
C25 H33 9XX sing 64 n n 
C26 H34 9XX sing 65 n n 
C26 H35 9XX sing 66 n n 
C27 H36 9XX sing 67 n n 
C28 H37 9XX sing 68 n n 
C28 H38 9XX sing 69 n n 
C29 H39 9XX sing 70 n n 
C29 H40 9XX sing 71 n n 
C30 H41 9XX sing 72 n n 
C30 H42 9XX sing 73 n n 
C36 H44 9XX sing 74 n n 
C36 H45 9XX sing 75 n n 
C36 H46 9XX sing 76 n n 
C37 H47 9XX sing 77 n n 
C37 H48 9XX sing 78 n n 
C37 H49 9XX sing 79 n n 
C5 H50 9XX sing 80 n n 
C5 H51 9XX sing 81 n n 
C9 H53 9XX sing 82 n n 
C9 H54 9XX sing 83 n n 
C5 C4 9XX sing 84 n n 
C4 C3 9XX sing 85 n n 
C3 C2 9XX sing 86 n n 
C2 C1 9XX sing 87 n n 
C30 C31 9XX sing 88 n n 
C31 C32 9XX sing 89 n n 
C32 C33 9XX sing 90 n n 
C33 C34 9XX sing 91 n n 
C34 C35 9XX sing 92 n n 
C4 H43 9XX sing 93 n n 
C4 H52 9XX sing 94 n n 
C3 H55 9XX sing 95 n n 
C3 H56 9XX sing 96 n n 
C2 H57 9XX sing 97 n n 
C2 H58 9XX sing 98 n n 
C1 H59 9XX sing 99 n n 
C1 H60 9XX sing 100 n n 
C31 H62 9XX sing 101 n n 
C31 H63 9XX sing 102 n n 
C32 H64 9XX sing 103 n n 
C32 H65 9XX sing 104 n n 
C33 H66 9XX sing 105 n n 
C33 H67 9XX sing 106 n n 
C34 H68 9XX sing 107 n n 
C34 H69 9XX sing 108 n n 
C35 H70 9XX sing 109 n n 
C35 H71 9XX sing 110 n n 
C35 H72 9XX sing 111 n n 
C1 C 9XX sing 112 n n 
C H61 9XX sing 113 n n 
C H73 9XX sing 114 n n 
C H74 9XX sing 115 n n 
#
_atom_sites.entry_id                     8WD9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 PLM A 1 601 301 PLM PLM . 
F 6 9XX A 1 602 302 9XX 9XX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 9XX . . . F 6 174.333 172.039 166.128 1 79.14 ? C21 9XX 602 A 1 
HETATM 2 C C23 9XX . . . F 6 173.349 171.03 164.054 1 79.14 ? C23 9XX 602 A 1 
HETATM 3 C C6 9XX . . . F 6 179.832 168.336 163.393 1 79.14 ? C6 9XX 602 A 1 
HETATM 4 C C7 9XX . . . F 6 179.108 169.639 163.715 1 79.14 ? C7 9XX 602 A 1 
HETATM 5 C C8 9XX . . . F 6 178.971 169.774 165.228 1 79.14 ? C8 9XX 602 A 1 
HETATM 6 C C11 9XX . . . F 6 178.498 172.411 167.76 1 79.14 ? C11 9XX 602 A 1 
HETATM 7 C C13 9XX . . . F 6 178.281 173.277 170.08 1 79.14 ? C13 9XX 602 A 1 
HETATM 8 C C14 9XX . . . F 6 177.472 172.04 170.465 1 79.14 ? C14 9XX 602 A 1 
HETATM 9 C C15 9XX . . . F 6 176.801 172.272 171.815 1 79.14 ? C15 9XX 602 A 1 
HETATM 10 C C16 9XX . . . F 6 174.726 172.544 170.697 1 79.14 ? C16 9XX 602 A 1 
HETATM 11 C C17 9XX . . . F 6 174.445 173.97 170.222 1 79.14 ? C17 9XX 602 A 1 
HETATM 12 O O 9XX . . . F 6 175.434 172.57 171.905 1 79.14 ? O 9XX 602 A 1 
HETATM 13 C C10 9XX . . . F 6 179.424 171.575 166.882 1 79.14 ? C10 9XX 602 A 1 
HETATM 14 C C12 9XX . . . F 6 179.27 172.907 168.979 1 79.14 ? C12 9XX 602 A 1 
HETATM 15 C C18 9XX . . . F 6 174.659 174.203 167.894 1 79.14 ? C18 9XX 602 A 1 
HETATM 16 C C19 9XX . . . F 6 174.076 174.479 166.512 1 79.14 ? C19 9XX 602 A 1 
HETATM 17 C C20 9XX . . . F 6 173.396 173.227 165.968 1 79.14 ? C20 9XX 602 A 1 
HETATM 18 C C22 9XX . . . F 6 174.638 171.44 164.758 1 79.14 ? C22 9XX 602 A 1 
HETATM 19 C C24 9XX . . . F 6 173.413 169.542 163.716 1 79.14 ? C24 9XX 602 A 1 
HETATM 20 C C25 9XX . . . F 6 174.579 169.267 162.77 1 79.14 ? C25 9XX 602 A 1 
HETATM 21 C C26 9XX . . . F 6 174.418 167.876 162.159 1 79.14 ? C26 9XX 602 A 1 
HETATM 22 C C27 9XX . . . F 6 175.778 167.254 161.842 1 79.14 ? C27 9XX 602 A 1 
HETATM 23 C C28 9XX . . . F 6 176.422 166.761 163.134 1 79.14 ? C28 9XX 602 A 1 
HETATM 24 C C29 9XX . . . F 6 177.236 165.498 162.862 1 79.14 ? C29 9XX 602 A 1 
HETATM 25 C C30 9XX . . . F 6 176.328 164.4 162.314 1 79.14 ? C30 9XX 602 A 1 
HETATM 26 C C36 9XX . . . F 6 176.69 168.28 161.173 1 79.14 ? C36 9XX 602 A 1 
HETATM 27 C C37 9XX . . . F 6 173.546 174.685 171.229 1 79.14 ? C37 9XX 602 A 1 
HETATM 28 C C5 9XX . . . F 6 180.849 168.582 162.282 1 79.14 ? C5 9XX 602 A 1 
HETATM 29 C C9 9XX . . . F 6 178.71 171.235 165.578 1 79.14 ? C9 9XX 602 A 1 
HETATM 30 O O1 9XX . . . F 6 173.814 173.929 168.974 1 79.14 ? O1 9XX 602 A 1 
HETATM 31 O O2 9XX . . . F 6 175.831 174.223 168.052 1 79.14 ? O2 9XX 602 A 1 
HETATM 32 O O6 9XX . . . F 6 177.448 172.2 172.803 1 79.14 ? O6 9XX 602 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#