data_8WE8 # _model_server_result.job_id PeuVwWASfhLsI1WBWsAJiQ _model_server_result.datetime_utc '2024-11-23 09:57:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8we8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":2309}' # _entry.id 8WE8 # _exptl.entry_id 8WE8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 408.876 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description amlodipine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WE8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 7 3 2 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 7 4 3 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 E 1 NAG D 1102 NAG 5 n E NAG 2 E 2 NAG D 1103 NAG 5 n E NAG 3 E 3 NAG D 1104 NAG 6 n F NAG 1 F 1 NAG D 1105 NAG 6 n F NAG 2 F 2 NAG D 1106 NAG 7 n G NAG 1 G 1 NAG D 1107 NAG 7 n G NAG 2 G 2 NAG D 1108 NAG 7 n G NAG 3 G 3 NAG D 1109 NAG 7 n G NAG 4 G 4 NAG D 1110 NAG 6 n H NAG 1 H 1 NAG D 1111 NAG 6 n H NAG 2 H 2 NAG D 1112 NAG 6 n I NAG 1 I 1 NAG D 1114 NAG 6 n I NAG 2 I 2 NAG D 1115 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 298 1_555 A SG CYS 326 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 316 A CYS 316 1_555 A SG CYS 332 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 1058 A CYS 1078 1_555 A SG CYS 1069 A CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 1459 A CYS 1479 1_555 A SG CYS 1475 A CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 303 D CYS 303 1_555 B SG CYS 1044 D CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 404 D CYS 404 1_555 B SG CYS 1071 D CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 667 D CYS 667 1_555 B SG CYS 697 D CYS 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 904 D CYS 904 1_555 B SG CYS 974 D CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 996 D CYS 996 1_555 B SG CYS 1026 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 999 D CYS 999 1_555 B SG CYS 1024 D CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 D SG CYS 3 B CYS 3 1_555 D SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 D SG CYS 17 B CYS 17 1_555 D SG CYS 39 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 D SG CYS 41 B CYS 41 1_555 D SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 D SG CYS 53 B CYS 53 1_555 D SG CYS 58 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 1416 A ASN 1436 1_555 O C1 NAG . A NAG 2306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 B ND2 ASN 92 D ASN 92 1_555 T C1 NAG . D NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 184 D ASN 184 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 B ND2 ASN 348 D ASN 348 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 468 D ASN 468 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 B ND2 ASN 613 D ASN 613 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 781 D ASN 781 1_555 U C1 NAG . D NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 B ND2 ASN 895 D ASN 895 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 E O4 NAG . E NAG 2 1_555 E C1 NAG . E NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 G O4 NAG . G NAG 2 1_555 G C1 NAG . G NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale14 G O4 NAG . G NAG 3 1_555 G C1 NAG . G NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale15 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OD2 ASP 151 A ASP 151 1_555 S CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc2 A OE1 GLU 363 A GLU 363 1_555 J CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc3 A OE2 GLU 363 A GLU 363 1_555 J CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc4 A OE1 GLU 706 A GLU 706 1_555 J CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc5 A OE1 GLU 1115 A GLU 1135 1_555 J CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc6 A OE2 GLU 1115 A GLU 1135 1_555 J CA CA . A CA 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc7 B OG SER 261 D SER 261 1_555 S CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 B OG SER 263 D SER 263 1_555 S CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'C20 H25 Cl N2 O5' _chem_comp.formula_weight 408.876 _chem_comp.id 6UB _chem_comp.mon_nstd_flag . _chem_comp.name amlodipine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '~{O}3-ethyl ~{O}5-methyl (4~{S})-2-(2-azanylethoxymethyl)-4-(2-chlorophenyl)-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAH CAJ 6UB doub 133 n y CAH CAI 6UB sing 134 n y CAJ CAZ 6UB sing 135 n y CAI CAK 6UB doub 136 n y CLAG CAZ 6UB sing 137 n n CAZ CBA 6UB doub 138 n y CAK CBA 6UB sing 139 n y CBA CBB 6UB sing 140 n n OAE CAU 6UB doub 141 n n CBB CAX 6UB sing 142 n n CBB CAY 6UB sing 143 n n CAX CAU 6UB sing 144 n n CAX CAT 6UB doub 145 n n CAU OAQ 6UB sing 146 n n CAY CAV 6UB sing 147 n n CAY CAW 6UB doub 148 n n CAL OAS 6UB sing 149 n n CAL CAA 6UB sing 150 n n CAV OAF 6UB doub 151 n n CAV OAS 6UB sing 152 n n NAP CAT 6UB sing 153 n n NAP CAW 6UB sing 154 n n CAT CAC 6UB sing 155 n n CAW C24 6UB sing 156 n n OAQ CAB 6UB sing 157 n n C24 O25 6UB sing 158 n n O25 C26 6UB sing 159 n n C26 C27 6UB sing 160 n n C27 N28 6UB sing 161 n n CAA H1 6UB sing 162 n n CAA H2 6UB sing 163 n n CAA H3 6UB sing 164 n n CAL H4 6UB sing 165 n n CAL H5 6UB sing 166 n n NAP H6 6UB sing 167 n n CBB H9 6UB sing 168 n n CAK H10 6UB sing 169 n n CAI H11 6UB sing 170 n n CAH H12 6UB sing 171 n n CAJ H13 6UB sing 172 n n CAB H14 6UB sing 173 n n CAB H15 6UB sing 174 n n CAB H16 6UB sing 175 n n CAC H17 6UB sing 176 n n CAC H18 6UB sing 177 n n CAC H19 6UB sing 178 n n C24 H20 6UB sing 179 n n C24 H21 6UB sing 180 n n C26 H22 6UB sing 181 n n C26 H23 6UB sing 182 n n C27 H24 6UB sing 183 n n C27 H25 6UB sing 184 n n N28 H26 6UB sing 185 n n N28 H27 6UB sing 186 n n # _atom_sites.entry_id 8WE8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 8 CA A 1 2301 1701 CA CA . K 9 CLR A 1 2302 1706 CLR CLR . L 9 CLR A 1 2303 1709 CLR CLR . M 9 CLR A 1 2304 1710 CLR CLR . N 9 CLR A 1 2305 1712 CLR CLR . O 10 NAG A 1 2306 1713 NAG NAG . P 11 PT5 A 1 2307 1714 PT5 PT5 . Q 12 3PE A 1 2308 1715 3PE 3PE . R 13 6UB A 1 2309 1716 6UB 6UB . S 8 CA D 1 1201 1702 CA CA . T 10 NAG D 1 1202 1101 NAG NAG . U 10 NAG D 1 1203 1113 NAG NAG . V 9 CLR B 1 101 1708 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 6UB . . . R 13 152.424 169.58 147.45 1 20 ? CAA 6UB 2309 A 1 HETATM 2 C CAL 6UB . . . R 13 152.472 168.345 148.334 1 20 ? CAL 6UB 2309 A 1 HETATM 3 O OAS 6UB . . . R 13 152.55 168.695 149.685 1 20 ? OAS 6UB 2309 A 1 HETATM 4 C CAV 6UB . . . R 13 152.343 167.582 150.494 1 20 ? CAV 6UB 2309 A 1 HETATM 5 O OAF 6UB . . . R 13 152.96 166.617 150.256 1 20 ? OAF 6UB 2309 A 1 HETATM 6 C CAY 6UB . . . R 13 151.316 167.618 151.627 1 20 ? CAY 6UB 2309 A 1 HETATM 7 C CAW 6UB . . . R 13 151.385 166.771 152.652 1 20 ? CAW 6UB 2309 A 1 HETATM 8 N NAP 6UB . . . R 13 150.86 167.136 153.936 1 20 ? NAP 6UB 2309 A 1 HETATM 9 C CAT 6UB . . . R 13 150.123 168.341 154.128 1 20 ? CAT 6UB 2309 A 1 HETATM 10 C CAX 6UB . . . R 13 150.086 169.257 153.202 1 20 ? CAX 6UB 2309 A 1 HETATM 11 C CBB 6UB . . . R 13 150.728 169.032 151.828 1 20 ? CBB 6UB 2309 A 1 HETATM 12 C CBA 6UB . . . R 13 149.712 169.39 150.717 1 20 ? CBA 6UB 2309 A 1 HETATM 13 C CAK 6UB . . . R 13 149.943 170.626 150.15 1 20 ? CAK 6UB 2309 A 1 HETATM 14 C CAI 6UB . . . R 13 149.15 171.113 149.15 1 20 ? CAI 6UB 2309 A 1 HETATM 15 C CAH 6UB . . . R 13 148.1 170.353 148.688 1 20 ? CAH 6UB 2309 A 1 HETATM 16 C CAJ 6UB . . . R 13 147.851 169.115 149.227 1 20 ? CAJ 6UB 2309 A 1 HETATM 17 C CAZ 6UB . . . R 13 148.641 168.621 150.235 1 20 ? CAZ 6UB 2309 A 1 HETATM 18 CL CLAG 6UB . . . R 13 148.163 167.011 150.799 1 20 ? CLAG 6UB 2309 A 1 HETATM 19 C CAU 6UB . . . R 13 149.944 170.712 153.609 1 20 ? CAU 6UB 2309 A 1 HETATM 20 O OAE 6UB . . . R 13 150.393 171.128 154.61 1 20 ? OAE 6UB 2309 A 1 HETATM 21 O OAQ 6UB . . . R 13 149.282 171.582 152.765 1 20 ? OAQ 6UB 2309 A 1 HETATM 22 C CAB 6UB . . . R 13 149.75 172.888 152.842 1 20 ? CAB 6UB 2309 A 1 HETATM 23 C CAC 6UB . . . R 13 149.133 168.371 155.271 1 20 ? CAC 6UB 2309 A 1 HETATM 24 C C24 6UB . . . R 13 151.825 165.321 152.543 1 20 ? C24 6UB 2309 A 1 HETATM 25 O O25 6UB . . . R 13 151.373 164.763 151.359 1 20 ? O25 6UB 2309 A 1 HETATM 26 C C26 6UB . . . R 13 150.259 163.93 151.479 1 20 ? C26 6UB 2309 A 1 HETATM 27 C C27 6UB . . . R 13 150.672 162.494 151.177 1 20 ? C27 6UB 2309 A 1 HETATM 28 N N28 6UB . . . R 13 149.553 161.601 151.4 1 20 ? N28 6UB 2309 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 28 #