data_8WEA # _model_server_result.job_id 2gcaDe5OLVKP5cK6MYzJ-A _model_server_result.datetime_utc '2024-11-21 14:09:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2303}' # _entry.id 8WEA # _exptl.entry_id 8WEA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 511.512 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2-bromanyl-4,5-dimethoxy-phenyl)methyl]-4-[2-[2-[(1~{R},2~{S},5~{R})-6,6-dimethyl-2-bicyclo[3.1.1]heptanyl]ethoxy]ethyl]morpholin-4-ium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WEA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 5 3 2 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 5 4 3 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG D 1102 NAG 3 n C NAG 2 B 2 NAG D 1103 NAG 3 n C NAG 3 B 3 NAG D 1104 NAG 4 n D NAG 1 C 1 NAG D 1105 NAG 4 n D NAG 2 C 2 NAG D 1106 NAG 5 n E NAG 1 E 1 NAG D 1107 NAG 5 n E NAG 2 E 2 NAG D 1108 NAG 5 n E NAG 3 E 3 NAG D 1109 NAG 5 n E NAG 4 E 4 NAG D 1110 NAG 4 n F NAG 1 F 1 NAG D 1111 NAG 4 n F NAG 2 F 2 NAG D 1112 NAG 4 n G NAG 1 G 1 NAG D 1114 NAG 4 n G NAG 2 G 2 NAG D 1115 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 298 1_555 A SG CYS 326 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 316 A CYS 316 1_555 A SG CYS 332 A CYS 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 1058 A CYS 1078 1_555 A SG CYS 1069 A CYS 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 1459 A CYS 1479 1_555 A SG CYS 1475 A CYS 1495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 303 D CYS 303 1_555 B SG CYS 1044 D CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 404 D CYS 404 1_555 B SG CYS 1071 D CYS 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 667 D CYS 667 1_555 B SG CYS 697 D CYS 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 B SG CYS 904 D CYS 904 1_555 B SG CYS 974 D CYS 974 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 996 D CYS 996 1_555 B SG CYS 1026 D CYS 1026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 999 D CYS 999 1_555 B SG CYS 1024 D CYS 1024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B ND2 ASN 92 D ASN 92 1_555 L C1 NAG . D NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B ND2 ASN 184 D ASN 184 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B ND2 ASN 348 D ASN 348 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 B ND2 ASN 468 D ASN 468 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 B ND2 ASN 613 D ASN 613 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale6 B ND2 ASN 781 D ASN 781 1_555 M C1 NAG . D NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale7 B ND2 ASN 895 D ASN 895 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale8 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 C O4 NAG . B NAG 2 1_555 C C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale10 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 E O4 NAG . E NAG 2 1_555 E C1 NAG . E NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale13 E O4 NAG . E NAG 3 1_555 E C1 NAG . E NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 B OG SER 261 D SER 261 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc2 B OG SER 263 D SER 263 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? # _chem_comp.formula 'C26 H41 Br N O4 1' _chem_comp.formula_weight 511.512 _chem_comp.id WB9 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(2-bromanyl-4,5-dimethoxy-phenyl)methyl]-4-[2-[2-[(1~{R},2~{S},5~{R})-6,6-dimethyl-2-bicyclo[3.1.1]heptanyl]ethoxy]ethyl]morpholin-4-ium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 WB9 sing 504 n n C02 C03 WB9 sing 505 n n C02 C07 WB9 sing 506 n n C02 C32 WB9 sing 507 n n C03 C04 WB9 sing 508 n n C03 C08 WB9 sing 509 n n C04 C05 WB9 sing 510 n n C05 C06 WB9 sing 511 n n C06 C07 WB9 sing 512 n n C06 C09 WB9 sing 513 n n C07 C08 WB9 sing 514 n n C09 C10 WB9 sing 515 n n C10 O11 WB9 sing 516 n n O11 C12 WB9 sing 517 n n C12 C13 WB9 sing 518 n n C13 N14 WB9 sing 519 n n N14 C15 WB9 sing 520 n n N14 C19 WB9 sing 521 n n N14 C20 WB9 sing 522 n n C15 C16 WB9 sing 523 n n C16 O17 WB9 sing 524 n n O17 C18 WB9 sing 525 n n C18 C19 WB9 sing 526 n n C20 C21 WB9 sing 527 n n C21 C22 WB9 doub 528 n y C21 C26 WB9 sing 529 n y C22 C23 WB9 sing 530 n y C23 C24 WB9 doub 531 n y C23 O30 WB9 sing 532 n n C24 C25 WB9 sing 533 n y C24 O28 WB9 sing 534 n n C25 C26 WB9 doub 535 n y C26 BR1 WB9 sing 536 n n O28 C29 WB9 sing 537 n n O30 C31 WB9 sing 538 n n C01 H1 WB9 sing 539 n n C01 H2 WB9 sing 540 n n C01 H3 WB9 sing 541 n n C03 H4 WB9 sing 542 n n C04 H5 WB9 sing 543 n n C05 H6 WB9 sing 544 n n C05 H7 WB9 sing 545 n n C06 H8 WB9 sing 546 n n C07 H9 WB9 sing 547 n n C08 H10 WB9 sing 548 n n C08 H11 WB9 sing 549 n n C09 H12 WB9 sing 550 n n C09 H13 WB9 sing 551 n n C10 H14 WB9 sing 552 n n C10 H15 WB9 sing 553 n n C12 H16 WB9 sing 554 n n C12 H17 WB9 sing 555 n n C13 H18 WB9 sing 556 n n C13 H19 WB9 sing 557 n n C15 H20 WB9 sing 558 n n C15 H21 WB9 sing 559 n n C16 H22 WB9 sing 560 n n C16 H23 WB9 sing 561 n n C18 H24 WB9 sing 562 n n C18 H25 WB9 sing 563 n n C19 H26 WB9 sing 564 n n C19 H27 WB9 sing 565 n n C20 H28 WB9 sing 566 n n C20 H29 WB9 sing 567 n n C22 H30 WB9 sing 568 n n C25 H31 WB9 sing 569 n n C29 H32 WB9 sing 570 n n C29 H33 WB9 sing 571 n n C29 H34 WB9 sing 572 n n C31 H35 WB9 sing 573 n n C31 H36 WB9 sing 574 n n C31 H37 WB9 sing 575 n n C32 H38 WB9 sing 576 n n C32 H39 WB9 sing 577 n n C32 H40 WB9 sing 578 n n C04 H41 WB9 sing 579 n n # _atom_sites.entry_id 8WEA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 CA A 1 2301 1701 CA CA . I 7 9Z9 A 1 2302 1703 9Z9 9Z9 . J 8 WB9 A 1 2303 1704 WB9 PIN . K 6 CA D 1 1201 1702 CA CA . L 9 NAG D 1 1202 1101 NAG NAG . M 9 NAG D 1 1203 1113 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 WB9 . . . J 8 158.618 175.317 137.933 1 20 ? C01 WB9 2303 A 1 HETATM 2 C C02 WB9 . . . J 8 157.963 175.146 136.525 1 20 ? C02 WB9 2303 A 1 HETATM 3 C C03 WB9 . . . J 8 158.709 173.786 136.681 1 20 ? C03 WB9 2303 A 1 HETATM 4 C C04 WB9 . . . J 8 159.392 174.756 135.703 1 20 ? C04 WB9 2303 A 1 HETATM 5 C C05 WB9 . . . J 8 158.531 174.856 134.352 1 20 ? C05 WB9 2303 A 1 HETATM 6 C C06 WB9 . . . J 8 157.155 175.355 135.02 1 20 ? C06 WB9 2303 A 1 HETATM 7 C C07 WB9 . . . J 8 156.723 174.311 136.089 1 20 ? C07 WB9 2303 A 1 HETATM 8 C C08 WB9 . . . J 8 157.37 173.11 136.737 1 20 ? C08 WB9 2303 A 1 HETATM 9 C C09 WB9 . . . J 8 156.047 175.565 133.898 1 20 ? C09 WB9 2303 A 1 HETATM 10 C C10 WB9 . . . J 8 156.564 174.984 132.552 1 20 ? C10 WB9 2303 A 1 HETATM 11 O O11 WB9 . . . J 8 156.224 173.607 132.554 1 20 ? O11 WB9 2303 A 1 HETATM 12 C C12 WB9 . . . J 8 155.856 173.115 131.274 1 20 ? C12 WB9 2303 A 1 HETATM 13 C C13 WB9 . . . J 8 156.65 173.942 130.22 1 20 ? C13 WB9 2303 A 1 HETATM 14 N N14 WB9 . . . J 8 155.813 174.253 129.022 1 20 ? N14 WB9 2303 A 1 HETATM 15 C C15 WB9 . . . J 8 156.266 175.493 128.487 1 20 ? C15 WB9 2303 A 1 HETATM 16 C C16 WB9 . . . J 8 155.972 176.573 129.525 1 20 ? C16 WB9 2303 A 1 HETATM 17 O O17 WB9 . . . J 8 154.564 176.811 129.577 1 20 ? O17 WB9 2303 A 1 HETATM 18 C C18 WB9 . . . J 8 153.839 175.719 129.008 1 20 ? C18 WB9 2303 A 1 HETATM 19 C C19 WB9 . . . J 8 154.438 174.366 129.415 1 20 ? C19 WB9 2303 A 1 HETATM 20 C C20 WB9 . . . J 8 155.935 173.135 128.02 1 20 ? C20 WB9 2303 A 1 HETATM 21 C C21 WB9 . . . J 8 156.35 173.608 126.59 1 20 ? C21 WB9 2303 A 1 HETATM 22 C C22 WB9 . . . J 8 157.697 173.743 126.234 1 20 ? C22 WB9 2303 A 1 HETATM 23 C C23 WB9 . . . J 8 158.032 174.154 124.944 1 20 ? C23 WB9 2303 A 1 HETATM 24 C C24 WB9 . . . J 8 157.035 174.431 124.016 1 20 ? C24 WB9 2303 A 1 HETATM 25 C C25 WB9 . . . J 8 155.694 174.279 124.355 1 20 ? C25 WB9 2303 A 1 HETATM 26 C C26 WB9 . . . J 8 155.368 173.868 125.644 1 20 ? C26 WB9 2303 A 1 HETATM 27 BR BR1 WB9 . . . J 8 153.519 173.668 126.138 1 20 ? BR1 WB9 2303 A 1 HETATM 28 O O28 WB9 . . . J 8 157.396 174.823 122.719 1 20 ? O28 WB9 2303 A 1 HETATM 29 C C29 WB9 . . . J 8 157.628 173.674 121.927 1 20 ? C29 WB9 2303 A 1 HETATM 30 O O30 WB9 . . . J 8 159.379 174.323 124.575 1 20 ? O30 WB9 2303 A 1 HETATM 31 C C31 WB9 . . . J 8 159.729 175.69 124.572 1 20 ? C31 WB9 2303 A 1 HETATM 32 C C32 WB9 . . . J 8 156.87 175.8 137.404 1 20 ? C32 WB9 2303 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 637 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #