data_8WEJ # _model_server_result.job_id sd0VPbfkRPRgT4lqX48aIA _model_server_result.datetime_utc '2024-12-23 05:27:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":200}' # _entry.id 8WEJ # _exptl.entry_id 8WEJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WEJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H NAG 1 F 1 NAG B 621 NAG 8 n H NAG 2 F 2 NAG B 622 NAG 8 n H BMA 3 F 3 BMA B 623 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 244 B CYS 244 1_555 B SG CYS 257 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 45 H CYS 22 1_555 F SG CYS 119 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 G SG CYS 46 L CYS 23 1_555 G SG CYS 111 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 B ND2 ASN 132 B ASN 132 1_555 K C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 149 B ASN 149 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 B ND2 ASN 240 B ASN 240 1_555 L C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 H O4 NAG . F NAG 2 1_555 H C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 B NE2 HIS 101 B HIS 101 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 B NE2 HIS 115 B HIS 115 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 B NE2 HIS 209 B HIS 209 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 B NE2 HIS 222 B HIS 222 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 B OD1 ASP 360 B ASP 360 1_555 M MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 M MG MG . B MG 605 1_555 O O1A FDA . B FDA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc7 M MG MG . B MG 605 1_555 O O1P FDA . B FDA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 E OG1 THR 17 E THR 17 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc9 E OG1 THR 35 E THR 35 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 P O3G GTP . E GTP 200 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc11 P O2B GTP . E GTP 200 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 246 n n PG O2G GTP sing 247 n n PG O3G GTP sing 248 n n PG O3B GTP sing 249 n n O2G HOG2 GTP sing 250 n n O3G HOG3 GTP sing 251 n n O3B PB GTP sing 252 n n PB O1B GTP doub 253 n n PB O2B GTP sing 254 n n PB O3A GTP sing 255 n n O2B HOB2 GTP sing 256 n n O3A PA GTP sing 257 n n PA O1A GTP doub 258 n n PA O2A GTP sing 259 n n PA O5' GTP sing 260 n n O2A HOA2 GTP sing 261 n n O5' C5' GTP sing 262 n n C5' C4' GTP sing 263 n n C5' H5' GTP sing 264 n n C5' "H5''" GTP sing 265 n n C4' O4' GTP sing 266 n n C4' C3' GTP sing 267 n n C4' H4' GTP sing 268 n n O4' C1' GTP sing 269 n n C3' O3' GTP sing 270 n n C3' C2' GTP sing 271 n n C3' H3' GTP sing 272 n n O3' HO3' GTP sing 273 n n C2' O2' GTP sing 274 n n C2' C1' GTP sing 275 n n C2' H2' GTP sing 276 n n O2' HO2' GTP sing 277 n n C1' N9 GTP sing 278 n n C1' H1' GTP sing 279 n n N9 C8 GTP sing 280 n y N9 C4 GTP sing 281 n y C8 N7 GTP doub 282 n y C8 H8 GTP sing 283 n n N7 C5 GTP sing 284 n y C5 C6 GTP sing 285 n n C5 C4 GTP doub 286 n y C6 O6 GTP doub 287 n n C6 N1 GTP sing 288 n n N1 C2 GTP sing 289 n n N1 HN1 GTP sing 290 n n C2 N2 GTP sing 291 n n C2 N3 GTP doub 292 n n N2 HN21 GTP sing 293 n n N2 HN22 GTP sing 294 n n N3 C4 GTP sing 295 n n # _atom_sites.entry_id 8WEJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM B 1 601 602 HEM HEM . J 9 HEM B 1 602 603 HEM HEM . K 10 NAG B 1 603 618 NAG NAG . L 10 NAG B 1 604 620 NAG NAG . M 11 MG B 1 605 1001 MG MG . N 12 NDP B 1 606 3601 NDP NDP . O 13 FDA B 1 607 3701 FDA FAD . P 14 GTP E 1 200 200 GTP GTP . Q 11 MG E 1 201 201 MG MG . R 15 HOH B 1 701 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . P 14 154.762 174.543 97.492 1 52.32 ? PG GTP 200 E 1 HETATM 2 O O1G GTP . . . P 14 154.255 174.353 98.901 1 52.32 ? O1G GTP 200 E 1 HETATM 3 O O2G GTP . . . P 14 155.861 173.591 97.087 1 52.32 ? O2G GTP 200 E 1 HETATM 4 O O3G GTP . . . P 14 155.009 175.979 97.107 1 52.32 ? O3G GTP 200 E 1 HETATM 5 O O3B GTP . . . P 14 153.518 174.114 96.569 1 52.32 ? O3B GTP 200 E 1 HETATM 6 P PB GTP . . . P 14 152.145 174.95 96.621 1 52.32 ? PB GTP 200 E 1 HETATM 7 O O1B GTP . . . P 14 151.226 174.306 97.632 1 52.32 ? O1B GTP 200 E 1 HETATM 8 O O2B GTP . . . P 14 152.45 176.427 96.696 1 52.32 ? O2B GTP 200 E 1 HETATM 9 O O3A GTP . . . P 14 151.567 174.648 95.16 1 52.32 ? O3A GTP 200 E 1 HETATM 10 P PA GTP . . . P 14 150.97 175.847 94.279 1 52.32 ? PA GTP 200 E 1 HETATM 11 O O1A GTP . . . P 14 149.715 176.351 94.949 1 52.32 ? O1A GTP 200 E 1 HETATM 12 O O2A GTP . . . P 14 152.077 176.817 93.938 1 52.32 ? O2A GTP 200 E 1 HETATM 13 O O5' GTP . . . P 14 150.574 175.054 92.948 1 52.32 ? O5' GTP 200 E 1 HETATM 14 C C5' GTP . . . P 14 150.292 175.784 91.769 1 52.32 ? C5' GTP 200 E 1 HETATM 15 C C4' GTP . . . P 14 149.6 174.87 90.765 1 52.32 ? C4' GTP 200 E 1 HETATM 16 O O4' GTP . . . P 14 148.48 174.22 91.376 1 52.32 ? O4' GTP 200 E 1 HETATM 17 C C3' GTP . . . P 14 149.084 175.688 89.582 1 52.32 ? C3' GTP 200 E 1 HETATM 18 O O3' GTP . . . P 14 149.825 175.363 88.411 1 52.32 ? O3' GTP 200 E 1 HETATM 19 C C2' GTP . . . P 14 147.614 175.333 89.446 1 52.32 ? C2' GTP 200 E 1 HETATM 20 O O2' GTP . . . P 14 147.325 174.822 88.148 1 52.32 ? O2' GTP 200 E 1 HETATM 21 C C1' GTP . . . P 14 147.347 174.268 90.498 1 52.32 ? C1' GTP 200 E 1 HETATM 22 N N9 GTP . . . P 14 146.141 174.601 91.275 1 52.32 ? N9 GTP 200 E 1 HETATM 23 C C8 GTP . . . P 14 146.142 175.02 92.554 1 52.32 ? C8 GTP 200 E 1 HETATM 24 N N7 GTP . . . P 14 144.879 175.239 92.997 1 52.32 ? N7 GTP 200 E 1 HETATM 25 C C5 GTP . . . P 14 144.054 174.95 91.982 1 52.32 ? C5 GTP 200 E 1 HETATM 26 C C6 GTP . . . P 14 142.591 174.961 91.759 1 52.32 ? C6 GTP 200 E 1 HETATM 27 O O6 GTP . . . P 14 141.805 175.306 92.667 1 52.32 ? O6 GTP 200 E 1 HETATM 28 N N1 GTP . . . P 14 142.13 174.588 90.554 1 52.32 ? N1 GTP 200 E 1 HETATM 29 C C2 GTP . . . P 14 142.95 174.207 89.546 1 52.32 ? C2 GTP 200 E 1 HETATM 30 N N2 GTP . . . P 14 142.397 173.847 88.362 1 52.32 ? N2 GTP 200 E 1 HETATM 31 N N3 GTP . . . P 14 144.308 174.169 89.667 1 52.32 ? N3 GTP 200 E 1 HETATM 32 C C4 GTP . . . P 14 144.888 174.524 90.842 1 52.32 ? C4 GTP 200 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #