data_8WEJ # _model_server_result.job_id rt8e7vefJMPyngI5z973Rw _model_server_result.datetime_utc '2024-11-05 05:09:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 8WEJ # _exptl.entry_id 8WEJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WEJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 J N N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H NAG 1 F 1 NAG B 621 NAG 8 n H NAG 2 F 2 NAG B 622 NAG 8 n H BMA 3 F 3 BMA B 623 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 244 B CYS 244 1_555 B SG CYS 257 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 45 H CYS 22 1_555 F SG CYS 119 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 G SG CYS 46 L CYS 23 1_555 G SG CYS 111 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 B ND2 ASN 132 B ASN 132 1_555 K C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 149 B ASN 149 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 B ND2 ASN 240 B ASN 240 1_555 L C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 H O4 NAG . F NAG 2 1_555 H C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 B NE2 HIS 101 B HIS 101 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 B NE2 HIS 115 B HIS 115 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 B NE2 HIS 209 B HIS 209 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 B NE2 HIS 222 B HIS 222 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 B OD1 ASP 360 B ASP 360 1_555 M MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 M MG MG . B MG 605 1_555 O O1A FDA . B FDA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc7 M MG MG . B MG 605 1_555 O O1P FDA . B FDA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 E OG1 THR 17 E THR 17 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc9 E OG1 THR 35 E THR 35 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 P O3G GTP . E GTP 200 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc11 P O2B GTP . E GTP 200 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 296 n n CHA C4D HEM doub 297 n n CHA HHA HEM sing 298 n n CHB C4A HEM sing 299 n n CHB C1B HEM doub 300 n n CHB HHB HEM sing 301 n n CHC C4B HEM sing 302 n n CHC C1C HEM doub 303 n n CHC HHC HEM sing 304 n n CHD C4C HEM doub 305 n n CHD C1D HEM sing 306 n n CHD HHD HEM sing 307 n n C1A C2A HEM doub 308 n y C1A NA HEM sing 309 n y C2A C3A HEM sing 310 n y C2A CAA HEM sing 311 n n C3A C4A HEM doub 312 n y C3A CMA HEM sing 313 n n C4A NA HEM sing 314 n y CMA HMA HEM sing 315 n n CMA HMAA HEM sing 316 n n CMA HMAB HEM sing 317 n n CAA CBA HEM sing 318 n n CAA HAA HEM sing 319 n n CAA HAAA HEM sing 320 n n CBA CGA HEM sing 321 n n CBA HBA HEM sing 322 n n CBA HBAA HEM sing 323 n n CGA O1A HEM doub 324 n n CGA O2A HEM sing 325 n n C1B C2B HEM sing 326 n n C1B NB HEM sing 327 n n C2B C3B HEM doub 328 n n C2B CMB HEM sing 329 n n C3B C4B HEM sing 330 n n C3B CAB HEM sing 331 n n C4B NB HEM doub 332 n n CMB HMB HEM sing 333 n n CMB HMBA HEM sing 334 n n CMB HMBB HEM sing 335 n n CAB CBB HEM doub 336 n n CAB HAB HEM sing 337 n n CBB HBB HEM sing 338 n n CBB HBBA HEM sing 339 n n C1C C2C HEM sing 340 n y C1C NC HEM sing 341 n y C2C C3C HEM doub 342 n y C2C CMC HEM sing 343 n n C3C C4C HEM sing 344 n y C3C CAC HEM sing 345 n n C4C NC HEM sing 346 n y CMC HMC HEM sing 347 n n CMC HMCA HEM sing 348 n n CMC HMCB HEM sing 349 n n CAC CBC HEM doub 350 n n CAC HAC HEM sing 351 n n CBC HBC HEM sing 352 n n CBC HBCA HEM sing 353 n n C1D C2D HEM sing 354 n n C1D ND HEM doub 355 n n C2D C3D HEM doub 356 n n C2D CMD HEM sing 357 n n C3D C4D HEM sing 358 n n C3D CAD HEM sing 359 n n C4D ND HEM sing 360 n n CMD HMD HEM sing 361 n n CMD HMDA HEM sing 362 n n CMD HMDB HEM sing 363 n n CAD CBD HEM sing 364 n n CAD HAD HEM sing 365 n n CAD HADA HEM sing 366 n n CBD CGD HEM sing 367 n n CBD HBD HEM sing 368 n n CBD HBDA HEM sing 369 n n CGD O1D HEM doub 370 n n CGD O2D HEM sing 371 n n O2A H2A HEM sing 372 n n O2D H2D HEM sing 373 n n FE NA HEM sing 374 n n FE NB HEM sing 375 n n FE NC HEM sing 376 n n FE ND HEM sing 377 n n # _atom_sites.entry_id 8WEJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM B 1 601 602 HEM HEM . J 9 HEM B 1 602 603 HEM HEM . K 10 NAG B 1 603 618 NAG NAG . L 10 NAG B 1 604 620 NAG NAG . M 11 MG B 1 605 1001 MG MG . N 12 NDP B 1 606 3601 NDP NDP . O 13 FDA B 1 607 3701 FDA FAD . P 14 GTP E 1 200 200 GTP GTP . Q 11 MG E 1 201 201 MG MG . R 15 HOH B 1 701 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . I 9 172.25 153.409 169.007 1 37.92 ? CHA HEM 601 B 1 HETATM 2 C CHB HEM . . . I 9 169.35 156.748 171.019 1 37.92 ? CHB HEM 601 B 1 HETATM 3 C CHC HEM . . . I 9 168.966 159.118 166.835 1 37.92 ? CHC HEM 601 B 1 HETATM 4 C CHD HEM . . . I 9 171.837 155.77 164.773 1 37.92 ? CHD HEM 601 B 1 HETATM 5 C C1A HEM . . . I 9 171.534 154.137 169.927 1 37.92 ? C1A HEM 601 B 1 HETATM 6 C C2A HEM . . . I 9 171.462 153.882 171.35 1 37.92 ? C2A HEM 601 B 1 HETATM 7 C C3A HEM . . . I 9 170.66 154.81 171.882 1 37.92 ? C3A HEM 601 B 1 HETATM 8 C C4A HEM . . . I 9 170.204 155.685 170.833 1 37.92 ? C4A HEM 601 B 1 HETATM 9 C CMA HEM . . . I 9 170.251 154.98 173.353 1 37.92 ? CMA HEM 601 B 1 HETATM 10 C CAA HEM . . . I 9 172.192 152.744 172.097 1 37.92 ? CAA HEM 601 B 1 HETATM 11 C CBA HEM . . . I 9 173.137 153.411 173.094 1 37.92 ? CBA HEM 601 B 1 HETATM 12 C CGA HEM . . . I 9 174.119 152.43 173.669 1 37.92 ? CGA HEM 601 B 1 HETATM 13 O O1A HEM . . . I 9 174.002 151.207 173.398 1 37.92 ? O1A HEM 601 B 1 HETATM 14 O O2A HEM . . . I 9 175.024 152.891 174.409 1 37.92 ? O2A HEM 601 B 1 HETATM 15 C C1B HEM . . . I 9 168.995 157.69 170.087 1 37.92 ? C1B HEM 601 B 1 HETATM 16 C C2B HEM . . . I 9 168.183 158.859 170.342 1 37.92 ? C2B HEM 601 B 1 HETATM 17 C C3B HEM . . . I 9 168.051 159.539 169.197 1 37.92 ? C3B HEM 601 B 1 HETATM 18 C C4B HEM . . . I 9 168.799 158.813 168.169 1 37.92 ? C4B HEM 601 B 1 HETATM 19 C CMB HEM . . . I 9 167.566 159.229 171.716 1 37.92 ? CMB HEM 601 B 1 HETATM 20 C CAB HEM . . . I 9 167.234 160.857 169.117 1 37.92 ? CAB HEM 601 B 1 HETATM 21 C CBB HEM . . . I 9 167.007 161.562 168.006 1 37.92 ? CBB HEM 601 B 1 HETATM 22 C C1C HEM . . . I 9 169.748 158.436 165.925 1 37.92 ? C1C HEM 601 B 1 HETATM 23 C C2C HEM . . . I 9 170.009 158.87 164.57 1 37.92 ? C2C HEM 601 B 1 HETATM 24 C C3C HEM . . . I 9 170.808 157.974 163.973 1 37.92 ? C3C HEM 601 B 1 HETATM 25 C C4C HEM . . . I 9 171.076 156.912 164.943 1 37.92 ? C4C HEM 601 B 1 HETATM 26 C CMC HEM . . . I 9 169.443 160.175 163.959 1 37.92 ? CMC HEM 601 B 1 HETATM 27 C CAC HEM . . . I 9 171.29 158.127 162.503 1 37.92 ? CAC HEM 601 B 1 HETATM 28 C CBC HEM . . . I 9 172.23 157.37 161.921 1 37.92 ? CBC HEM 601 B 1 HETATM 29 C C1D HEM . . . I 9 172.201 154.861 165.745 1 37.92 ? C1D HEM 601 B 1 HETATM 30 C C2D HEM . . . I 9 173.115 153.757 165.556 1 37.92 ? C2D HEM 601 B 1 HETATM 31 C C3D HEM . . . I 9 173.246 153.097 166.711 1 37.92 ? C3D HEM 601 B 1 HETATM 32 C C4D HEM . . . I 9 172.406 153.756 167.686 1 37.92 ? C4D HEM 601 B 1 HETATM 33 C CMD HEM . . . I 9 173.809 153.432 164.221 1 37.92 ? CMD HEM 601 B 1 HETATM 34 C CAD HEM . . . I 9 174.121 151.851 166.977 1 37.92 ? CAD HEM 601 B 1 HETATM 35 C CBD HEM . . . I 9 175.304 152.241 167.858 1 37.92 ? CBD HEM 601 B 1 HETATM 36 C CGD HEM . . . I 9 176.26 151.081 167.936 1 37.92 ? CGD HEM 601 B 1 HETATM 37 O O1D HEM . . . I 9 177.383 151.265 168.47 1 37.92 ? O1D HEM 601 B 1 HETATM 38 O O2D HEM . . . I 9 175.904 149.972 167.46 1 37.92 ? O2D HEM 601 B 1 HETATM 39 N NA HEM . . . I 9 170.75 155.244 169.645 1 37.92 ? NA HEM 601 B 1 HETATM 40 N NB HEM . . . I 9 169.357 157.693 168.758 1 37.92 ? NB HEM 601 B 1 HETATM 41 N NC HEM . . . I 9 170.411 157.239 166.116 1 37.92 ? NC HEM 601 B 1 HETATM 42 N ND HEM . . . I 9 171.778 154.826 167.061 1 37.92 ? ND HEM 601 B 1 HETATM 43 FE FE HEM . . . I 9 170.648 156.318 167.919 1 37.92 ? FE HEM 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #