data_8WEJ # _model_server_result.job_id 7tro2aVOaINCu43-XtQzTA _model_server_result.datetime_utc '2024-11-05 05:05:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":606}' # _entry.id 8WEJ # _exptl.entry_id 8WEJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WEJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H NAG 1 F 1 NAG B 621 NAG 8 n H NAG 2 F 2 NAG B 622 NAG 8 n H BMA 3 F 3 BMA B 623 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 244 B CYS 244 1_555 B SG CYS 257 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 45 H CYS 22 1_555 F SG CYS 119 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 G SG CYS 46 L CYS 23 1_555 G SG CYS 111 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 B ND2 ASN 132 B ASN 132 1_555 K C1 NAG . B NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 149 B ASN 149 1_555 H C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 B ND2 ASN 240 B ASN 240 1_555 L C1 NAG . B NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 H O4 NAG . F NAG 1 1_555 H C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 H O4 NAG . F NAG 2 1_555 H C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 B NE2 HIS 101 B HIS 101 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 B NE2 HIS 115 B HIS 115 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 B NE2 HIS 209 B HIS 209 1_555 J FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 B NE2 HIS 222 B HIS 222 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 B OD1 ASP 360 B ASP 360 1_555 M MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 M MG MG . B MG 605 1_555 O O1A FDA . B FDA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc7 M MG MG . B MG 605 1_555 O O1P FDA . B FDA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 E OG1 THR 17 E THR 17 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc9 E OG1 THR 35 E THR 35 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc10 P O3G GTP . E GTP 200 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc11 P O2B GTP . E GTP 200 1_555 Q MG MG . E MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 516 n n PA O2A NDP sing 517 n n PA O5B NDP sing 518 n n PA O3 NDP sing 519 n n O2A HOA2 NDP sing 520 n n O5B C5B NDP sing 521 n n C5B C4B NDP sing 522 n n C5B H51A NDP sing 523 n n C5B H52A NDP sing 524 n n C4B O4B NDP sing 525 n n C4B C3B NDP sing 526 n n C4B H4B NDP sing 527 n n O4B C1B NDP sing 528 n n C3B O3B NDP sing 529 n n C3B C2B NDP sing 530 n n C3B H3B NDP sing 531 n n O3B HO3A NDP sing 532 n n C2B O2B NDP sing 533 n n C2B C1B NDP sing 534 n n C2B H2B NDP sing 535 n n O2B P2B NDP sing 536 n n C1B N9A NDP sing 537 n n C1B H1B NDP sing 538 n n N9A C8A NDP sing 539 n y N9A C4A NDP sing 540 n y C8A N7A NDP doub 541 n y C8A H8A NDP sing 542 n n N7A C5A NDP sing 543 n y C5A C6A NDP sing 544 n y C5A C4A NDP doub 545 n y C6A N6A NDP sing 546 n n C6A N1A NDP doub 547 n y N6A H61A NDP sing 548 n n N6A H62A NDP sing 549 n n N1A C2A NDP sing 550 n y C2A N3A NDP doub 551 n y C2A H2A NDP sing 552 n n N3A C4A NDP sing 553 n y O3 PN NDP sing 554 n n PN O1N NDP doub 555 n n PN O2N NDP sing 556 n n PN O5D NDP sing 557 n n O2N H21N NDP sing 558 n n O5D C5D NDP sing 559 n n C5D C4D NDP sing 560 n n C5D H51N NDP sing 561 n n C5D H52N NDP sing 562 n n C4D O4D NDP sing 563 n n C4D C3D NDP sing 564 n n C4D H4D NDP sing 565 n n O4D C1D NDP sing 566 n n C3D O3D NDP sing 567 n n C3D C2D NDP sing 568 n n C3D H3D NDP sing 569 n n O3D HO3N NDP sing 570 n n C2D O2D NDP sing 571 n n C2D C1D NDP sing 572 n n C2D H2D NDP sing 573 n n O2D HO2N NDP sing 574 n n C1D N1N NDP sing 575 n n C1D H1D NDP sing 576 n n N1N C2N NDP sing 577 n n N1N C6N NDP sing 578 n n C2N C3N NDP doub 579 n n C2N H2N NDP sing 580 n n C3N C7N NDP sing 581 n n C3N C4N NDP sing 582 n n C7N O7N NDP doub 583 n n C7N N7N NDP sing 584 n n N7N H71N NDP sing 585 n n N7N H72N NDP sing 586 n n C4N C5N NDP sing 587 n n C4N H41N NDP sing 588 n n C4N H42N NDP sing 589 n n C5N C6N NDP doub 590 n n C5N H5N NDP sing 591 n n C6N H6N NDP sing 592 n n P2B O1X NDP doub 593 n n P2B O2X NDP sing 594 n n P2B O3X NDP sing 595 n n O2X HOP2 NDP sing 596 n n O3X HOP3 NDP sing 597 n n # _atom_sites.entry_id 8WEJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM B 1 601 602 HEM HEM . J 9 HEM B 1 602 603 HEM HEM . K 10 NAG B 1 603 618 NAG NAG . L 10 NAG B 1 604 620 NAG NAG . M 11 MG B 1 605 1001 MG MG . N 12 NDP B 1 606 3601 NDP NDP . O 13 FDA B 1 607 3701 FDA FAD . P 14 GTP E 1 200 200 GTP GTP . Q 11 MG E 1 201 201 MG MG . R 15 HOH B 1 701 701 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . N 12 168.888 175.575 128.044 1 41.17 ? PA NDP 606 B 1 HETATM 2 O O1A NDP . . . N 12 168.228 176.722 128.781 1 41.17 ? O1A NDP 606 B 1 HETATM 3 O O2A NDP . . . N 12 168.952 174.197 128.665 1 41.17 ? O2A NDP 606 B 1 HETATM 4 O O5B NDP . . . N 12 168.188 175.397 126.622 1 41.17 ? O5B NDP 606 B 1 HETATM 5 C C5B NDP . . . N 12 168.991 174.776 125.626 1 41.17 ? C5B NDP 606 B 1 HETATM 6 C C4B NDP . . . N 12 168.14 174.142 124.538 1 41.17 ? C4B NDP 606 B 1 HETATM 7 O O4B NDP . . . N 12 167.482 172.944 124.962 1 41.17 ? O4B NDP 606 B 1 HETATM 8 C C3B NDP . . . N 12 167.04 175.082 124.057 1 41.17 ? C3B NDP 606 B 1 HETATM 9 O O3B NDP . . . N 12 167.317 175.25 122.677 1 41.17 ? O3B NDP 606 B 1 HETATM 10 C C2B NDP . . . N 12 165.716 174.377 124.344 1 41.17 ? C2B NDP 606 B 1 HETATM 11 O O2B NDP . . . N 12 164.687 174.563 123.368 1 41.17 ? O2B NDP 606 B 1 HETATM 12 C C1B NDP . . . N 12 166.177 172.919 124.365 1 41.17 ? C1B NDP 606 B 1 HETATM 13 N N9A NDP . . . N 12 165.257 172.017 125.082 1 41.17 ? N9A NDP 606 B 1 HETATM 14 C C8A NDP . . . N 12 164.829 172.193 126.331 1 41.17 ? C8A NDP 606 B 1 HETATM 15 N N7A NDP . . . N 12 163.988 171.203 126.715 1 41.17 ? N7A NDP 606 B 1 HETATM 16 C C5A NDP . . . N 12 163.872 170.372 125.672 1 41.17 ? C5A NDP 606 B 1 HETATM 17 C C6A NDP . . . N 12 163.132 169.127 125.41 1 41.17 ? C6A NDP 606 B 1 HETATM 18 N N6A NDP . . . N 12 162.346 168.589 126.369 1 41.17 ? N6A NDP 606 B 1 HETATM 19 N N1A NDP . . . N 12 163.283 168.575 124.191 1 41.17 ? N1A NDP 606 B 1 HETATM 20 C C2A NDP . . . N 12 164.072 169.127 123.254 1 41.17 ? C2A NDP 606 B 1 HETATM 21 N N3A NDP . . . N 12 164.775 170.26 123.421 1 41.17 ? N3A NDP 606 B 1 HETATM 22 C C4A NDP . . . N 12 164.707 170.912 124.599 1 41.17 ? C4A NDP 606 B 1 HETATM 23 O O3 NDP . . . N 12 170.362 176.019 127.576 1 41.17 ? O3 NDP 606 B 1 HETATM 24 P PN NDP . . . N 12 171.634 175.942 128.557 1 41.17 ? PN NDP 606 B 1 HETATM 25 O O1N NDP . . . N 12 172.809 176.542 127.817 1 41.17 ? O1N NDP 606 B 1 HETATM 26 O O2N NDP . . . N 12 171.254 176.46 129.92 1 41.17 ? O2N NDP 606 B 1 HETATM 27 O O5D NDP . . . N 12 171.843 174.355 128.698 1 41.17 ? O5D NDP 606 B 1 HETATM 28 C C5D NDP . . . N 12 172.73 173.766 129.647 1 41.17 ? C5D NDP 606 B 1 HETATM 29 C C4D NDP . . . N 12 171.827 173.138 130.694 1 41.17 ? C4D NDP 606 B 1 HETATM 30 O O4D NDP . . . N 12 172.171 171.768 130.902 1 41.17 ? O4D NDP 606 B 1 HETATM 31 C C3D NDP . . . N 12 171.903 173.778 132.098 1 41.17 ? C3D NDP 606 B 1 HETATM 32 O O3D NDP . . . N 12 170.955 174.845 132.284 1 41.17 ? O3D NDP 606 B 1 HETATM 33 C C2D NDP . . . N 12 171.485 172.614 132.975 1 41.17 ? C2D NDP 606 B 1 HETATM 34 O O2D NDP . . . N 12 170.243 172.958 133.587 1 41.17 ? O2D NDP 606 B 1 HETATM 35 C C1D NDP . . . N 12 171.324 171.414 132.019 1 41.17 ? C1D NDP 606 B 1 HETATM 36 N N1N NDP . . . N 12 171.609 170.049 132.55 1 41.17 ? N1N NDP 606 B 1 HETATM 37 C C2N NDP . . . N 12 171.224 169.691 133.785 1 41.17 ? C2N NDP 606 B 1 HETATM 38 C C3N NDP . . . N 12 171.414 168.409 134.312 1 41.17 ? C3N NDP 606 B 1 HETATM 39 C C7N NDP . . . N 12 170.956 168.158 135.73 1 41.17 ? C7N NDP 606 B 1 HETATM 40 O O7N NDP . . . N 12 170.229 168.983 136.254 1 41.17 ? O7N NDP 606 B 1 HETATM 41 N N7N NDP . . . N 12 171.356 167.087 136.427 1 41.17 ? N7N NDP 606 B 1 HETATM 42 C C4N NDP . . . N 12 172.072 167.313 133.485 1 41.17 ? C4N NDP 606 B 1 HETATM 43 C C5N NDP . . . N 12 172.436 167.812 132.173 1 41.17 ? C5N NDP 606 B 1 HETATM 44 C C6N NDP . . . N 12 172.202 169.124 131.781 1 41.17 ? C6N NDP 606 B 1 HETATM 45 P P2B NDP . . . N 12 163.633 175.775 123.524 1 41.17 ? P2B NDP 606 B 1 HETATM 46 O O1X NDP . . . N 12 164.417 177.017 123.173 1 41.17 ? O1X NDP 606 B 1 HETATM 47 O O2X NDP . . . N 12 162.539 175.46 122.528 1 41.17 ? O2X NDP 606 B 1 HETATM 48 O O3X NDP . . . N 12 163.181 175.703 124.961 1 41.17 ? O3X NDP 606 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #