data_8WF4 # _model_server_result.job_id yXiwOuEkP6hniz530x1cEA _model_server_result.datetime_utc '2024-12-09 02:02:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8WF4 # _exptl.entry_id 8WF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.83 _cell.angle_gamma 90 _cell.entry_id 8WF4 _cell.length_a 39.676 _cell.length_b 143.632 _cell.length_c 60.228 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8WF4 _atom_sites.fract_transf_matrix[1][1] 0.025204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002573 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 801 1 EDO EDO . D 2 EDO A 1 802 2 EDO EDO . E 2 EDO B 1 801 3 EDO EDO . F 2 EDO B 1 802 4 EDO EDO . G 3 HOH A 1 901 41 HOH HOH . G 3 HOH A 2 902 38 HOH HOH . G 3 HOH A 3 903 46 HOH HOH . G 3 HOH A 4 904 5 HOH HOH . G 3 HOH A 5 905 7 HOH HOH . G 3 HOH A 6 906 64 HOH HOH . G 3 HOH A 7 907 9 HOH HOH . G 3 HOH A 8 908 13 HOH HOH . G 3 HOH A 9 909 40 HOH HOH . G 3 HOH A 10 910 1 HOH HOH . G 3 HOH A 11 911 6 HOH HOH . G 3 HOH A 12 912 4 HOH HOH . G 3 HOH A 13 913 69 HOH HOH . G 3 HOH A 14 914 3 HOH HOH . G 3 HOH A 15 915 70 HOH HOH . G 3 HOH A 16 916 44 HOH HOH . G 3 HOH A 17 917 10 HOH HOH . G 3 HOH A 18 918 56 HOH HOH . G 3 HOH A 19 919 65 HOH HOH . G 3 HOH A 20 920 17 HOH HOH . G 3 HOH A 21 921 19 HOH HOH . G 3 HOH A 22 922 43 HOH HOH . G 3 HOH A 23 923 16 HOH HOH . G 3 HOH A 24 924 8 HOH HOH . G 3 HOH A 25 925 45 HOH HOH . G 3 HOH A 26 926 12 HOH HOH . G 3 HOH A 27 927 59 HOH HOH . G 3 HOH A 28 928 15 HOH HOH . G 3 HOH A 29 929 2 HOH HOH . G 3 HOH A 30 930 60 HOH HOH . G 3 HOH A 31 931 11 HOH HOH . G 3 HOH A 32 932 68 HOH HOH . G 3 HOH A 33 933 72 HOH HOH . H 3 HOH B 1 901 61 HOH HOH . H 3 HOH B 2 902 23 HOH HOH . H 3 HOH B 3 903 27 HOH HOH . H 3 HOH B 4 904 51 HOH HOH . H 3 HOH B 5 905 62 HOH HOH . H 3 HOH B 6 906 33 HOH HOH . H 3 HOH B 7 907 29 HOH HOH . H 3 HOH B 8 908 18 HOH HOH . H 3 HOH B 9 909 63 HOH HOH . H 3 HOH B 10 910 53 HOH HOH . H 3 HOH B 11 911 28 HOH HOH . H 3 HOH B 12 912 21 HOH HOH . H 3 HOH B 13 913 32 HOH HOH . H 3 HOH B 14 914 54 HOH HOH . H 3 HOH B 15 915 26 HOH HOH . H 3 HOH B 16 916 37 HOH HOH . H 3 HOH B 17 917 36 HOH HOH . H 3 HOH B 18 918 71 HOH HOH . H 3 HOH B 19 919 50 HOH HOH . H 3 HOH B 20 920 30 HOH HOH . H 3 HOH B 21 921 20 HOH HOH . H 3 HOH B 22 922 55 HOH HOH . H 3 HOH B 23 923 22 HOH HOH . H 3 HOH B 24 924 42 HOH HOH . H 3 HOH B 25 925 47 HOH HOH . H 3 HOH B 26 926 14 HOH HOH . H 3 HOH B 27 927 67 HOH HOH . H 3 HOH B 28 928 58 HOH HOH . H 3 HOH B 29 929 24 HOH HOH . H 3 HOH B 30 930 52 HOH HOH . H 3 HOH B 31 931 66 HOH HOH . H 3 HOH B 32 932 35 HOH HOH . H 3 HOH B 33 933 25 HOH HOH . H 3 HOH B 34 934 39 HOH HOH . H 3 HOH B 35 935 34 HOH HOH . H 3 HOH B 36 936 31 HOH HOH . H 3 HOH B 37 937 57 HOH HOH . H 3 HOH B 38 938 48 HOH HOH . H 3 HOH B 39 939 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 23.07 -40.466 4.316 1 74.36 0 C1 EDO 802 A 1 HETATM 2 O O1 EDO . . . D 2 22.056 -41.138 3.595 1 73.24 0 O1 EDO 802 A 1 HETATM 3 C C2 EDO . . . D 2 23.926 -39.612 3.454 1 74.55 0 C2 EDO 802 A 1 HETATM 4 O O2 EDO . . . D 2 24.511 -38.531 4.154 1 74.74 0 O2 EDO 802 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 673 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 4 #