data_8WF6 # _model_server_result.job_id EofZozvSdKDH2f3yCXv5YA _model_server_result.datetime_utc '2024-10-11 00:28:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 8WF6 # _exptl.entry_id 8WF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.52 _cell.angle_gamma 90 _cell.entry_id 8WF6 _cell.length_a 71.31 _cell.length_b 112.24 _cell.length_c 83.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,K,L,M,N 1 1 E,F,G,H,I,J,O,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLY 5 Q GLY 6 1_555 C N SEP 6 Q SEP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C C SEP 6 Q SEP 7 1_555 C N LEU 7 Q LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 D C GLY 5 R GLY 6 1_555 D N SEP 6 R SEP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 D C SEP 6 R SEP 7 1_555 D N LEU 7 R LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 G C GLY 5 E GLY 6 1_555 G N SEP 6 E SEP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 G C SEP 6 E SEP 7 1_555 G N LEU 7 E LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 H C GLY 5 F GLY 6 1_555 H N SEP 6 F SEP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 H C SEP 6 F SEP 7 1_555 H N LEU 7 F LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 308 n n C1 O2 SIN sing 309 n n C1 C2 SIN sing 310 n n O2 HO2 SIN sing 311 n n C2 C3 SIN sing 312 n n C2 H21 SIN sing 313 n n C2 H22 SIN sing 314 n n C3 C4 SIN sing 315 n n C3 H31 SIN sing 316 n n C3 H32 SIN sing 317 n n C4 O3 SIN doub 318 n n C4 O4 SIN sing 319 n n O4 HO4 SIN sing 320 n n # _atom_sites.entry_id 8WF6 _atom_sites.fract_transf_matrix[1][1] 0.014023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001851 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 SIN C 1 301 301 SIN SIN . J 3 SIN D 1 301 301 SIN SIN . K 4 HOH A 1 301 8 HOH HOH . K 4 HOH A 2 302 12 HOH HOH . L 4 HOH B 1 301 13 HOH HOH . L 4 HOH B 2 302 10 HOH HOH . M 4 HOH Q 1 101 4 HOH HOH . N 4 HOH R 1 101 20 HOH HOH . O 4 HOH C 1 401 2 HOH HOH . O 4 HOH C 2 402 11 HOH HOH . O 4 HOH C 3 403 21 HOH HOH . P 4 HOH D 1 401 19 HOH HOH . P 4 HOH D 2 402 14 HOH HOH . P 4 HOH D 3 403 5 HOH HOH . P 4 HOH D 4 404 17 HOH HOH . P 4 HOH D 5 405 18 HOH HOH . P 4 HOH D 6 406 6 HOH HOH . P 4 HOH D 7 407 7 HOH HOH . Q 4 HOH E 1 101 1 HOH HOH . R 4 HOH F 1 101 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . I 3 -21.888 29.02 -25.605 1 57.75 ? C1 SIN 301 C 1 HETATM 2 O O1 SIN . . . I 3 -21.144 28.351 -26.355 1 69.45 ? O1 SIN 301 C 1 HETATM 3 O O2 SIN . . . I 3 -22.435 28.459 -24.631 1 59.61 ? O2 SIN 301 C 1 HETATM 4 C C2 SIN . . . I 3 -22.133 30.483 -25.879 1 51.19 ? C2 SIN 301 C 1 HETATM 5 C C3 SIN . . . I 3 -21.929 31.274 -24.594 1 46.73 ? C3 SIN 301 C 1 HETATM 6 C C4 SIN . . . I 3 -21.893 32.743 -24.929 1 63.16 ? C4 SIN 301 C 1 HETATM 7 O O3 SIN . . . I 3 -21.978 33.121 -26.118 1 55.18 ? O3 SIN 301 C 1 HETATM 8 O O4 SIN . . . I 3 -21.782 33.598 -24.024 1 65.7 ? O4 SIN 301 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #