data_8WFJ # _model_server_result.job_id 80BtlesdDsAcWQwdZFObbw _model_server_result.datetime_utc '2024-12-22 07:51:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8WFJ # _exptl.entry_id 8WFJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 393.451 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ALX5407 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WFJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 166 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 166 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 175 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 175 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.274 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H24 F N O3' _chem_comp.formula_weight 393.451 _chem_comp.id W5F _chem_comp.mon_nstd_flag . _chem_comp.name ALX5407 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-[[(3~{R})-3-(4-fluorophenyl)-3-(4-phenylphenoxy)propyl]-methyl-amino]ethanoic acid;ALX-5407;(R)-NFPS' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O04 C21 W5F doub 374 n n C21 O03 W5F sing 375 n n C21 C10 W5F sing 376 n n C11 N05 W5F sing 377 n n N05 C10 W5F sing 378 n n N05 C08 W5F sing 379 n n C06 C08 W5F sing 380 n n C06 C07 W5F sing 381 n n C18 C23 W5F doub 382 n y C18 C14 W5F sing 383 n y C07 O02 W5F sing 384 n n C07 C09 W5F sing 385 n n C23 C19 W5F sing 386 n y C13 C09 W5F doub 387 n y C13 C16 W5F sing 388 n y O02 C14 W5F sing 389 n n C14 C17 W5F doub 390 n y C09 C12 W5F sing 391 n y C16 C20 W5F doub 392 n y C19 C24 W5F sing 393 n n C19 C22 W5F doub 394 n y C26 C24 W5F doub 395 n y C26 C28 W5F sing 396 n y C24 C25 W5F sing 397 n y C28 C29 W5F doub 398 n y C17 C22 W5F sing 399 n y C25 C27 W5F doub 400 n y C29 C27 W5F sing 401 n y C12 C15 W5F doub 402 n y C20 C15 W5F sing 403 n y C20 F01 W5F sing 404 n n C06 H1 W5F sing 405 n n C06 H2 W5F sing 406 n n C07 H3 W5F sing 407 n n C08 H4 W5F sing 408 n n C08 H5 W5F sing 409 n n C10 H6 W5F sing 410 n n C10 H7 W5F sing 411 n n C11 H8 W5F sing 412 n n C11 H9 W5F sing 413 n n C11 H10 W5F sing 414 n n C12 H11 W5F sing 415 n n C13 H12 W5F sing 416 n n C15 H13 W5F sing 417 n n C16 H14 W5F sing 418 n n C17 H15 W5F sing 419 n n C18 H16 W5F sing 420 n n C22 H17 W5F sing 421 n n C23 H18 W5F sing 422 n n C25 H19 W5F sing 423 n n C26 H20 W5F sing 424 n n C27 H21 W5F sing 425 n n C28 H22 W5F sing 426 n n C29 H23 W5F sing 427 n n O03 H25 W5F sing 428 n n # _atom_sites.entry_id 8WFJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id W5F _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id W5F _pdbx_nonpoly_scheme.auth_mon_id ALX _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C06 W5F . . . B 2 97.679 103.248 101.691 1 69.63 ? C06 W5F 701 A 1 HETATM 2 C C07 W5F . . . B 2 96.52 103.298 102.684 1 78.26 ? C07 W5F 701 A 1 HETATM 3 C C08 W5F . . . B 2 98.989 103.022 102.44 1 63.83 ? C08 W5F 701 A 1 HETATM 4 C C09 W5F . . . B 2 96.751 104.436 103.678 1 78.6 ? C09 W5F 701 A 1 HETATM 5 C C10 W5F . . . B 2 101.003 104.186 101.99 1 76.25 ? C10 W5F 701 A 1 HETATM 6 C C11 W5F . . . B 2 100.808 101.907 101.419 1 67.09 ? C11 W5F 701 A 1 HETATM 7 C C12 W5F . . . B 2 96.777 104.182 105.039 1 77.13 ? C12 W5F 701 A 1 HETATM 8 C C13 W5F . . . B 2 96.933 105.728 103.214 1 70.84 ? C13 W5F 701 A 1 HETATM 9 C C14 W5F . . . B 2 95.109 101.669 103.615 1 71.86 ? C14 W5F 701 A 1 HETATM 10 C C15 W5F . . . B 2 96.984 105.219 105.933 1 73.53 ? C15 W5F 701 A 1 HETATM 11 C C16 W5F . . . B 2 97.141 106.763 104.108 1 69.45 ? C16 W5F 701 A 1 HETATM 12 C C17 W5F . . . B 2 94.738 101.32 104.901 1 73.92 ? C17 W5F 701 A 1 HETATM 13 C C18 W5F . . . B 2 94.177 101.624 102.593 1 69.49 ? C18 W5F 701 A 1 HETATM 14 C C19 W5F . . . B 2 92.507 100.875 104.14 1 64.45 ? C19 W5F 701 A 1 HETATM 15 C C20 W5F . . . B 2 97.166 106.509 105.468 1 73.05 ? C20 W5F 701 A 1 HETATM 16 C C21 W5F . . . B 2 102.166 104.312 101.009 1 78.51 ? C21 W5F 701 A 1 HETATM 17 C C22 W5F . . . B 2 93.437 100.923 105.163 1 72.46 ? C22 W5F 701 A 1 HETATM 18 C C23 W5F . . . B 2 92.876 101.228 102.854 1 65.79 ? C23 W5F 701 A 1 HETATM 19 C C24 W5F . . . B 2 91.075 100.442 104.435 1 69.13 ? C24 W5F 701 A 1 HETATM 20 C C25 W5F . . . B 2 90.82 99.175 104.935 1 74.13 ? C25 W5F 701 A 1 HETATM 21 C C26 W5F . . . B 2 90.028 101.318 104.202 1 75.48 ? C26 W5F 701 A 1 HETATM 22 C C27 W5F . . . B 2 89.518 98.785 105.202 1 76.89 ? C27 W5F 701 A 1 HETATM 23 C C28 W5F . . . B 2 88.725 100.929 104.469 1 78.23 ? C28 W5F 701 A 1 HETATM 24 C C29 W5F . . . B 2 88.47 99.662 104.969 1 75.72 ? C29 W5F 701 A 1 HETATM 25 F F01 W5F . . . B 2 97.371 107.531 106.349 1 69.99 ? F01 W5F 701 A 1 HETATM 26 N N05 W5F . . . B 2 100.094 103.163 101.512 1 70.93 ? N05 W5F 701 A 1 HETATM 27 O O02 W5F . . . B 2 96.424 102.072 103.353 1 76.68 ? O02 W5F 701 A 1 HETATM 28 O O03 W5F . . . B 2 103.344 104.114 101.403 1 72.47 ? O03 W5F 701 A 1 HETATM 29 O O04 W5F . . . B 2 101.945 104.612 99.807 1 76.44 ? O04 W5F 701 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #