data_8WFK # _model_server_result.job_id hF2nljlR-g32HEqnrsuSGA _model_server_result.datetime_utc '2024-12-22 01:41:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8WFK # _exptl.entry_id 8WFK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 396.834 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SSR504734 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WFK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 61 A GLY 61 1_555 E NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc2 A O VAL 64 A VAL 64 1_555 E NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc3 A O LEU 414 A LEU 414 1_555 E NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 A OG1 THR 418 A THR 418 1_555 E NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? # _chem_comp.formula 'C20 H20 Cl F3 N2 O' _chem_comp.formula_weight 396.834 _chem_comp.id W5O _chem_comp.mon_nstd_flag . _chem_comp.name SSR504734 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-chloranyl-~{N}-[(~{R})-phenyl-[(2~{R})-piperidin-2-yl]methyl]-3-(trifluoromethyl)benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O16 C15 W5O doub 374 n n F25 C23 W5O sing 375 n n C22 C21 W5O doub 376 n y C22 C17 W5O sing 377 n y C15 C17 W5O sing 378 n n C15 N14 W5O sing 379 n n C03 N04 W5O sing 380 n n C03 C02 W5O sing 381 n n C21 C20 W5O sing 382 n y C17 C18 W5O doub 383 n y N04 C05 W5O sing 384 n n C20 C19 W5O doub 385 n y C18 C19 W5O sing 386 n y C18 CL27 W5O sing 387 n n C19 C23 W5O sing 388 n n F24 C23 W5O sing 389 n n C23 F26 W5O sing 390 n n C05 C07 W5O sing 391 n n C05 C06 W5O sing 392 n n C07 N14 W5O sing 393 n n C07 C08 W5O sing 394 n n C02 C01 W5O sing 395 n n C01 C06 W5O sing 396 n n C08 C09 W5O doub 397 n y C08 C13 W5O sing 398 n y C09 C10 W5O sing 399 n y C13 C12 W5O doub 400 n y C10 C11 W5O doub 401 n y C12 C11 W5O sing 402 n y C10 H1 W5O sing 403 n n C11 H2 W5O sing 404 n n C12 H3 W5O sing 405 n n C20 H4 W5O sing 406 n n C22 H5 W5O sing 407 n n C01 H6 W5O sing 408 n n C01 H7 W5O sing 409 n n C02 H8 W5O sing 410 n n C02 H9 W5O sing 411 n n C03 H10 W5O sing 412 n n C03 H11 W5O sing 413 n n C05 H12 W5O sing 414 n n C06 H13 W5O sing 415 n n C06 H14 W5O sing 416 n n C07 H15 W5O sing 417 n n C09 H16 W5O sing 418 n n C13 H17 W5O sing 419 n n C21 H18 W5O sing 420 n n N04 H19 W5O sing 421 n n N14 H21 W5O sing 422 n n # _atom_sites.entry_id 8WFK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 W5O A 1 701 701 W5O SSR . C 3 CL A 1 702 1 CL CL . D 4 NA A 1 703 1 NA NA . E 4 NA A 1 704 2 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 W5O . . . B 2 105.253 109.461 107.314 1 71.99 ? C10 W5O 701 A 1 HETATM 2 C C11 W5O . . . B 2 104.817 108.678 108.37 1 66.44 ? C11 W5O 701 A 1 HETATM 3 C C12 W5O . . . B 2 103.601 108.023 108.284 1 73.55 ? C12 W5O 701 A 1 HETATM 4 O O16 W5O . . . B 2 101.62 107.231 102.877 1 75.15 ? O16 W5O 701 A 1 HETATM 5 C C17 W5O . . . B 2 99.729 106.334 103.962 1 72.39 ? C17 W5O 701 A 1 HETATM 6 C C19 W5O . . . B 2 98.788 104.16 104.317 1 66.94 ? C19 W5O 701 A 1 HETATM 7 C C20 W5O . . . B 2 97.517 104.684 104.165 1 67.08 ? C20 W5O 701 A 1 HETATM 8 C C22 W5O . . . B 2 98.457 106.86 103.81 1 75.55 ? C22 W5O 701 A 1 HETATM 9 C C23 W5O . . . B 2 98.967 102.672 104.595 1 68.9 ? C23 W5O 701 A 1 HETATM 10 C C01 W5O . . . B 2 100.681 112.382 105.724 1 70.55 ? C01 W5O 701 A 1 HETATM 11 C C02 W5O . . . B 2 101.647 113.322 105.102 1 72.78 ? C02 W5O 701 A 1 HETATM 12 C C03 W5O . . . B 2 102.358 112.747 103.875 1 71.9 ? C03 W5O 701 A 1 HETATM 13 C C05 W5O . . . B 2 101.854 110.491 104.641 1 70.05 ? C05 W5O 701 A 1 HETATM 14 C C06 W5O . . . B 2 101.257 111.031 105.939 1 68.81 ? C06 W5O 701 A 1 HETATM 15 C C07 W5O . . . B 2 102.389 109.066 104.833 1 74.46 ? C07 W5O 701 A 1 HETATM 16 C C08 W5O . . . B 2 103.254 108.938 106.09 1 76.64 ? C08 W5O 701 A 1 HETATM 17 C C09 W5O . . . B 2 104.476 109.587 106.174 1 73.78 ? C09 W5O 701 A 1 HETATM 18 C C13 W5O . . . B 2 102.823 108.151 107.145 1 76.28 ? C13 W5O 701 A 1 HETATM 19 C C15 W5O . . . B 2 100.941 107.256 103.845 1 73.75 ? C15 W5O 701 A 1 HETATM 20 C C18 W5O . . . B 2 99.896 104.982 104.213 1 75.07 ? C18 W5O 701 A 1 HETATM 21 C C21 W5O . . . B 2 97.35 106.035 103.912 1 76.9 ? C21 W5O 701 A 1 HETATM 22 F F24 W5O . . . B 2 97.784 102.03 104.372 1 76.52 ? F24 W5O 701 A 1 HETATM 23 F F25 W5O . . . B 2 99.924 102.167 103.765 1 76.47 ? F25 W5O 701 A 1 HETATM 24 F F26 W5O . . . B 2 99.351 102.496 105.891 1 68.91 ? F26 W5O 701 A 1 HETATM 25 N N04 W5O . . . B 2 102.906 111.391 104.117 1 72.31 ? N04 W5O 701 A 1 HETATM 26 N N14 W5O . . . B 2 101.247 108.173 104.928 1 76.06 ? N14 W5O 701 A 1 HETATM 27 CL CL27 W5O . . . B 2 101.533 104.3 104.409 1 96.97 ? CL27 W5O 701 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #