data_8WFQ
#
_model_server_result.job_id            sZvl0tazlXdkWm0dVQzNIw 
_model_server_result.datetime_utc      '2024-11-15 15:34:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wfq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":601}' 
#
_entry.id    8WFQ 
#
_exptl.entry_id    8WFQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.428 
_cell.angle_gamma         90 
_cell.entry_id            8WFQ 
_cell.length_a            101.343 
_cell.length_b            149.56 
_cell.length_c            125.076 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WFQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,R,S,T,U 1 1 
E,F,G,H,N,O,P,Q,V,W,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 246 n n 
PA O2A NAI sing 247 n n 
PA O5B NAI sing 248 n n 
PA O3 NAI sing 249 n n 
O2A HOA2 NAI sing 250 n n 
O5B C5B NAI sing 251 n n 
C5B C4B NAI sing 252 n n 
C5B H51A NAI sing 253 n n 
C5B H52A NAI sing 254 n n 
C4B O4B NAI sing 255 n n 
C4B C3B NAI sing 256 n n 
C4B H4B NAI sing 257 n n 
O4B C1B NAI sing 258 n n 
C3B O3B NAI sing 259 n n 
C3B C2B NAI sing 260 n n 
C3B H3B NAI sing 261 n n 
O3B HO3A NAI sing 262 n n 
C2B O2B NAI sing 263 n n 
C2B C1B NAI sing 264 n n 
C2B H2B NAI sing 265 n n 
O2B HO2A NAI sing 266 n n 
C1B N9A NAI sing 267 n n 
C1B H1B NAI sing 268 n n 
N9A C8A NAI sing 269 n y 
N9A C4A NAI sing 270 n y 
C8A N7A NAI doub 271 n y 
C8A H8A NAI sing 272 n n 
N7A C5A NAI sing 273 n y 
C5A C6A NAI sing 274 n y 
C5A C4A NAI doub 275 n y 
C6A N6A NAI sing 276 n n 
C6A N1A NAI doub 277 n y 
N6A H61A NAI sing 278 n n 
N6A H62A NAI sing 279 n n 
N1A C2A NAI sing 280 n y 
C2A N3A NAI doub 281 n y 
C2A H2A NAI sing 282 n n 
N3A C4A NAI sing 283 n y 
O3 PN NAI sing 284 n n 
PN O1N NAI sing 285 n n 
PN O2N NAI doub 286 n n 
PN O5D NAI sing 287 n n 
O1N HO1N NAI sing 288 n n 
O5D C5D NAI sing 289 n n 
C5D C4D NAI sing 290 n n 
C5D H51N NAI sing 291 n n 
C5D H52N NAI sing 292 n n 
C4D O4D NAI sing 293 n n 
C4D C3D NAI sing 294 n n 
C4D H4D NAI sing 295 n n 
O4D C1D NAI sing 296 n n 
C3D O3D NAI sing 297 n n 
C3D C2D NAI sing 298 n n 
C3D H3D NAI sing 299 n n 
O3D HO3N NAI sing 300 n n 
C2D O2D NAI sing 301 n n 
C2D C1D NAI sing 302 n n 
C2D H2D NAI sing 303 n n 
O2D HO2N NAI sing 304 n n 
C1D N1N NAI sing 305 n n 
C1D H1D NAI sing 306 n n 
N1N C2N NAI sing 307 n n 
N1N C6N NAI sing 308 n n 
C2N C3N NAI doub 309 n n 
C2N H2N NAI sing 310 n n 
C3N C7N NAI sing 311 n n 
C3N C4N NAI sing 312 n n 
C7N O7N NAI doub 313 n n 
C7N N7N NAI sing 314 n n 
N7N H71N NAI sing 315 n n 
N7N H72N NAI sing 316 n n 
C4N C5N NAI sing 317 n n 
C4N H4N NAI sing 318 n n 
C4N H42N NAI sing 319 n n 
C5N C6N NAI doub 320 n n 
C5N H5N NAI sing 321 n n 
C6N H6N NAI sing 322 n n 
#
_atom_sites.entry_id                     8WFQ 
_atom_sites.fract_transf_matrix[1][1]    0.009867 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000938 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006686 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008031 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NAI A 1 601 502 NAI NAI . 
J 3 EDO A 1 602 503 EDO EDO . 
K 2 NAI B 1 601 502 NAI NAI . 
L 2 NAI C 1 601 502 NAI NAI . 
M 2 NAI D 1 601 502 NAI NAI . 
N 2 NAI E 1 601 502 NAI NAI . 
O 2 NAI F 1 601 502 NAI NAI . 
P 2 NAI G 1 601 502 NAI NAI . 
Q 2 NAI H 1 601 502 NAI NAI . 
R 4 HOH A 1 701 510 HOH HOH . 
R 4 HOH A 2 702 511 HOH HOH . 
R 4 HOH A 3 703 506 HOH HOH . 
R 4 HOH A 4 704 512 HOH HOH . 
R 4 HOH A 5 705 509 HOH HOH . 
R 4 HOH A 6 706 507 HOH HOH . 
R 4 HOH A 7 707 505 HOH HOH . 
R 4 HOH A 8 708 504 HOH HOH . 
R 4 HOH A 9 709 513 HOH HOH . 
R 4 HOH A 10 710 514 HOH HOH . 
R 4 HOH A 11 711 508 HOH HOH . 
S 4 HOH B 1 701 504 HOH HOH . 
S 4 HOH B 2 702 510 HOH HOH . 
S 4 HOH B 3 703 511 HOH HOH . 
S 4 HOH B 4 704 503 HOH HOH . 
S 4 HOH B 5 705 509 HOH HOH . 
S 4 HOH B 6 706 506 HOH HOH . 
S 4 HOH B 7 707 508 HOH HOH . 
S 4 HOH B 8 708 505 HOH HOH . 
S 4 HOH B 9 709 507 HOH HOH . 
T 4 HOH C 1 701 511 HOH HOH . 
T 4 HOH C 2 702 505 HOH HOH . 
T 4 HOH C 3 703 512 HOH HOH . 
T 4 HOH C 4 704 507 HOH HOH . 
T 4 HOH C 5 705 504 HOH HOH . 
T 4 HOH C 6 706 510 HOH HOH . 
T 4 HOH C 7 707 513 HOH HOH . 
T 4 HOH C 8 708 509 HOH HOH . 
T 4 HOH C 9 709 506 HOH HOH . 
T 4 HOH C 10 710 508 HOH HOH . 
T 4 HOH C 11 711 503 HOH HOH . 
U 4 HOH D 1 701 508 HOH HOH . 
U 4 HOH D 2 702 503 HOH HOH . 
U 4 HOH D 3 703 506 HOH HOH . 
U 4 HOH D 4 704 511 HOH HOH . 
U 4 HOH D 5 705 505 HOH HOH . 
U 4 HOH D 6 706 514 HOH HOH . 
U 4 HOH D 7 707 513 HOH HOH . 
U 4 HOH D 8 708 515 HOH HOH . 
U 4 HOH D 9 709 507 HOH HOH . 
U 4 HOH D 10 710 512 HOH HOH . 
U 4 HOH D 11 711 504 HOH HOH . 
U 4 HOH D 12 712 510 HOH HOH . 
U 4 HOH D 13 713 509 HOH HOH . 
V 4 HOH E 1 701 512 HOH HOH . 
V 4 HOH E 2 702 504 HOH HOH . 
V 4 HOH E 3 703 509 HOH HOH . 
V 4 HOH E 4 704 503 HOH HOH . 
V 4 HOH E 5 705 516 HOH HOH . 
V 4 HOH E 6 706 507 HOH HOH . 
V 4 HOH E 7 707 514 HOH HOH . 
V 4 HOH E 8 708 510 HOH HOH . 
V 4 HOH E 9 709 505 HOH HOH . 
V 4 HOH E 10 710 515 HOH HOH . 
V 4 HOH E 11 711 506 HOH HOH . 
V 4 HOH E 12 712 508 HOH HOH . 
V 4 HOH E 13 713 513 HOH HOH . 
V 4 HOH E 14 714 511 HOH HOH . 
W 4 HOH F 1 701 508 HOH HOH . 
W 4 HOH F 2 702 507 HOH HOH . 
W 4 HOH F 3 703 506 HOH HOH . 
W 4 HOH F 4 704 505 HOH HOH . 
W 4 HOH F 5 705 504 HOH HOH . 
X 4 HOH G 1 701 503 HOH HOH . 
X 4 HOH G 2 702 504 HOH HOH . 
Y 4 HOH H 1 701 504 HOH HOH . 
Y 4 HOH H 2 702 503 HOH HOH . 
Y 4 HOH H 3 703 503 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . M 2 90.047 -40.431 -15.726 1 68.75 0 PA NAI 601 D 1 
HETATM 2 O O1A NAI . . . M 2 90.699 -39.375 -14.899 1 69.14 0 O1A NAI 601 D 1 
HETATM 3 O O2A NAI . . . M 2 89.139 -39.948 -16.803 1 69.68 0 O2A NAI 601 D 1 
HETATM 4 O O5B NAI . . . M 2 89.241 -41.45 -14.781 1 62.23 0 O5B NAI 601 D 1 
HETATM 5 C C5B NAI . . . M 2 87.975 -41.975 -15.253 1 59.69 0 C5B NAI 601 D 1 
HETATM 6 C C4B NAI . . . M 2 87.775 -43.385 -14.754 1 59.51 0 C4B NAI 601 D 1 
HETATM 7 O O4B NAI . . . M 2 86.886 -44.068 -15.674 1 58.31 0 O4B NAI 601 D 1 
HETATM 8 C C3B NAI . . . M 2 89.032 -44.266 -14.649 1 59.45 0 C3B NAI 601 D 1 
HETATM 9 O O3B NAI . . . M 2 89.39 -44.485 -13.29 1 62.59 0 O3B NAI 601 D 1 
HETATM 10 C C2B NAI . . . M 2 88.626 -45.577 -15.337 1 57.98 0 C2B NAI 601 D 1 
HETATM 11 O O2B NAI . . . M 2 88.041 -46.522 -14.468 1 56.07 0 O2B NAI 601 D 1 
HETATM 12 C C1B NAI . . . M 2 87.584 -45.095 -16.337 1 57.11 0 C1B NAI 601 D 1 
HETATM 13 N N9A NAI . . . M 2 88.13 -44.574 -17.587 1 56.35 0 N9A NAI 601 D 1 
HETATM 14 C C8A NAI . . . M 2 89.364 -44.005 -17.795 1 55.37 0 C8A NAI 601 D 1 
HETATM 15 N N7A NAI . . . M 2 89.57 -43.643 -19.036 1 54.83 0 N7A NAI 601 D 1 
HETATM 16 C C5A NAI . . . M 2 88.4 -43.992 -19.693 1 54.37 0 C5A NAI 601 D 1 
HETATM 17 C C6A NAI . . . M 2 87.999 -43.866 -21.036 1 53.3 0 C6A NAI 601 D 1 
HETATM 18 N N6A NAI . . . M 2 88.765 -43.332 -21.982 1 53.88 0 N6A NAI 601 D 1 
HETATM 19 N N1A NAI . . . M 2 86.765 -44.317 -21.368 1 51.79 0 N1A NAI 601 D 1 
HETATM 20 C C2A NAI . . . M 2 86.005 -44.855 -20.406 1 52.08 0 C2A NAI 601 D 1 
HETATM 21 N N3A NAI . . . M 2 86.276 -45.026 -19.114 1 53.25 0 N3A NAI 601 D 1 
HETATM 22 C C4A NAI . . . M 2 87.504 -44.568 -18.813 1 55.16 0 C4A NAI 601 D 1 
HETATM 23 O O3 NAI . . . M 2 91.185 -41.388 -16.352 1 77.3 0 O3 NAI 601 D 1 
HETATM 24 P PN NAI . . . M 2 92.779 -41.617 -16.224 1 83.72 0 PN NAI 601 D 1 
HETATM 25 O O1N NAI . . . M 2 93.383 -41.504 -17.585 1 82.68 0 O1N NAI 601 D 1 
HETATM 26 O O2N NAI . . . M 2 93.016 -42.884 -15.467 1 82.5 0 O2N NAI 601 D 1 
HETATM 27 O O5D NAI . . . M 2 93.254 -40.363 -15.336 1 83.19 0 O5D NAI 601 D 1 
HETATM 28 C C5D NAI . . . M 2 94.033 -40.57 -14.127 1 83.04 0 C5D NAI 601 D 1 
HETATM 29 C C4D NAI . . . M 2 93.12 -40.546 -12.924 1 85.23 0 C4D NAI 601 D 1 
HETATM 30 O O4D NAI . . . M 2 92.737 -39.179 -12.643 1 85.39 0 O4D NAI 601 D 1 
HETATM 31 C C3D NAI . . . M 2 91.792 -41.314 -13.049 1 86.09 0 C3D NAI 601 D 1 
HETATM 32 O O3D NAI . . . M 2 91.904 -42.63 -12.522 1 87.5 0 O3D NAI 601 D 1 
HETATM 33 C C2D NAI . . . M 2 90.774 -40.395 -12.339 1 85.51 0 C2D NAI 601 D 1 
HETATM 34 O O2D NAI . . . M 2 90.058 -41.025 -11.283 1 85.58 0 O2D NAI 601 D 1 
HETATM 35 C C1D NAI . . . M 2 91.592 -39.204 -11.828 1 83.43 0 C1D NAI 601 D 1 
HETATM 36 N N1N NAI . . . M 2 90.869 -37.899 -11.938 1 76.77 0 N1N NAI 601 D 1 
HETATM 37 C C2N NAI . . . M 2 89.522 -37.833 -11.71 1 73.75 0 C2N NAI 601 D 1 
HETATM 38 C C3N NAI . . . M 2 88.978 -36.756 -11.085 1 70.5 0 C3N NAI 601 D 1 
HETATM 39 C C7N NAI . . . M 2 87.74 -36.977 -10.295 1 67.61 0 C7N NAI 601 D 1 
HETATM 40 O O7N NAI . . . M 2 87.536 -38.074 -9.763 1 64.85 0 O7N NAI 601 D 1 
HETATM 41 N N7N NAI . . . M 2 86.881 -35.976 -10.185 1 65.87 0 N7N NAI 601 D 1 
HETATM 42 C C4N NAI . . . M 2 89.687 -35.453 -11.255 1 70.37 0 C4N NAI 601 D 1 
HETATM 43 C C5N NAI . . . M 2 91.052 -35.563 -11.828 1 70.15 0 C5N NAI 601 D 1 
HETATM 44 C C6N NAI . . . M 2 91.535 -36.723 -12.226 1 72.08 0 C6N NAI 601 D 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#