data_8WFQ # _model_server_result.job_id o2NcBjm-wjXperMy_oiDPQ _model_server_result.datetime_utc '2024-11-15 15:58:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":601}' # _entry.id 8WFQ # _exptl.entry_id 8WFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.428 _cell.angle_gamma 90 _cell.entry_id 8WFQ _cell.length_a 101.343 _cell.length_b 149.56 _cell.length_c 125.076 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,R,S,T,U 1 1 E,F,G,H,N,O,P,Q,V,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 246 n n PA O2A NAI sing 247 n n PA O5B NAI sing 248 n n PA O3 NAI sing 249 n n O2A HOA2 NAI sing 250 n n O5B C5B NAI sing 251 n n C5B C4B NAI sing 252 n n C5B H51A NAI sing 253 n n C5B H52A NAI sing 254 n n C4B O4B NAI sing 255 n n C4B C3B NAI sing 256 n n C4B H4B NAI sing 257 n n O4B C1B NAI sing 258 n n C3B O3B NAI sing 259 n n C3B C2B NAI sing 260 n n C3B H3B NAI sing 261 n n O3B HO3A NAI sing 262 n n C2B O2B NAI sing 263 n n C2B C1B NAI sing 264 n n C2B H2B NAI sing 265 n n O2B HO2A NAI sing 266 n n C1B N9A NAI sing 267 n n C1B H1B NAI sing 268 n n N9A C8A NAI sing 269 n y N9A C4A NAI sing 270 n y C8A N7A NAI doub 271 n y C8A H8A NAI sing 272 n n N7A C5A NAI sing 273 n y C5A C6A NAI sing 274 n y C5A C4A NAI doub 275 n y C6A N6A NAI sing 276 n n C6A N1A NAI doub 277 n y N6A H61A NAI sing 278 n n N6A H62A NAI sing 279 n n N1A C2A NAI sing 280 n y C2A N3A NAI doub 281 n y C2A H2A NAI sing 282 n n N3A C4A NAI sing 283 n y O3 PN NAI sing 284 n n PN O1N NAI sing 285 n n PN O2N NAI doub 286 n n PN O5D NAI sing 287 n n O1N HO1N NAI sing 288 n n O5D C5D NAI sing 289 n n C5D C4D NAI sing 290 n n C5D H51N NAI sing 291 n n C5D H52N NAI sing 292 n n C4D O4D NAI sing 293 n n C4D C3D NAI sing 294 n n C4D H4D NAI sing 295 n n O4D C1D NAI sing 296 n n C3D O3D NAI sing 297 n n C3D C2D NAI sing 298 n n C3D H3D NAI sing 299 n n O3D HO3N NAI sing 300 n n C2D O2D NAI sing 301 n n C2D C1D NAI sing 302 n n C2D H2D NAI sing 303 n n O2D HO2N NAI sing 304 n n C1D N1N NAI sing 305 n n C1D H1D NAI sing 306 n n N1N C2N NAI sing 307 n n N1N C6N NAI sing 308 n n C2N C3N NAI doub 309 n n C2N H2N NAI sing 310 n n C3N C7N NAI sing 311 n n C3N C4N NAI sing 312 n n C7N O7N NAI doub 313 n n C7N N7N NAI sing 314 n n N7N H71N NAI sing 315 n n N7N H72N NAI sing 316 n n C4N C5N NAI sing 317 n n C4N H4N NAI sing 318 n n C4N H42N NAI sing 319 n n C5N C6N NAI doub 320 n n C5N H5N NAI sing 321 n n C6N H6N NAI sing 322 n n # _atom_sites.entry_id 8WFQ _atom_sites.fract_transf_matrix[1][1] 0.009867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000938 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAI A 1 601 502 NAI NAI . J 3 EDO A 1 602 503 EDO EDO . K 2 NAI B 1 601 502 NAI NAI . L 2 NAI C 1 601 502 NAI NAI . M 2 NAI D 1 601 502 NAI NAI . N 2 NAI E 1 601 502 NAI NAI . O 2 NAI F 1 601 502 NAI NAI . P 2 NAI G 1 601 502 NAI NAI . Q 2 NAI H 1 601 502 NAI NAI . R 4 HOH A 1 701 510 HOH HOH . R 4 HOH A 2 702 511 HOH HOH . R 4 HOH A 3 703 506 HOH HOH . R 4 HOH A 4 704 512 HOH HOH . R 4 HOH A 5 705 509 HOH HOH . R 4 HOH A 6 706 507 HOH HOH . R 4 HOH A 7 707 505 HOH HOH . R 4 HOH A 8 708 504 HOH HOH . R 4 HOH A 9 709 513 HOH HOH . R 4 HOH A 10 710 514 HOH HOH . R 4 HOH A 11 711 508 HOH HOH . S 4 HOH B 1 701 504 HOH HOH . S 4 HOH B 2 702 510 HOH HOH . S 4 HOH B 3 703 511 HOH HOH . S 4 HOH B 4 704 503 HOH HOH . S 4 HOH B 5 705 509 HOH HOH . S 4 HOH B 6 706 506 HOH HOH . S 4 HOH B 7 707 508 HOH HOH . S 4 HOH B 8 708 505 HOH HOH . S 4 HOH B 9 709 507 HOH HOH . T 4 HOH C 1 701 511 HOH HOH . T 4 HOH C 2 702 505 HOH HOH . T 4 HOH C 3 703 512 HOH HOH . T 4 HOH C 4 704 507 HOH HOH . T 4 HOH C 5 705 504 HOH HOH . T 4 HOH C 6 706 510 HOH HOH . T 4 HOH C 7 707 513 HOH HOH . T 4 HOH C 8 708 509 HOH HOH . T 4 HOH C 9 709 506 HOH HOH . T 4 HOH C 10 710 508 HOH HOH . T 4 HOH C 11 711 503 HOH HOH . U 4 HOH D 1 701 508 HOH HOH . U 4 HOH D 2 702 503 HOH HOH . U 4 HOH D 3 703 506 HOH HOH . U 4 HOH D 4 704 511 HOH HOH . U 4 HOH D 5 705 505 HOH HOH . U 4 HOH D 6 706 514 HOH HOH . U 4 HOH D 7 707 513 HOH HOH . U 4 HOH D 8 708 515 HOH HOH . U 4 HOH D 9 709 507 HOH HOH . U 4 HOH D 10 710 512 HOH HOH . U 4 HOH D 11 711 504 HOH HOH . U 4 HOH D 12 712 510 HOH HOH . U 4 HOH D 13 713 509 HOH HOH . V 4 HOH E 1 701 512 HOH HOH . V 4 HOH E 2 702 504 HOH HOH . V 4 HOH E 3 703 509 HOH HOH . V 4 HOH E 4 704 503 HOH HOH . V 4 HOH E 5 705 516 HOH HOH . V 4 HOH E 6 706 507 HOH HOH . V 4 HOH E 7 707 514 HOH HOH . V 4 HOH E 8 708 510 HOH HOH . V 4 HOH E 9 709 505 HOH HOH . V 4 HOH E 10 710 515 HOH HOH . V 4 HOH E 11 711 506 HOH HOH . V 4 HOH E 12 712 508 HOH HOH . V 4 HOH E 13 713 513 HOH HOH . V 4 HOH E 14 714 511 HOH HOH . W 4 HOH F 1 701 508 HOH HOH . W 4 HOH F 2 702 507 HOH HOH . W 4 HOH F 3 703 506 HOH HOH . W 4 HOH F 4 704 505 HOH HOH . W 4 HOH F 5 705 504 HOH HOH . X 4 HOH G 1 701 503 HOH HOH . X 4 HOH G 2 702 504 HOH HOH . Y 4 HOH H 1 701 504 HOH HOH . Y 4 HOH H 2 702 503 HOH HOH . Y 4 HOH H 3 703 503 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . P 2 18.563 -48.376 31.823 1 90.98 0 PA NAI 601 G 1 HETATM 2 O O1A NAI . . . P 2 19.41 -48.839 32.961 1 87.7 0 O1A NAI 601 G 1 HETATM 3 O O2A NAI . . . P 2 18.337 -46.906 31.69 1 93.01 0 O2A NAI 601 G 1 HETATM 4 O O5B NAI . . . P 2 17.147 -49.137 31.864 1 88.03 0 O5B NAI 601 G 1 HETATM 5 C C5B NAI . . . P 2 15.944 -48.426 32.268 1 86.04 0 C5B NAI 601 G 1 HETATM 6 C C4B NAI . . . P 2 15.181 -47.947 31.054 1 83.77 0 C4B NAI 601 G 1 HETATM 7 O O4B NAI . . . P 2 15.503 -46.556 30.793 1 80.68 0 O4B NAI 601 G 1 HETATM 8 C C3B NAI . . . P 2 15.465 -48.655 29.725 1 82.85 0 C3B NAI 601 G 1 HETATM 9 O O3B NAI . . . P 2 14.715 -49.858 29.614 1 85.5 0 O3B NAI 601 G 1 HETATM 10 C C2B NAI . . . P 2 15.03 -47.585 28.719 1 80 0 C2B NAI 601 G 1 HETATM 11 O O2B NAI . . . P 2 13.632 -47.56 28.527 1 79.39 0 O2B NAI 601 G 1 HETATM 12 C C1B NAI . . . P 2 15.493 -46.299 29.404 1 77.52 0 C1B NAI 601 G 1 HETATM 13 N N9A NAI . . . P 2 16.825 -45.846 29.01 1 72.67 0 N9A NAI 601 G 1 HETATM 14 C C8A NAI . . . P 2 17.919 -46.631 28.743 1 70.74 0 C8A NAI 601 G 1 HETATM 15 N N7A NAI . . . P 2 18.988 -45.947 28.421 1 69.39 0 N7A NAI 601 G 1 HETATM 16 C C5A NAI . . . P 2 18.578 -44.623 28.478 1 68.9 0 C5A NAI 601 G 1 HETATM 17 C C6A NAI . . . P 2 19.258 -43.412 28.242 1 67.95 0 C6A NAI 601 G 1 HETATM 18 N N6A NAI . . . P 2 20.539 -43.345 27.889 1 66.92 0 N6A NAI 601 G 1 HETATM 19 N N1A NAI . . . P 2 18.556 -42.261 28.385 1 67.35 0 N1A NAI 601 G 1 HETATM 20 C C2A NAI . . . P 2 17.267 -42.341 28.742 1 67.33 0 C2A NAI 601 G 1 HETATM 21 N N3A NAI . . . P 2 16.528 -43.419 28.994 1 68.4 0 N3A NAI 601 G 1 HETATM 22 C C4A NAI . . . P 2 17.246 -44.546 28.843 1 70.11 0 C4A NAI 601 G 1 HETATM 23 O O3 NAI . . . P 2 19.164 -48.939 30.442 1 92.94 0 O3 NAI 601 G 1 HETATM 24 P PN NAI . . . P 2 20.603 -49.292 29.817 1 91.21 0 PN NAI 601 G 1 HETATM 25 O O1N NAI . . . P 2 21.452 -48.064 29.794 1 89.39 0 O1N NAI 601 G 1 HETATM 26 O O2N NAI . . . P 2 20.384 -50.007 28.523 1 88.45 0 O2N NAI 601 G 1 HETATM 27 O O5D NAI . . . P 2 21.174 -50.317 30.915 1 92.04 0 O5D NAI 601 G 1 HETATM 28 C C5D NAI . . . P 2 21.482 -51.687 30.545 1 91.9 0 C5D NAI 601 G 1 HETATM 29 C C4D NAI . . . P 2 20.425 -52.614 31.095 1 93.56 0 C4D NAI 601 G 1 HETATM 30 O O4D NAI . . . P 2 20.652 -52.793 32.517 1 94.82 0 O4D NAI 601 G 1 HETATM 31 C C3D NAI . . . P 2 18.967 -52.147 30.948 1 93.53 0 C3D NAI 601 G 1 HETATM 32 O O3D NAI . . . P 2 18.14 -53.197 30.464 1 96.55 0 O3D NAI 601 G 1 HETATM 33 C C2D NAI . . . P 2 18.621 -51.707 32.372 1 91.72 0 C2D NAI 601 G 1 HETATM 34 O O2D NAI . . . P 2 17.227 -51.756 32.649 1 84.76 0 O2D NAI 601 G 1 HETATM 35 C C1D NAI . . . P 2 19.439 -52.674 33.222 1 94.12 0 C1D NAI 601 G 1 HETATM 36 N N1N NAI . . . P 2 19.722 -52.166 34.602 1 96.57 0 N1N NAI 601 G 1 HETATM 37 C C2N NAI . . . P 2 18.779 -51.462 35.3 1 98.83 0 C2N NAI 601 G 1 HETATM 38 C C3N NAI . . . P 2 18.65 -51.623 36.651 1 96.66 0 C3N NAI 601 G 1 HETATM 39 C C7N NAI . . . P 2 17.306 -51.399 37.245 1 94.68 0 C7N NAI 601 G 1 HETATM 40 O O7N NAI . . . P 2 16.291 -51.674 36.595 1 91.58 0 O7N NAI 601 G 1 HETATM 41 N N7N NAI . . . P 2 17.241 -50.902 38.472 1 91.9 0 N7N NAI 601 G 1 HETATM 42 C C4N NAI . . . P 2 19.879 -52.014 37.409 1 94.98 0 C4N NAI 601 G 1 HETATM 43 C C5N NAI . . . P 2 20.997 -52.48 36.549 1 93.62 0 C5N NAI 601 G 1 HETATM 44 C C6N NAI . . . P 2 20.926 -52.414 35.233 1 94.59 0 C6N NAI 601 G 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #