data_8WFQ # _model_server_result.job_id wERffQyWaZe9mcUmRvuBfw _model_server_result.datetime_utc '2024-11-15 15:57:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":601}' # _entry.id 8WFQ # _exptl.entry_id 8WFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.428 _cell.angle_gamma 90 _cell.entry_id 8WFQ _cell.length_a 101.343 _cell.length_b 149.56 _cell.length_c 125.076 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,R,S,T,U 1 1 E,F,G,H,N,O,P,Q,V,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 246 n n PA O2A NAI sing 247 n n PA O5B NAI sing 248 n n PA O3 NAI sing 249 n n O2A HOA2 NAI sing 250 n n O5B C5B NAI sing 251 n n C5B C4B NAI sing 252 n n C5B H51A NAI sing 253 n n C5B H52A NAI sing 254 n n C4B O4B NAI sing 255 n n C4B C3B NAI sing 256 n n C4B H4B NAI sing 257 n n O4B C1B NAI sing 258 n n C3B O3B NAI sing 259 n n C3B C2B NAI sing 260 n n C3B H3B NAI sing 261 n n O3B HO3A NAI sing 262 n n C2B O2B NAI sing 263 n n C2B C1B NAI sing 264 n n C2B H2B NAI sing 265 n n O2B HO2A NAI sing 266 n n C1B N9A NAI sing 267 n n C1B H1B NAI sing 268 n n N9A C8A NAI sing 269 n y N9A C4A NAI sing 270 n y C8A N7A NAI doub 271 n y C8A H8A NAI sing 272 n n N7A C5A NAI sing 273 n y C5A C6A NAI sing 274 n y C5A C4A NAI doub 275 n y C6A N6A NAI sing 276 n n C6A N1A NAI doub 277 n y N6A H61A NAI sing 278 n n N6A H62A NAI sing 279 n n N1A C2A NAI sing 280 n y C2A N3A NAI doub 281 n y C2A H2A NAI sing 282 n n N3A C4A NAI sing 283 n y O3 PN NAI sing 284 n n PN O1N NAI sing 285 n n PN O2N NAI doub 286 n n PN O5D NAI sing 287 n n O1N HO1N NAI sing 288 n n O5D C5D NAI sing 289 n n C5D C4D NAI sing 290 n n C5D H51N NAI sing 291 n n C5D H52N NAI sing 292 n n C4D O4D NAI sing 293 n n C4D C3D NAI sing 294 n n C4D H4D NAI sing 295 n n O4D C1D NAI sing 296 n n C3D O3D NAI sing 297 n n C3D C2D NAI sing 298 n n C3D H3D NAI sing 299 n n O3D HO3N NAI sing 300 n n C2D O2D NAI sing 301 n n C2D C1D NAI sing 302 n n C2D H2D NAI sing 303 n n O2D HO2N NAI sing 304 n n C1D N1N NAI sing 305 n n C1D H1D NAI sing 306 n n N1N C2N NAI sing 307 n n N1N C6N NAI sing 308 n n C2N C3N NAI doub 309 n n C2N H2N NAI sing 310 n n C3N C7N NAI sing 311 n n C3N C4N NAI sing 312 n n C7N O7N NAI doub 313 n n C7N N7N NAI sing 314 n n N7N H71N NAI sing 315 n n N7N H72N NAI sing 316 n n C4N C5N NAI sing 317 n n C4N H4N NAI sing 318 n n C4N H42N NAI sing 319 n n C5N C6N NAI doub 320 n n C5N H5N NAI sing 321 n n C6N H6N NAI sing 322 n n # _atom_sites.entry_id 8WFQ _atom_sites.fract_transf_matrix[1][1] 0.009867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000938 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAI A 1 601 502 NAI NAI . J 3 EDO A 1 602 503 EDO EDO . K 2 NAI B 1 601 502 NAI NAI . L 2 NAI C 1 601 502 NAI NAI . M 2 NAI D 1 601 502 NAI NAI . N 2 NAI E 1 601 502 NAI NAI . O 2 NAI F 1 601 502 NAI NAI . P 2 NAI G 1 601 502 NAI NAI . Q 2 NAI H 1 601 502 NAI NAI . R 4 HOH A 1 701 510 HOH HOH . R 4 HOH A 2 702 511 HOH HOH . R 4 HOH A 3 703 506 HOH HOH . R 4 HOH A 4 704 512 HOH HOH . R 4 HOH A 5 705 509 HOH HOH . R 4 HOH A 6 706 507 HOH HOH . R 4 HOH A 7 707 505 HOH HOH . R 4 HOH A 8 708 504 HOH HOH . R 4 HOH A 9 709 513 HOH HOH . R 4 HOH A 10 710 514 HOH HOH . R 4 HOH A 11 711 508 HOH HOH . S 4 HOH B 1 701 504 HOH HOH . S 4 HOH B 2 702 510 HOH HOH . S 4 HOH B 3 703 511 HOH HOH . S 4 HOH B 4 704 503 HOH HOH . S 4 HOH B 5 705 509 HOH HOH . S 4 HOH B 6 706 506 HOH HOH . S 4 HOH B 7 707 508 HOH HOH . S 4 HOH B 8 708 505 HOH HOH . S 4 HOH B 9 709 507 HOH HOH . T 4 HOH C 1 701 511 HOH HOH . T 4 HOH C 2 702 505 HOH HOH . T 4 HOH C 3 703 512 HOH HOH . T 4 HOH C 4 704 507 HOH HOH . T 4 HOH C 5 705 504 HOH HOH . T 4 HOH C 6 706 510 HOH HOH . T 4 HOH C 7 707 513 HOH HOH . T 4 HOH C 8 708 509 HOH HOH . T 4 HOH C 9 709 506 HOH HOH . T 4 HOH C 10 710 508 HOH HOH . T 4 HOH C 11 711 503 HOH HOH . U 4 HOH D 1 701 508 HOH HOH . U 4 HOH D 2 702 503 HOH HOH . U 4 HOH D 3 703 506 HOH HOH . U 4 HOH D 4 704 511 HOH HOH . U 4 HOH D 5 705 505 HOH HOH . U 4 HOH D 6 706 514 HOH HOH . U 4 HOH D 7 707 513 HOH HOH . U 4 HOH D 8 708 515 HOH HOH . U 4 HOH D 9 709 507 HOH HOH . U 4 HOH D 10 710 512 HOH HOH . U 4 HOH D 11 711 504 HOH HOH . U 4 HOH D 12 712 510 HOH HOH . U 4 HOH D 13 713 509 HOH HOH . V 4 HOH E 1 701 512 HOH HOH . V 4 HOH E 2 702 504 HOH HOH . V 4 HOH E 3 703 509 HOH HOH . V 4 HOH E 4 704 503 HOH HOH . V 4 HOH E 5 705 516 HOH HOH . V 4 HOH E 6 706 507 HOH HOH . V 4 HOH E 7 707 514 HOH HOH . V 4 HOH E 8 708 510 HOH HOH . V 4 HOH E 9 709 505 HOH HOH . V 4 HOH E 10 710 515 HOH HOH . V 4 HOH E 11 711 506 HOH HOH . V 4 HOH E 12 712 508 HOH HOH . V 4 HOH E 13 713 513 HOH HOH . V 4 HOH E 14 714 511 HOH HOH . W 4 HOH F 1 701 508 HOH HOH . W 4 HOH F 2 702 507 HOH HOH . W 4 HOH F 3 703 506 HOH HOH . W 4 HOH F 4 704 505 HOH HOH . W 4 HOH F 5 705 504 HOH HOH . X 4 HOH G 1 701 503 HOH HOH . X 4 HOH G 2 702 504 HOH HOH . Y 4 HOH H 1 701 504 HOH HOH . Y 4 HOH H 2 702 503 HOH HOH . Y 4 HOH H 3 703 503 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . Q 2 -34.385 -33.343 68.157 1 93.52 0 PA NAI 601 H 1 HETATM 2 O O1A NAI . . . Q 2 -34.328 -31.892 67.812 1 92.5 0 O1A NAI 601 H 1 HETATM 3 O O2A NAI . . . Q 2 -33.283 -33.888 69.002 1 97.48 0 O2A NAI 601 H 1 HETATM 4 O O5B NAI . . . Q 2 -34.491 -34.209 66.809 1 87.53 0 O5B NAI 601 H 1 HETATM 5 C C5B NAI . . . Q 2 -33.3 -34.819 66.242 1 83 0 C5B NAI 601 H 1 HETATM 6 C C4B NAI . . . Q 2 -33.297 -36.302 66.528 1 80.78 0 C4B NAI 601 H 1 HETATM 7 O O4B NAI . . . Q 2 -32.664 -36.548 67.808 1 77.54 0 O4B NAI 601 H 1 HETATM 8 C C3B NAI . . . Q 2 -34.664 -36.985 66.64 1 80.13 0 C3B NAI 601 H 1 HETATM 9 O O3B NAI . . . Q 2 -35.143 -37.358 65.354 1 82.8 0 O3B NAI 601 H 1 HETATM 10 C C2B NAI . . . Q 2 -34.339 -38.198 67.516 1 77.64 0 C2B NAI 601 H 1 HETATM 11 O O2B NAI . . . Q 2 -33.827 -39.277 66.763 1 75.39 0 O2B NAI 601 H 1 HETATM 12 C C1B NAI . . . Q 2 -33.274 -37.641 68.46 1 77.01 0 C1B NAI 601 H 1 HETATM 13 N N9A NAI . . . Q 2 -33.79 -37.18 69.745 1 77.53 0 N9A NAI 601 H 1 HETATM 14 C C8A NAI . . . Q 2 -34.968 -36.512 69.977 1 77.62 0 C8A NAI 601 H 1 HETATM 15 N N7A NAI . . . Q 2 -35.166 -36.225 71.24 1 76.65 0 N7A NAI 601 H 1 HETATM 16 C C5A NAI . . . Q 2 -34.045 -36.727 71.886 1 76.94 0 C5A NAI 601 H 1 HETATM 17 C C6A NAI . . . Q 2 -33.657 -36.737 73.241 1 76.24 0 C6A NAI 601 H 1 HETATM 18 N N6A NAI . . . Q 2 -34.383 -36.206 74.22 1 77.1 0 N6A NAI 601 H 1 HETATM 19 N N1A NAI . . . Q 2 -32.474 -37.321 73.552 1 74.9 0 N1A NAI 601 H 1 HETATM 20 C C2A NAI . . . Q 2 -31.747 -37.852 72.561 1 76 0 C2A NAI 601 H 1 HETATM 21 N N3A NAI . . . Q 2 -32.009 -37.901 71.257 1 77.16 0 N3A NAI 601 H 1 HETATM 22 C C4A NAI . . . Q 2 -33.188 -37.317 70.976 1 77.75 0 C4A NAI 601 H 1 HETATM 23 O O3 NAI . . . Q 2 -35.782 -33.676 68.887 1 97.69 0 O3 NAI 601 H 1 HETATM 24 P PN NAI . . . Q 2 -37.338 -33.275 68.771 1 99.01 0 PN NAI 601 H 1 HETATM 25 O O1N NAI . . . Q 2 -37.958 -33.377 70.126 1 96.33 0 O1N NAI 601 H 1 HETATM 26 O O2N NAI . . . Q 2 -37.957 -34.069 67.667 1 98.13 0 O2N NAI 601 H 1 HETATM 27 O O5D NAI . . . Q 2 -37.239 -31.727 68.344 1 94.84 0 O5D NAI 601 H 1 HETATM 28 C C5D NAI . . . Q 2 -38.175 -31.151 67.393 1 88.25 0 C5D NAI 601 H 1 HETATM 29 C C4D NAI . . . Q 2 -37.619 -31.265 65.993 1 85.73 0 C4D NAI 601 H 1 HETATM 30 O O4D NAI . . . Q 2 -36.981 -30.021 65.616 1 85.56 0 O4D NAI 601 H 1 HETATM 31 C C3D NAI . . . Q 2 -36.543 -32.341 65.767 1 84.44 0 C3D NAI 601 H 1 HETATM 32 O O3D NAI . . . Q 2 -37.077 -33.494 65.128 1 84.17 0 O3D NAI 601 H 1 HETATM 33 C C2D NAI . . . Q 2 -35.462 -31.616 64.954 1 84.88 0 C2D NAI 601 H 1 HETATM 34 O O2D NAI . . . Q 2 -35.015 -32.359 63.829 1 83.7 0 O2D NAI 601 H 1 HETATM 35 C C1D NAI . . . Q 2 -36.135 -30.313 64.535 1 87.07 0 C1D NAI 601 H 1 HETATM 36 N N1N NAI . . . Q 2 -35.154 -29.211 64.318 1 87.37 0 N1N NAI 601 H 1 HETATM 37 C C2N NAI . . . Q 2 -34.105 -29.408 63.463 1 88.59 0 C2N NAI 601 H 1 HETATM 38 C C3N NAI . . . Q 2 -32.903 -28.8 63.672 1 89.2 0 C3N NAI 601 H 1 HETATM 39 C C7N NAI . . . Q 2 -31.685 -29.404 63.069 1 90.44 0 C7N NAI 601 H 1 HETATM 40 O O7N NAI . . . Q 2 -31.786 -30.295 62.218 1 90.14 0 O7N NAI 601 H 1 HETATM 41 N N7N NAI . . . Q 2 -30.506 -28.953 63.471 1 90.14 0 N7N NAI 601 H 1 HETATM 42 C C4N NAI . . . Q 2 -32.905 -27.559 64.496 1 88.45 0 C4N NAI 601 H 1 HETATM 43 C C5N NAI . . . Q 2 -34.211 -27.232 65.126 1 87.24 0 C5N NAI 601 H 1 HETATM 44 C C6N NAI . . . Q 2 -35.27 -27.991 64.943 1 86.15 0 C6N NAI 601 H 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 44 #