data_8WG4
#
_model_server_result.job_id            FZJxLgiqkcJRKNS05jrMNA 
_model_server_result.datetime_utc      '2024-11-04 23:46:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wg4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1207}' 
#
_entry.id    8WG4 
#
_exptl.entry_id    8WG4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8WG4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8WG4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A C PHE 125 A PHE 125 1_555 A N P1L 126 A P1L 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 A C P1L 126 A P1L 126 1_555 A N SER 127 A SER 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 567 n n 
CBA CAB Y01 sing 568 n n 
CBA CAN Y01 sing 569 n n 
CAN CAJ Y01 sing 570 n n 
CAJ CAO Y01 sing 571 n n 
CAO CBB Y01 sing 572 n n 
CBB CAC Y01 sing 573 n n 
CBB CBE Y01 sing 574 n n 
CBE CAP Y01 sing 575 n n 
CBE CBI Y01 sing 576 n n 
CAP CAQ Y01 sing 577 n n 
CAQ CBG Y01 sing 578 n n 
CBG CBI Y01 sing 579 n n 
CBG CBD Y01 sing 580 n n 
CBI CAE Y01 sing 581 n n 
CBI CAU Y01 sing 582 n n 
CAU CAS Y01 sing 583 n n 
CAS CBF Y01 sing 584 n n 
CBF CBD Y01 sing 585 n n 
CBF CBH Y01 sing 586 n n 
CBD CAK Y01 sing 587 n n 
CAK CAI Y01 sing 588 n n 
CAI CAZ Y01 doub 589 n n 
CAZ CAV Y01 sing 590 n n 
CAZ CBH Y01 sing 591 n n 
CAV CBC Y01 sing 592 n n 
CBH CAD Y01 sing 593 n n 
CBH CAT Y01 sing 594 n n 
CAT CAR Y01 sing 595 n n 
CAR CBC Y01 sing 596 n n 
CBC OAW Y01 sing 597 n n 
OAW CAY Y01 sing 598 n n 
CAY OAG Y01 doub 599 n n 
CAY CAM Y01 sing 600 n n 
CAM CAL Y01 sing 601 n n 
CAL CAX Y01 sing 602 n n 
CAX OAH Y01 sing 603 n n 
CAX OAF Y01 doub 604 n n 
CAA HAA1 Y01 sing 605 n n 
CAA HAA2 Y01 sing 606 n n 
CAA HAA3 Y01 sing 607 n n 
CBA HBA Y01 sing 608 n n 
CAB HAB1 Y01 sing 609 n n 
CAB HAB2 Y01 sing 610 n n 
CAB HAB3 Y01 sing 611 n n 
CAN HAN1 Y01 sing 612 n n 
CAN HAN2 Y01 sing 613 n n 
CAJ HAJ1 Y01 sing 614 n n 
CAJ HAJ2 Y01 sing 615 n n 
CAO HAO1 Y01 sing 616 n n 
CAO HAO2 Y01 sing 617 n n 
CBB HBB Y01 sing 618 n n 
CAC HAC1 Y01 sing 619 n n 
CAC HAC2 Y01 sing 620 n n 
CAC HAC3 Y01 sing 621 n n 
CBE HBE Y01 sing 622 n n 
CAP HAP1 Y01 sing 623 n n 
CAP HAP2 Y01 sing 624 n n 
CAQ HAQ1 Y01 sing 625 n n 
CAQ HAQ2 Y01 sing 626 n n 
CBG HBG Y01 sing 627 n n 
CBD HBD Y01 sing 628 n n 
CAE HAE1 Y01 sing 629 n n 
CAE HAE2 Y01 sing 630 n n 
CAE HAE3 Y01 sing 631 n n 
CAU HAU1 Y01 sing 632 n n 
CAU HAU2 Y01 sing 633 n n 
CAS HAS1 Y01 sing 634 n n 
CAS HAS2 Y01 sing 635 n n 
CBF HBF Y01 sing 636 n n 
CAK HAK1 Y01 sing 637 n n 
CAK HAK2 Y01 sing 638 n n 
CAI HAI Y01 sing 639 n n 
CAV HAV1 Y01 sing 640 n n 
CAV HAV2 Y01 sing 641 n n 
CBC HBC Y01 sing 642 n n 
CAD HAD1 Y01 sing 643 n n 
CAD HAD2 Y01 sing 644 n n 
CAD HAD3 Y01 sing 645 n n 
CAT HAT1 Y01 sing 646 n n 
CAT HAT2 Y01 sing 647 n n 
CAR HAR1 Y01 sing 648 n n 
CAR HAR2 Y01 sing 649 n n 
CAM HAM1 Y01 sing 650 n n 
CAM HAM2 Y01 sing 651 n n 
CAL HAL1 Y01 sing 652 n n 
CAL HAL2 Y01 sing 653 n n 
OAH HAH Y01 sing 654 n n 
#
_atom_sites.entry_id                     8WG4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LBN A 1 1201 801 LBN LBN . 
C 3 Y01 A 1 1202 802 Y01 Y01 . 
D 3 Y01 A 1 1203 803 Y01 Y01 . 
E 3 Y01 A 1 1204 804 Y01 Y01 . 
F 3 Y01 A 1 1205 805 Y01 Y01 . 
G 3 Y01 A 1 1206 806 Y01 Y01 . 
H 3 Y01 A 1 1207 807 Y01 Y01 . 
I 3 Y01 A 1 1208 808 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . H 3 112.514 118.856 117.894 1 133.85 ? CAA Y01 1207 A 1 
HETATM 2 C CBA Y01 . . . H 3 112.54 117.353 117.881 1 135.35 ? CBA Y01 1207 A 1 
HETATM 3 C CAB Y01 . . . H 3 111.381 116.809 118.71 1 160.77 ? CAB Y01 1207 A 1 
HETATM 4 C CAN Y01 . . . H 3 113.888 116.854 118.382 1 129.66 ? CAN Y01 1207 A 1 
HETATM 5 C CAJ Y01 . . . H 3 114.228 117.21 119.818 1 135.75 ? CAJ Y01 1207 A 1 
HETATM 6 C CAO Y01 . . . H 3 115.404 116.43 120.341 1 154.86 ? CAO Y01 1207 A 1 
HETATM 7 C CBB Y01 . . . H 3 116.214 117.09 121.468 1 140.54 ? CBB Y01 1207 A 1 
HETATM 8 C CAC Y01 . . . H 3 115.951 116.362 122.779 1 149.8 ? CAC Y01 1207 A 1 
HETATM 9 C CBE Y01 . . . H 3 117.697 117.115 121.061 1 127.58 ? CBE Y01 1207 A 1 
HETATM 10 C CAP Y01 . . . H 3 117.983 118.234 120.023 1 130.71 ? CAP Y01 1207 A 1 
HETATM 11 C CAQ Y01 . . . H 3 119.474 118.593 120.169 1 135.18 ? CAQ Y01 1207 A 1 
HETATM 12 C CBG Y01 . . . H 3 119.999 117.539 121.136 1 118.66 ? CBG Y01 1207 A 1 
HETATM 13 C CBI Y01 . . . H 3 118.827 117.309 122.113 1 121.36 ? CBI Y01 1207 A 1 
HETATM 14 C CAE Y01 . . . H 3 118.536 118.532 123.003 1 123.41 ? CAE Y01 1207 A 1 
HETATM 15 C CAU Y01 . . . H 3 119.18 116.084 122.963 1 121.09 ? CAU Y01 1207 A 1 
HETATM 16 C CAS Y01 . . . H 3 120.563 116.213 123.616 1 111.57 ? CAS Y01 1207 A 1 
HETATM 17 C CBF Y01 . . . H 3 121.692 116.502 122.615 1 101.24 ? CBF Y01 1207 A 1 
HETATM 18 C CBD Y01 . . . H 3 121.362 117.744 121.773 1 107.66 ? CBD Y01 1207 A 1 
HETATM 19 C CAK Y01 . . . H 3 122.421 117.961 120.701 1 113.71 ? CAK Y01 1207 A 1 
HETATM 20 C CAI Y01 . . . H 3 123.812 117.656 121.158 1 127.89 ? CAI Y01 1207 A 1 
HETATM 21 C CAZ Y01 . . . H 3 124.135 117.09 122.305 1 116.91 ? CAZ Y01 1207 A 1 
HETATM 22 C CAV Y01 . . . H 3 125.588 116.922 122.695 1 108.94 ? CAV Y01 1207 A 1 
HETATM 23 C CBH Y01 . . . H 3 123.086 116.586 123.289 1 109.46 ? CBH Y01 1207 A 1 
HETATM 24 C CAD Y01 . . . H 3 123.083 117.551 124.489 1 131.78 ? CAD Y01 1207 A 1 
HETATM 25 C CAT Y01 . . . H 3 123.479 115.177 123.765 1 109.85 ? CAT Y01 1207 A 1 
HETATM 26 C CAR Y01 . . . H 3 124.935 115.105 124.223 1 121.46 ? CAR Y01 1207 A 1 
HETATM 27 C CBC Y01 . . . H 3 125.851 115.494 123.095 1 120.95 ? CBC Y01 1207 A 1 
HETATM 28 O OAW Y01 . . . H 3 127.196 115.266 123.605 1 117.18 ? OAW Y01 1207 A 1 
HETATM 29 C CAY Y01 . . . H 3 128.207 115.12 122.773 1 112.88 ? CAY Y01 1207 A 1 
HETATM 30 O OAG Y01 . . . H 3 128.563 115.929 121.977 1 102.72 ? OAG Y01 1207 A 1 
HETATM 31 C CAM Y01 . . . H 3 128.615 113.688 122.739 1 132.76 ? CAM Y01 1207 A 1 
HETATM 32 C CAL Y01 . . . H 3 130.094 113.445 122.753 1 138.75 ? CAL Y01 1207 A 1 
HETATM 33 C CAX Y01 . . . H 3 130.804 114.076 123.932 1 126.89 ? CAX Y01 1207 A 1 
HETATM 34 O OAH Y01 . . . H 3 131.386 113.313 124.739 1 121.56 ? OAH Y01 1207 A 1 
HETATM 35 O OAF Y01 . . . H 3 130.773 115.32 124.036 1 120.41 ? OAF Y01 1207 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#