data_8WG9 # _model_server_result.job_id tIqiniQWxdjSJF8l7ZiCMw _model_server_result.datetime_utc '2024-12-26 14:37:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 8WG9 # _exptl.entry_id 8WG9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 183.1 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-amino-4-phosphonobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 B CYS 67 1_555 A SG CYS 77 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 217 B CYS 249 1_555 A SG CYS 506 B CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 396 B CYS 428 1_555 A SG CYS 403 B CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 488 B CYS 520 1_555 A SG CYS 507 B CYS 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 492 B CYS 524 1_555 A SG CYS 510 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 513 B CYS 545 1_555 A SG CYS 525 B CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf7 A SG CYS 528 B CYS 560 1_555 A SG CYS 541 B CYS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf8 A SG CYS 620 B CYS 652 1_555 A SG CYS 714 B CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 B SG CYS 32 C CYS 50 1_555 B SG CYS 74 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf10 B SG CYS 216 C CYS 234 1_555 B SG CYS 500 C CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf11 B SG CYS 337 C CYS 355 1_555 B SG CYS 344 C CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf12 B SG CYS 382 C CYS 400 1_555 B SG CYS 389 C CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 B SG CYS 482 C CYS 500 1_555 B SG CYS 501 C CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 B SG CYS 486 C CYS 504 1_555 B SG CYS 504 C CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 507 C CYS 525 1_555 B SG CYS 519 C CYS 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf16 B SG CYS 614 C CYS 632 1_555 B SG CYS 703 C CYS 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C4 H10 N O5 P' _chem_comp.formula_weight 183.1 _chem_comp.id E7P _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-amino-4-phosphonobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 P E7P doub 83 n n O C E7P doub 84 n n CA C E7P sing 85 n n CA N E7P sing 86 n n CA C2 E7P sing 87 n n C OXT E7P sing 88 n n P O3 E7P sing 89 n n P C1 E7P sing 90 n n P O1 E7P sing 91 n n C1 C2 E7P sing 92 n n O1 H1 E7P sing 93 n n C1 H4 E7P sing 94 n n C1 H3 E7P sing 95 n n CA HA E7P sing 96 n n C2 H5 E7P sing 97 n n C2 H6 E7P sing 98 n n OXT HXT E7P sing 99 n n N H E7P sing 100 n n N H2 E7P sing 101 n n O3 H11 E7P sing 102 n n # _atom_sites.entry_id 8WG9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id E7P _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1001 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id E7P _pdbx_nonpoly_scheme.auth_mon_id LAP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 E7P . . . C 3 199.451 220.145 110.804 1 20 ? O1 E7P 1001 B 1 HETATM 2 O O2 E7P . . . C 3 200.275 222.352 110.4 1 20 ? O2 E7P 1001 B 1 HETATM 3 C C1 E7P . . . C 3 200.291 221.442 113.02 1 20 ? C1 E7P 1001 B 1 HETATM 4 C C E7P . . . C 3 198.626 219.447 114.947 1 20 ? C E7P 1001 B 1 HETATM 5 C CA E7P . . . C 3 198.43 219.867 113.51 1 20 ? CA E7P 1001 B 1 HETATM 6 C C2 E7P . . . C 3 198.819 221.326 113.359 1 20 ? C2 E7P 1001 B 1 HETATM 7 O O E7P . . . C 3 199.778 219.355 115.423 1 20 ? O E7P 1001 B 1 HETATM 8 O OXT E7P . . . C 3 197.625 219.192 115.65 1 20 ? OXT E7P 1001 B 1 HETATM 9 N N E7P . . . C 3 197.033 219.734 113.189 1 20 ? N E7P 1001 B 1 HETATM 10 P P E7P . . . C 3 200.484 221.13 111.215 1 20 ? P E7P 1001 B 1 HETATM 11 O O3 E7P . . . C 3 201.865 220.622 110.936 1 20 ? O3 E7P 1001 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #