data_8WGD
#
_model_server_result.job_id            POa7Uynrtvk2zm1fT5R7Ew 
_model_server_result.datetime_utc      '2024-12-23 05:46:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8wgd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    8WGD 
#
_exptl.entry_id    8WGD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              353.369 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,2R)-2-[(2S)-2-azanyl-1-oxidanyl-1-oxidanylidene-3-(9H-xanthen-9-yl)propan-2-yl]cyclopropane-1-carboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H19 N O5' 
_chem_comp.formula_weight    353.369 
_chem_comp.id                WAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,2R)-2-[(2S)-2-azanyl-1-oxidanyl-1-oxidanylidene-3-(9H-xanthen-9-yl)propan-2-yl]cyclopropane-1-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C23 WAG doub 407 n y 
C25 C21 WAG sing 408 n y 
C23 C19 WAG sing 409 n y 
C21 C17 WAG doub 410 n y 
O02 C14 WAG doub 411 n n 
C19 C15 WAG doub 412 n y 
C17 C15 WAG sing 413 n y 
C17 O05 WAG sing 414 n n 
C15 C13 WAG sing 415 n n 
C14 O04 WAG sing 416 n n 
C14 C10 WAG sing 417 n n 
O05 C18 WAG sing 418 n n 
C11 C10 WAG sing 419 n n 
C11 C13 WAG sing 420 n n 
N06 C10 WAG sing 421 n n 
C10 C07 WAG sing 422 n n 
C13 C16 WAG sing 423 n n 
C18 C16 WAG doub 424 n y 
C18 C22 WAG sing 425 n y 
C16 C20 WAG sing 426 n y 
C07 C09 WAG sing 427 n n 
C07 C08 WAG sing 428 n n 
C22 C26 WAG doub 429 n y 
C09 C08 WAG sing 430 n n 
O03 C12 WAG doub 431 n n 
C20 C24 WAG doub 432 n y 
C08 C12 WAG sing 433 n n 
C12 O01 WAG sing 434 n n 
C26 C24 WAG sing 435 n y 
C11 H1 WAG sing 436 n n 
C11 H2 WAG sing 437 n n 
C13 H3 WAG sing 438 n n 
C19 H4 WAG sing 439 n n 
C20 H5 WAG sing 440 n n 
O01 H6 WAG sing 441 n n 
O04 H7 WAG sing 442 n n 
N06 H8 WAG sing 443 n n 
N06 H10 WAG sing 444 n n 
C07 H11 WAG sing 445 n n 
C08 H12 WAG sing 446 n n 
C09 H13 WAG sing 447 n n 
C09 H14 WAG sing 448 n n 
C21 H15 WAG sing 449 n n 
C22 H16 WAG sing 450 n n 
C23 H17 WAG sing 451 n n 
C24 H18 WAG sing 452 n n 
C25 H19 WAG sing 453 n n 
C26 H20 WAG sing 454 n n 
#
_atom_sites.entry_id                     8WGD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 WAG C 1 901 1 WAG LY3 . 
D 4 WA6 B 1 1001 1 WA6 CPP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 WAG . . . C 3 203.383 174.198 111.871 1 20 ? C10 WAG 901 C 1 
HETATM 2 C C11 WAG . . . C 3 204.17 172.891 111.74 1 20 ? C11 WAG 901 C 1 
HETATM 3 C C12 WAG . . . C 3 204.703 173.757 114.672 1 20 ? C12 WAG 901 C 1 
HETATM 4 C C13 WAG . . . C 3 203.14 171.682 111.938 1 20 ? C13 WAG 901 C 1 
HETATM 5 C C14 WAG . . . C 3 202.447 174.281 110.681 1 20 ? C14 WAG 901 C 1 
HETATM 6 C C15 WAG . . . C 3 202.978 171.091 110.6 1 20 ? C15 WAG 901 C 1 
HETATM 7 C C16 WAG . . . C 3 203.691 170.821 113.029 1 20 ? C16 WAG 901 C 1 
HETATM 8 C C17 WAG . . . C 3 204.18 170.281 110.164 1 20 ? C17 WAG 901 C 1 
HETATM 9 C C18 WAG . . . C 3 204.895 170.016 112.6 1 20 ? C18 WAG 901 C 1 
HETATM 10 C C19 WAG . . . C 3 201.761 171.267 109.691 1 20 ? C19 WAG 901 C 1 
HETATM 11 C C20 WAG . . . C 3 203.16 170.724 114.466 1 20 ? C20 WAG 901 C 1 
HETATM 12 O O01 WAG . . . C 3 205.143 172.708 115.214 1 20 ? O01 WAG 901 C 1 
HETATM 13 O O02 WAG . . . C 3 202.83 173.931 109.53 1 20 ? O02 WAG 901 C 1 
HETATM 14 O O03 WAG . . . C 3 205.508 174.641 114.276 1 20 ? O03 WAG 901 C 1 
HETATM 15 O O04 WAG . . . C 3 201.269 174.696 110.834 1 20 ? O04 WAG 901 C 1 
HETATM 16 O O05 WAG . . . C 3 205.268 170.251 111.181 1 20 ? O05 WAG 901 C 1 
HETATM 17 N N06 WAG . . . C 3 204.327 175.311 111.803 1 20 ? N06 WAG 901 C 1 
HETATM 18 C C07 WAG . . . C 3 202.538 174.218 113.158 1 20 ? C07 WAG 901 C 1 
HETATM 19 C C08 WAG . . . C 3 203.185 173.949 114.525 1 20 ? C08 WAG 901 C 1 
HETATM 20 C C09 WAG . . . C 3 202.742 175.369 114.145 1 20 ? C09 WAG 901 C 1 
HETATM 21 C C21 WAG . . . C 3 204.171 169.618 108.778 1 20 ? C21 WAG 901 C 1 
HETATM 22 C C22 WAG . . . C 3 205.594 169.089 113.611 1 20 ? C22 WAG 901 C 1 
HETATM 23 C C23 WAG . . . C 3 201.736 170.608 108.312 1 20 ? C23 WAG 901 C 1 
HETATM 24 C C24 WAG . . . C 3 203.845 169.801 115.483 1 20 ? C24 WAG 901 C 1 
HETATM 25 C C25 WAG . . . C 3 202.95 169.775 107.852 1 20 ? C25 WAG 901 C 1 
HETATM 26 C C26 WAG . . . C 3 205.07 168.977 115.052 1 20 ? C26 WAG 901 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#