data_8WGR # _model_server_result.job_id J10kLOskcR64Bg1fndne4w _model_server_result.datetime_utc '2025-07-08 04:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wgr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8WGR # _exptl.entry_id 8WGR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 266.381 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WGR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WGR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 176 A CYS 176 1_555 A SG CYS 185 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O ALA 73 A ALA 73 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc2 A OD2 ASP 75 A ASP 75 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc3 A OD1 ASN 78 A ASN 78 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc4 A O SER 318 A SER 318 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc5 A OD1 ASN 350 A ASN 350 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? # _chem_comp.formula 'C18 H22 N2' _chem_comp.formula_weight 266.381 _chem_comp.id DSM _chem_comp.mon_nstd_flag . _chem_comp.name 3-(10,11-DIHYDRO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N-METHYLPROPAN-1-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Desipramine;Norpramin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 N2 DSM sing 83 n n C18 H181 DSM sing 84 n n C18 H182 DSM sing 85 n n C18 H183 DSM sing 86 n n N2 C17 DSM sing 87 n n N2 HN2 DSM sing 88 n n C17 C16 DSM sing 89 n n C17 H171 DSM sing 90 n n C17 H172 DSM sing 91 n n C16 C15 DSM sing 92 n n C16 H161 DSM sing 93 n n C16 H162 DSM sing 94 n n C15 N1 DSM sing 95 n n C15 H151 DSM sing 96 n n C15 H152 DSM sing 97 n n N1 C11 DSM sing 98 n n N1 C14 DSM sing 99 n n C14 C1 DSM sing 100 n y C14 C13 DSM doub 101 n y C1 C2 DSM doub 102 n y C1 H1 DSM sing 103 n n C2 C3 DSM sing 104 n y C2 H2 DSM sing 105 n n C3 C4 DSM doub 106 n y C3 H3 DSM sing 107 n n C4 C13 DSM sing 108 n y C4 H4 DSM sing 109 n n C13 C5 DSM sing 110 n n C5 C6 DSM sing 111 n n C5 H51 DSM sing 112 n n C5 H52 DSM sing 113 n n C6 C12 DSM sing 114 n n C6 H61 DSM sing 115 n n C6 H62 DSM sing 116 n n C12 C11 DSM doub 117 n y C12 C7 DSM sing 118 n y C11 C10 DSM sing 119 n y C7 C8 DSM doub 120 n y C7 H7 DSM sing 121 n n C8 C9 DSM sing 122 n y C8 H8 DSM sing 123 n n C9 C10 DSM doub 124 n y C9 H9 DSM sing 125 n n C10 H10 DSM sing 126 n n # _atom_sites.entry_id 8WGR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DSM A 1 701 701 DSM DSP . C 2 DSM A 1 702 702 DSM DSP . D 3 CL A 1 703 703 CL CL . E 4 K A 1 704 704 K K . F 5 HOH A 1 801 2 HOH HOH . F 5 HOH A 2 802 19 HOH HOH . F 5 HOH A 3 803 24 HOH HOH . F 5 HOH A 4 804 5 HOH HOH . F 5 HOH A 5 805 7 HOH HOH . F 5 HOH A 6 806 29 HOH HOH . F 5 HOH A 7 807 25 HOH HOH . F 5 HOH A 8 808 8 HOH HOH . F 5 HOH A 9 809 28 HOH HOH . F 5 HOH A 10 810 36 HOH HOH . F 5 HOH A 11 811 11 HOH HOH . F 5 HOH A 12 812 4 HOH HOH . F 5 HOH A 13 813 15 HOH HOH . F 5 HOH A 14 814 3 HOH HOH . F 5 HOH A 15 815 27 HOH HOH . F 5 HOH A 16 816 13 HOH HOH . F 5 HOH A 17 817 10 HOH HOH . F 5 HOH A 18 818 16 HOH HOH . F 5 HOH A 19 819 14 HOH HOH . F 5 HOH A 20 820 17 HOH HOH . F 5 HOH A 21 821 39 HOH HOH . F 5 HOH A 22 822 38 HOH HOH . F 5 HOH A 23 823 6 HOH HOH . F 5 HOH A 24 824 31 HOH HOH . F 5 HOH A 25 825 33 HOH HOH . F 5 HOH A 26 826 26 HOH HOH . F 5 HOH A 27 827 32 HOH HOH . F 5 HOH A 28 828 1 HOH HOH . F 5 HOH A 29 829 30 HOH HOH . F 5 HOH A 30 830 20 HOH HOH . F 5 HOH A 31 831 18 HOH HOH . F 5 HOH A 32 832 12 HOH HOH . F 5 HOH A 33 833 37 HOH HOH . F 5 HOH A 34 834 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 DSM . . . B 2 97.922 106.079 101.108 1 40.08 ? C18 DSM 701 A 1 HETATM 2 N N2 DSM . . . B 2 98.522 106.131 102.451 1 47.9 ? N2 DSM 701 A 1 HETATM 3 C C17 DSM . . . B 2 99.055 104.842 102.905 1 50.65 ? C17 DSM 701 A 1 HETATM 4 C C16 DSM . . . B 2 97.973 103.799 103.101 1 46.68 ? C16 DSM 701 A 1 HETATM 5 C C15 DSM . . . B 2 98.508 102.374 103.125 1 40.42 ? C15 DSM 701 A 1 HETATM 6 N N1 DSM . . . B 2 99.439 102.113 102.018 1 44.96 ? N1 DSM 701 A 1 HETATM 7 C C14 DSM . . . B 2 98.834 102.291 100.726 1 48.08 ? C14 DSM 701 A 1 HETATM 8 C C1 DSM . . . B 2 97.459 102.115 100.516 1 47.15 ? C1 DSM 701 A 1 HETATM 9 C C2 DSM . . . B 2 96.928 102.313 99.258 1 41.96 ? C2 DSM 701 A 1 HETATM 10 C C3 DSM . . . B 2 97.74 102.691 98.215 1 41.25 ? C3 DSM 701 A 1 HETATM 11 C C4 DSM . . . B 2 99.091 102.869 98.424 1 45.68 ? C4 DSM 701 A 1 HETATM 12 C C13 DSM . . . B 2 99.666 102.683 99.68 1 48.46 ? C13 DSM 701 A 1 HETATM 13 C C5 DSM . . . B 2 101.133 102.856 99.981 1 46.64 ? C5 DSM 701 A 1 HETATM 14 C C6 DSM . . . B 2 101.861 101.531 100.319 1 44.15 ? C6 DSM 701 A 1 HETATM 15 C C12 DSM . . . B 2 101.216 100.586 101.309 1 45.54 ? C12 DSM 701 A 1 HETATM 16 C C11 DSM . . . B 2 100.086 100.829 102.102 1 43.98 ? C11 DSM 701 A 1 HETATM 17 C C7 DSM . . . B 2 101.819 99.333 101.421 1 51.36 ? C7 DSM 701 A 1 HETATM 18 C C8 DSM . . . B 2 101.347 98.366 102.281 1 48.83 ? C8 DSM 701 A 1 HETATM 19 C C9 DSM . . . B 2 100.244 98.621 103.059 1 39.52 ? C9 DSM 701 A 1 HETATM 20 C C10 DSM . . . B 2 99.611 99.843 102.983 1 38.15 ? C10 DSM 701 A 1 HETATM 21 H H181 DSM . . . B 2 98.562 105.694 100.479 1 45.23 ? H181 DSM 701 A 1 HETATM 22 H H182 DSM . . . B 2 97.114 105.532 101.127 1 44.36 ? H182 DSM 701 A 1 HETATM 23 H H183 DSM . . . B 2 97.692 106.983 100.819 1 45.41 ? H183 DSM 701 A 1 HETATM 24 H HN2 DSM . . . B 2 97.9 106.404 103.038 1 45.85 ? HN2 DSM 701 A 1 HETATM 25 H H171 DSM . . . B 2 99.53 104.973 103.752 1 45.48 ? H171 DSM 701 A 1 HETATM 26 H H172 DSM . . . B 2 99.705 104.516 102.249 1 46.47 ? H172 DSM 701 A 1 HETATM 27 H H161 DSM . . . B 2 97.312 103.88 102.387 1 45.42 ? H161 DSM 701 A 1 HETATM 28 H H162 DSM . . . B 2 97.513 103.976 103.947 1 45.55 ? H162 DSM 701 A 1 HETATM 29 H H151 DSM . . . B 2 98.98 102.225 103.98 1 44.88 ? H151 DSM 701 A 1 HETATM 30 H H152 DSM . . . B 2 97.752 101.74 103.086 1 43.79 ? H152 DSM 701 A 1 HETATM 31 H H1 DSM . . . B 2 96.898 101.856 101.224 1 46.1 ? H1 DSM 701 A 1 HETATM 32 H H2 DSM . . . B 2 96.004 102.189 99.115 1 45.39 ? H2 DSM 701 A 1 HETATM 33 H H3 DSM . . . B 2 97.374 102.824 97.355 1 45.53 ? H3 DSM 701 A 1 HETATM 34 H H4 DSM . . . B 2 99.64 103.129 97.704 1 45.53 ? H4 DSM 701 A 1 HETATM 35 H H51 DSM . . . B 2 101.568 103.266 99.202 1 46.27 ? H51 DSM 701 A 1 HETATM 36 H H52 DSM . . . B 2 101.231 103.474 100.74 1 44.81 ? H52 DSM 701 A 1 HETATM 37 H H61 DSM . . . B 2 102.004 101.041 99.479 1 45.33 ? H61 DSM 701 A 1 HETATM 38 H H62 DSM . . . B 2 102.758 101.755 100.653 1 45.22 ? H62 DSM 701 A 1 HETATM 39 H H7 DSM . . . B 2 102.578 99.147 100.893 1 45.91 ? H7 DSM 701 A 1 HETATM 40 H H8 DSM . . . B 2 101.78 97.529 102.334 1 45.35 ? H8 DSM 701 A 1 HETATM 41 H H9 DSM . . . B 2 99.917 97.959 103.647 1 44.06 ? H9 DSM 701 A 1 HETATM 42 H H10 DSM . . . B 2 98.855 100.006 103.516 1 44.22 ? H10 DSM 701 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 42 #