data_8WIH # _model_server_result.job_id 1A4T5pF4HekVQC-jTk0OzQ _model_server_result.datetime_utc '2024-11-22 23:48:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8WIH # _exptl.entry_id 8WIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WIH _cell.length_a 87.175 _cell.length_b 109.376 _cell.length_c 113.793 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 94 A CYS 334 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A NE2 HIS 145 A HIS 385 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A ND1 HIS 271 A HIS 511 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 D ZN ZN . A ZN 702 1_555 G O HOH . A HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc5 B SG CYS 94 B CYS 334 1_555 F ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 B NE2 HIS 145 B HIS 385 1_555 F ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc7 B ND1 HIS 271 B HIS 511 1_555 F ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8WIH _atom_sites.fract_transf_matrix[1][1] 0.011471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 701 701 ATP ATP . D 3 ZN A 1 702 705 ZN ZN . E 2 ATP B 1 701 701 ATP ATP . F 3 ZN B 1 702 705 ZN ZN . G 4 HOH A 1 801 5 HOH HOH . G 4 HOH A 2 802 32 HOH HOH . G 4 HOH A 3 803 43 HOH HOH . G 4 HOH A 4 804 26 HOH HOH . G 4 HOH A 5 805 37 HOH HOH . G 4 HOH A 6 806 7 HOH HOH . G 4 HOH A 7 807 8 HOH HOH . G 4 HOH A 8 808 47 HOH HOH . G 4 HOH A 9 809 16 HOH HOH . G 4 HOH A 10 810 44 HOH HOH . G 4 HOH A 11 811 48 HOH HOH . G 4 HOH A 12 812 9 HOH HOH . G 4 HOH A 13 813 45 HOH HOH . G 4 HOH A 14 814 25 HOH HOH . G 4 HOH A 15 815 24 HOH HOH . G 4 HOH A 16 816 46 HOH HOH . G 4 HOH A 17 817 2 HOH HOH . G 4 HOH A 18 818 19 HOH HOH . G 4 HOH A 19 819 20 HOH HOH . G 4 HOH A 20 820 15 HOH HOH . G 4 HOH A 21 821 22 HOH HOH . G 4 HOH A 22 822 23 HOH HOH . G 4 HOH A 23 823 1 HOH HOH . G 4 HOH A 24 824 21 HOH HOH . H 4 HOH B 1 801 34 HOH HOH . H 4 HOH B 2 802 6 HOH HOH . H 4 HOH B 3 803 31 HOH HOH . H 4 HOH B 4 804 38 HOH HOH . H 4 HOH B 5 805 41 HOH HOH . H 4 HOH B 6 806 30 HOH HOH . H 4 HOH B 7 807 39 HOH HOH . H 4 HOH B 8 808 27 HOH HOH . H 4 HOH B 9 809 14 HOH HOH . H 4 HOH B 10 810 33 HOH HOH . H 4 HOH B 11 811 17 HOH HOH . H 4 HOH B 12 812 29 HOH HOH . H 4 HOH B 13 813 28 HOH HOH . H 4 HOH B 14 814 35 HOH HOH . H 4 HOH B 15 815 10 HOH HOH . H 4 HOH B 16 816 4 HOH HOH . H 4 HOH B 17 817 42 HOH HOH . H 4 HOH B 18 818 36 HOH HOH . H 4 HOH B 19 819 40 HOH HOH . H 4 HOH B 20 820 11 HOH HOH . H 4 HOH B 21 821 13 HOH HOH . H 4 HOH B 22 822 49 HOH HOH . H 4 HOH B 23 823 3 HOH HOH . H 4 HOH B 24 824 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ATP . . . C 2 -14.707 40.432 -15.129 0.64 44.18 ? PB ATP 701 A 1 HETATM 2 O O1B ATP . . . C 2 -15.979 41.236 -15.654 0.64 43.51 ? O1B ATP 701 A 1 HETATM 3 O O2B ATP . . . C 2 -15.004 40.007 -13.69 0.64 44.07 ? O2B ATP 701 A 1 HETATM 4 O O3B ATP . . . C 2 -13.455 41.192 -15.324 0.64 44.51 ? O3B ATP 701 A 1 HETATM 5 P PA ATP . . . C 2 -13.804 37.88 -16.334 0.64 42.43 ? PA ATP 701 A 1 HETATM 6 O O1A ATP . . . C 2 -12.643 38.401 -17.184 0.64 42.16 ? O1A ATP 701 A 1 HETATM 7 O O2A ATP . . . C 2 -13.405 37.183 -15.095 0.64 42.67 ? O2A ATP 701 A 1 HETATM 8 O O3A ATP . . . C 2 -14.759 39.12 -16.029 0.64 43.08 ? O3A ATP 701 A 1 HETATM 9 O O5' ATP . . . C 2 -14.711 36.965 -17.247 0.64 41.66 ? O5' ATP 701 A 1 HETATM 10 C C5' ATP . . . C 2 -14.583 36.98 -18.684 0.64 40.91 ? C5' ATP 701 A 1 HETATM 11 C C4' ATP . . . C 2 -15.89 37.421 -19.293 0.64 40.4 ? C4' ATP 701 A 1 HETATM 12 O O4' ATP . . . C 2 -16.989 36.861 -18.547 0.64 40.28 ? O4' ATP 701 A 1 HETATM 13 C C3' ATP . . . C 2 -16.148 38.921 -19.267 0.64 40.99 ? C3' ATP 701 A 1 HETATM 14 O O3' ATP . . . C 2 -15.503 39.572 -20.356 0.64 41.07 ? O3' ATP 701 A 1 HETATM 15 C C2' ATP . . . C 2 -17.674 38.989 -19.386 0.64 40.27 ? C2' ATP 701 A 1 HETATM 16 O O2' ATP . . . C 2 -18.103 38.983 -20.743 0.64 39.95 ? O2' ATP 701 A 1 HETATM 17 C C1' ATP . . . C 2 -18.123 37.706 -18.671 0.64 40.12 ? C1' ATP 701 A 1 HETATM 18 N N9 ATP . . . C 2 -18.686 37.927 -17.342 0.64 40.24 ? N9 ATP 701 A 1 HETATM 19 C C8 ATP . . . C 2 -17.999 38.108 -16.17 0.64 40.84 ? C8 ATP 701 A 1 HETATM 20 N N7 ATP . . . C 2 -18.766 38.286 -15.122 0.64 40.83 ? N7 ATP 701 A 1 HETATM 21 C C5 ATP . . . C 2 -20.051 38.217 -15.64 0.64 40.25 ? C5 ATP 701 A 1 HETATM 22 C C6 ATP . . . C 2 -21.323 38.327 -15.045 0.64 40.54 ? C6 ATP 701 A 1 HETATM 23 N N6 ATP . . . C 2 -21.519 38.54 -13.74 0.64 40.81 ? N6 ATP 701 A 1 HETATM 24 N N1 ATP . . . C 2 -22.404 38.21 -15.848 0.64 40.46 ? N1 ATP 701 A 1 HETATM 25 C C2 ATP . . . C 2 -22.216 37.997 -17.153 0.64 40.01 ? C2 ATP 701 A 1 HETATM 26 N N3 ATP . . . C 2 -21.069 37.877 -17.823 0.64 39.82 ? N3 ATP 701 A 1 HETATM 27 C C4 ATP . . . C 2 -20.016 37.996 -17.007 0.64 40.05 ? C4 ATP 701 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #