data_8WIH # _model_server_result.job_id N8L07LuFwerRrSPpGYbA0g _model_server_result.datetime_utc '2024-11-22 23:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 8WIH # _exptl.entry_id 8WIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WIH _cell.length_a 87.175 _cell.length_b 109.376 _cell.length_c 113.793 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 94 A CYS 334 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A NE2 HIS 145 A HIS 385 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A ND1 HIS 271 A HIS 511 1_555 D ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 D ZN ZN . A ZN 702 1_555 G O HOH . A HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc5 B SG CYS 94 B CYS 334 1_555 F ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 B NE2 HIS 145 B HIS 385 1_555 F ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc7 B ND1 HIS 271 B HIS 511 1_555 F ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8WIH _atom_sites.fract_transf_matrix[1][1] 0.011471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 701 701 ATP ATP . D 3 ZN A 1 702 705 ZN ZN . E 2 ATP B 1 701 701 ATP ATP . F 3 ZN B 1 702 705 ZN ZN . G 4 HOH A 1 801 5 HOH HOH . G 4 HOH A 2 802 32 HOH HOH . G 4 HOH A 3 803 43 HOH HOH . G 4 HOH A 4 804 26 HOH HOH . G 4 HOH A 5 805 37 HOH HOH . G 4 HOH A 6 806 7 HOH HOH . G 4 HOH A 7 807 8 HOH HOH . G 4 HOH A 8 808 47 HOH HOH . G 4 HOH A 9 809 16 HOH HOH . G 4 HOH A 10 810 44 HOH HOH . G 4 HOH A 11 811 48 HOH HOH . G 4 HOH A 12 812 9 HOH HOH . G 4 HOH A 13 813 45 HOH HOH . G 4 HOH A 14 814 25 HOH HOH . G 4 HOH A 15 815 24 HOH HOH . G 4 HOH A 16 816 46 HOH HOH . G 4 HOH A 17 817 2 HOH HOH . G 4 HOH A 18 818 19 HOH HOH . G 4 HOH A 19 819 20 HOH HOH . G 4 HOH A 20 820 15 HOH HOH . G 4 HOH A 21 821 22 HOH HOH . G 4 HOH A 22 822 23 HOH HOH . G 4 HOH A 23 823 1 HOH HOH . G 4 HOH A 24 824 21 HOH HOH . H 4 HOH B 1 801 34 HOH HOH . H 4 HOH B 2 802 6 HOH HOH . H 4 HOH B 3 803 31 HOH HOH . H 4 HOH B 4 804 38 HOH HOH . H 4 HOH B 5 805 41 HOH HOH . H 4 HOH B 6 806 30 HOH HOH . H 4 HOH B 7 807 39 HOH HOH . H 4 HOH B 8 808 27 HOH HOH . H 4 HOH B 9 809 14 HOH HOH . H 4 HOH B 10 810 33 HOH HOH . H 4 HOH B 11 811 17 HOH HOH . H 4 HOH B 12 812 29 HOH HOH . H 4 HOH B 13 813 28 HOH HOH . H 4 HOH B 14 814 35 HOH HOH . H 4 HOH B 15 815 10 HOH HOH . H 4 HOH B 16 816 4 HOH HOH . H 4 HOH B 17 817 42 HOH HOH . H 4 HOH B 18 818 36 HOH HOH . H 4 HOH B 19 819 40 HOH HOH . H 4 HOH B 20 820 11 HOH HOH . H 4 HOH B 21 821 13 HOH HOH . H 4 HOH B 22 822 49 HOH HOH . H 4 HOH B 23 823 3 HOH HOH . H 4 HOH B 24 824 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA ATP . . . E 2 -33.387 9.163 -10.94 0.73 39.46 ? PA ATP 701 B 1 HETATM 2 O O1A ATP . . . E 2 -34.625 8.445 -11.478 0.73 40.03 ? O1A ATP 701 B 1 HETATM 3 O O2A ATP . . . E 2 -33.664 10.216 -9.943 0.73 40.49 ? O2A ATP 701 B 1 HETATM 4 O O3A ATP . . . E 2 -32.413 8.045 -10.353 0.73 39.77 ? O3A ATP 701 B 1 HETATM 5 O O5' ATP . . . E 2 -32.567 9.725 -12.167 0.73 39.44 ? O5' ATP 701 B 1 HETATM 6 C C5' ATP . . . E 2 -32.804 9.249 -13.508 0.73 38.76 ? C5' ATP 701 B 1 HETATM 7 C C4' ATP . . . E 2 -31.531 8.647 -14.047 0.73 38.61 ? C4' ATP 701 B 1 HETATM 8 O O4' ATP . . . E 2 -30.398 9.405 -13.582 0.73 38.61 ? O4' ATP 701 B 1 HETATM 9 C C3' ATP . . . E 2 -31.248 7.222 -13.593 0.73 38.78 ? C3' ATP 701 B 1 HETATM 10 O O3' ATP . . . E 2 -31.929 6.296 -14.431 0.73 39.01 ? O3' ATP 701 B 1 HETATM 11 C C2' ATP . . . E 2 -29.728 7.12 -13.754 0.73 38.75 ? C2' ATP 701 B 1 HETATM 12 O O2' ATP . . . E 2 -29.362 6.699 -15.064 0.73 38.91 ? O2' ATP 701 B 1 HETATM 13 C C1' ATP . . . E 2 -29.261 8.561 -13.497 0.73 38.53 ? C1' ATP 701 B 1 HETATM 14 N N9 ATP . . . E 2 -28.631 8.764 -12.196 0.73 38.77 ? N9 ATP 701 B 1 HETATM 15 C C8 ATP . . . E 2 -29.258 8.951 -10.991 0.73 38.79 ? C8 ATP 701 B 1 HETATM 16 N N7 ATP . . . E 2 -28.44 9.11 -9.98 0.73 38.67 ? N7 ATP 701 B 1 HETATM 17 C C5 ATP . . . E 2 -27.182 9.024 -10.56 0.73 38.9 ? C5 ATP 701 B 1 HETATM 18 C C6 ATP . . . E 2 -25.882 9.111 -10.027 0.73 39.16 ? C6 ATP 701 B 1 HETATM 19 N N6 ATP . . . E 2 -25.619 9.314 -8.732 0.73 39.19 ? N6 ATP 701 B 1 HETATM 20 N N1 ATP . . . E 2 -24.842 8.982 -10.881 0.73 38.87 ? N1 ATP 701 B 1 HETATM 21 C C2 ATP . . . E 2 -25.096 8.78 -12.176 0.73 39.53 ? C2 ATP 701 B 1 HETATM 22 N N3 ATP . . . E 2 -26.276 8.68 -12.792 0.73 39.1 ? N3 ATP 701 B 1 HETATM 23 C C4 ATP . . . E 2 -27.286 8.811 -11.925 0.73 38.87 ? C4 ATP 701 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #