data_8WIJ # _model_server_result.job_id x4RdiJhle8OXStDw8gLYVw _model_server_result.datetime_utc '2024-10-11 02:18:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8WIJ # _exptl.entry_id 8WIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.318 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WIJ _cell.length_a 103.246 _cell.length_b 84.244 _cell.length_c 102.587 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 94 B CYS 334 1_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc2 A NE2 HIS 145 B HIS 385 1_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A ND1 HIS 271 B HIS 511 1_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 C O1 X5V . B X5V 701 1_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc5 C O7 X5V . B X5V 701 1_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 B SG CYS 94 A CYS 334 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 B NE2 HIS 145 A HIS 385 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 B ND1 HIS 271 A HIS 511 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc9 E O1 X5V . A X5V 701 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc10 E O7 X5V . A X5V 701 1_555 F ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C17 H16 N2 O8' _chem_comp.formula_weight 376.318 _chem_comp.id X5V _chem_comp.mon_nstd_flag n _chem_comp.name N-(2,3-dihydroxybenzoyl)-4-(4-nitrophenyl)-L-threonine _chem_comp.type 'l-peptide nh3 amino terminus' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 X5V doub 376 n y C1 C6 X5V sing 377 n y C2 C3 X5V sing 378 n y O1 C6 X5V sing 379 n n C6 C16 X5V doub 380 n y C3 C4 X5V doub 381 n y C16 C4 X5V sing 382 n y C16 O7 X5V sing 383 n n C4 C5 X5V sing 384 n n C5 O6 X5V doub 385 n n C5 N1 X5V sing 386 n n N1 C61 X5V sing 387 n n O2 C7 X5V doub 388 n n C61 C7 X5V sing 389 n n C61 C8 X5V sing 390 n n O5 C8 X5V sing 391 n n C8 C9 X5V sing 392 n n C9 C10 X5V sing 393 n n C10 C15 X5V doub 394 n y C10 C11 X5V sing 395 n y C15 C14 X5V sing 396 n y C11 C12 X5V doub 397 n y C14 C13 X5V doub 398 n y C12 C13 X5V sing 399 n y C13 N11 X5V sing 400 n n N11 O4 X5V doub 401 n n N11 O3 X5V doub 402 n n N1 H1 X5V sing 403 n n C1 H2 X5V sing 404 n n O1 H3 X5V sing 405 n n C2 H4 X5V sing 406 n n C3 H5 X5V sing 407 n n C8 H7 X5V sing 408 n n C9 H8 X5V sing 409 n n C9 H9 X5V sing 410 n n C11 H10 X5V sing 411 n n C12 H11 X5V sing 412 n n C14 H12 X5V sing 413 n n C15 H13 X5V sing 414 n n C61 H14 X5V sing 415 n n O5 H15 X5V sing 416 n n O7 H16 X5V sing 417 n n C7 O8 X5V sing 418 n n O8 H6 X5V sing 419 n n # _atom_sites.entry_id 8WIJ _atom_sites.fract_transf_matrix[1][1] 0.009686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X5V B 1 701 701 X5V X5V . D 3 ZN B 1 702 702 ZN ZN . E 2 X5V A 1 701 701 X5V X5V . F 3 ZN A 1 702 702 ZN ZN . G 4 HOH B 1 801 880 HOH HOH . G 4 HOH B 2 802 898 HOH HOH . H 4 HOH A 1 801 885 HOH HOH . H 4 HOH A 2 802 849 HOH HOH . H 4 HOH A 3 803 867 HOH HOH . H 4 HOH A 4 804 833 HOH HOH . H 4 HOH A 5 805 863 HOH HOH . H 4 HOH A 6 806 893 HOH HOH . H 4 HOH A 7 807 872 HOH HOH . H 4 HOH A 8 808 912 HOH HOH . H 4 HOH A 9 809 891 HOH HOH . H 4 HOH A 10 810 882 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 X5V . . . C 2 30.357 -19.223 -9.108 0.78 76.83 ? N1 X5V 701 B 1 HETATM 2 C C1 X5V . . . C 2 28.474 -15.101 -11.601 0.78 71.91 ? C1 X5V 701 B 1 HETATM 3 O O1 X5V . . . C 2 26.498 -16.132 -10.616 0.78 74.64 ? O1 X5V 701 B 1 HETATM 4 C C2 X5V . . . C 2 29.857 -15.055 -11.732 0.78 72.27 ? C2 X5V 701 B 1 HETATM 5 C C3 X5V . . . C 2 30.655 -15.957 -11.035 0.78 73.69 ? C3 X5V 701 B 1 HETATM 6 C C4 X5V . . . C 2 30.066 -16.905 -10.211 0.78 75.48 ? C4 X5V 701 B 1 HETATM 7 C C5 X5V . . . C 2 30.935 -17.919 -9.429 0.78 75.81 ? C5 X5V 701 B 1 HETATM 8 C C6 X5V . . . C 2 27.89 -16.051 -10.774 0.78 73.25 ? C6 X5V 701 B 1 HETATM 9 C C7 X5V . . . C 2 30.615 -21.585 -8.941 0.78 77.98 ? C7 X5V 701 B 1 HETATM 10 C C8 X5V . . . C 2 30.585 -20.138 -6.922 0.78 77.82 ? C8 X5V 701 B 1 HETATM 11 C C9 X5V . . . C 2 31.692 -19.475 -6.07 0.78 78.94 ? C9 X5V 701 B 1 HETATM 12 C C10 X5V . . . C 2 31.219 -18.943 -4.676 0.78 81.38 ? C10 X5V 701 B 1 HETATM 13 C C11 X5V . . . C 2 29.999 -19.348 -4.128 0.78 81.76 ? C11 X5V 701 B 1 HETATM 14 C C12 X5V . . . C 2 29.589 -18.864 -2.883 0.78 81.66 ? C12 X5V 701 B 1 HETATM 15 C C13 X5V . . . C 2 30.405 -17.979 -2.181 0.78 81.81 ? C13 X5V 701 B 1 HETATM 16 C C14 X5V . . . C 2 31.623 -17.576 -2.72 0.78 80.96 ? C14 X5V 701 B 1 HETATM 17 C C15 X5V . . . C 2 32.032 -18.06 -3.97 0.78 81.03 ? C15 X5V 701 B 1 HETATM 18 C C16 X5V . . . C 2 28.681 -16.949 -10.082 0.78 76.14 ? C16 X5V 701 B 1 HETATM 19 O O2 X5V . . . C 2 29.328 -21.395 -9.472 0.78 77.28 ? O2 X5V 701 B 1 HETATM 20 C C61 X5V . . . C 2 31.071 -20.246 -8.373 0.78 77.5 ? C61 X5V 701 B 1 HETATM 21 N N11 X5V . . . C 2 29.975 -17.474 -0.87 0.78 81.35 ? N11 X5V 701 B 1 HETATM 22 O O3 X5V . . . C 2 30.771 -16.537 -0.184 0.78 80.52 ? O3 X5V 701 B 1 HETATM 23 O O4 X5V . . . C 2 28.767 -17.929 -0.303 0.78 81.22 ? O4 X5V 701 B 1 HETATM 24 O O5 X5V . . . C 2 29.442 -19.345 -6.929 0.78 77.75 ? O5 X5V 701 B 1 HETATM 25 O O6 X5V . . . C 2 32.039 -17.644 -9.103 0.78 76.07 ? O6 X5V 701 B 1 HETATM 26 O O7 X5V . . . C 2 28.051 -17.89 -9.258 0.78 78.64 ? O7 X5V 701 B 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #