data_8WJ5 # _model_server_result.job_id SdcNwZzNGVG6vJB5hJbjxg _model_server_result.datetime_utc '2024-11-12 22:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8wj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8WJ5 # _exptl.entry_id 8WJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8WJ5 _cell.length_a 75.545 _cell.length_b 75.545 _cell.length_c 62.043 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8WJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 62 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 82 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 93 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 113 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.05 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 8WJ5 _atom_sites.fract_transf_matrix[1][1] 0.013237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 3 EPE A 1 202 1 EPE EPE . D 4 HOH A 1 301 122 HOH HOH . D 4 HOH A 2 302 62 HOH HOH . D 4 HOH A 3 303 119 HOH HOH . D 4 HOH A 4 304 35 HOH HOH . D 4 HOH A 5 305 98 HOH HOH . D 4 HOH A 6 306 107 HOH HOH . D 4 HOH A 7 307 66 HOH HOH . D 4 HOH A 8 308 78 HOH HOH . D 4 HOH A 9 309 34 HOH HOH . D 4 HOH A 10 310 20 HOH HOH . D 4 HOH A 11 311 75 HOH HOH . D 4 HOH A 12 312 42 HOH HOH . D 4 HOH A 13 313 10 HOH HOH . D 4 HOH A 14 314 11 HOH HOH . D 4 HOH A 15 315 18 HOH HOH . D 4 HOH A 16 316 2 HOH HOH . D 4 HOH A 17 317 71 HOH HOH . D 4 HOH A 18 318 13 HOH HOH . D 4 HOH A 19 319 68 HOH HOH . D 4 HOH A 20 320 120 HOH HOH . D 4 HOH A 21 321 29 HOH HOH . D 4 HOH A 22 322 96 HOH HOH . D 4 HOH A 23 323 9 HOH HOH . D 4 HOH A 24 324 37 HOH HOH . D 4 HOH A 25 325 32 HOH HOH . D 4 HOH A 26 326 51 HOH HOH . D 4 HOH A 27 327 74 HOH HOH . D 4 HOH A 28 328 90 HOH HOH . D 4 HOH A 29 329 76 HOH HOH . D 4 HOH A 30 330 63 HOH HOH . D 4 HOH A 31 331 116 HOH HOH . D 4 HOH A 32 332 38 HOH HOH . D 4 HOH A 33 333 25 HOH HOH . D 4 HOH A 34 334 99 HOH HOH . D 4 HOH A 35 335 22 HOH HOH . D 4 HOH A 36 336 110 HOH HOH . D 4 HOH A 37 337 57 HOH HOH . D 4 HOH A 38 338 89 HOH HOH . D 4 HOH A 39 339 108 HOH HOH . D 4 HOH A 40 340 67 HOH HOH . D 4 HOH A 41 341 33 HOH HOH . D 4 HOH A 42 342 43 HOH HOH . D 4 HOH A 43 343 83 HOH HOH . D 4 HOH A 44 344 6 HOH HOH . D 4 HOH A 45 345 26 HOH HOH . D 4 HOH A 46 346 101 HOH HOH . D 4 HOH A 47 347 3 HOH HOH . D 4 HOH A 48 348 61 HOH HOH . D 4 HOH A 49 349 12 HOH HOH . D 4 HOH A 50 350 39 HOH HOH . D 4 HOH A 51 351 102 HOH HOH . D 4 HOH A 52 352 45 HOH HOH . D 4 HOH A 53 353 69 HOH HOH . D 4 HOH A 54 354 31 HOH HOH . D 4 HOH A 55 355 93 HOH HOH . D 4 HOH A 56 356 55 HOH HOH . D 4 HOH A 57 357 52 HOH HOH . D 4 HOH A 58 358 23 HOH HOH . D 4 HOH A 59 359 28 HOH HOH . D 4 HOH A 60 360 65 HOH HOH . D 4 HOH A 61 361 14 HOH HOH . D 4 HOH A 62 362 64 HOH HOH . D 4 HOH A 63 363 41 HOH HOH . D 4 HOH A 64 364 88 HOH HOH . D 4 HOH A 65 365 49 HOH HOH . D 4 HOH A 66 366 58 HOH HOH . D 4 HOH A 67 367 5 HOH HOH . D 4 HOH A 68 368 19 HOH HOH . D 4 HOH A 69 369 94 HOH HOH . D 4 HOH A 70 370 54 HOH HOH . D 4 HOH A 71 371 27 HOH HOH . D 4 HOH A 72 372 95 HOH HOH . D 4 HOH A 73 373 24 HOH HOH . D 4 HOH A 74 374 59 HOH HOH . D 4 HOH A 75 375 92 HOH HOH . D 4 HOH A 76 376 112 HOH HOH . D 4 HOH A 77 377 21 HOH HOH . D 4 HOH A 78 378 40 HOH HOH . D 4 HOH A 79 379 17 HOH HOH . D 4 HOH A 80 380 30 HOH HOH . D 4 HOH A 81 381 80 HOH HOH . D 4 HOH A 82 382 1 HOH HOH . D 4 HOH A 83 383 91 HOH HOH . D 4 HOH A 84 384 105 HOH HOH . D 4 HOH A 85 385 118 HOH HOH . D 4 HOH A 86 386 56 HOH HOH . D 4 HOH A 87 387 100 HOH HOH . D 4 HOH A 88 388 97 HOH HOH . D 4 HOH A 89 389 79 HOH HOH . D 4 HOH A 90 390 44 HOH HOH . D 4 HOH A 91 391 50 HOH HOH . D 4 HOH A 92 392 48 HOH HOH . D 4 HOH A 93 393 86 HOH HOH . D 4 HOH A 94 394 81 HOH HOH . D 4 HOH A 95 395 46 HOH HOH . D 4 HOH A 96 396 113 HOH HOH . D 4 HOH A 97 397 16 HOH HOH . D 4 HOH A 98 398 60 HOH HOH . D 4 HOH A 99 399 85 HOH HOH . D 4 HOH A 100 400 117 HOH HOH . D 4 HOH A 101 401 121 HOH HOH . D 4 HOH A 102 402 106 HOH HOH . D 4 HOH A 103 403 53 HOH HOH . D 4 HOH A 104 404 72 HOH HOH . D 4 HOH A 105 405 82 HOH HOH . D 4 HOH A 106 406 36 HOH HOH . D 4 HOH A 107 407 8 HOH HOH . D 4 HOH A 108 408 77 HOH HOH . D 4 HOH A 109 409 7 HOH HOH . D 4 HOH A 110 410 109 HOH HOH . D 4 HOH A 111 411 84 HOH HOH . D 4 HOH A 112 412 15 HOH HOH . D 4 HOH A 113 413 103 HOH HOH . D 4 HOH A 114 414 4 HOH HOH . D 4 HOH A 115 415 73 HOH HOH . D 4 HOH A 116 416 70 HOH HOH . D 4 HOH A 117 417 111 HOH HOH . D 4 HOH A 118 418 87 HOH HOH . D 4 HOH A 119 419 114 HOH HOH . D 4 HOH A 120 420 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . C 3 16.138 -12.824 20.212 1 26.96 ? N1 EPE 202 A 1 HETATM 2 C C2 EPE . . . C 3 16.614 -14.167 19.856 1 33 ? C2 EPE 202 A 1 HETATM 3 C C3 EPE . . . C 3 17.707 -14.137 18.793 1 35.08 ? C3 EPE 202 A 1 HETATM 4 N N4 EPE . . . C 3 17.463 -13.219 17.7 1 37.35 ? N4 EPE 202 A 1 HETATM 5 C C5 EPE . . . C 3 16.736 -11.991 17.992 1 38.84 ? C5 EPE 202 A 1 HETATM 6 C C6 EPE . . . C 3 15.603 -12.185 19.001 1 40.87 ? C6 EPE 202 A 1 HETATM 7 C C7 EPE . . . C 3 18.465 -13.162 16.646 1 28.34 ? C7 EPE 202 A 1 HETATM 8 C C8 EPE . . . C 3 19.086 -14.501 16.263 1 23.94 ? C8 EPE 202 A 1 HETATM 9 O O8 EPE . . . C 3 18.265 -15.164 15.323 1 29.53 ? O8 EPE 202 A 1 HETATM 10 C C9 EPE . . . C 3 15.063 -13.01 21.21 1 32.16 ? C9 EPE 202 A 1 HETATM 11 C C10 EPE . . . C 3 15.234 -11.986 22.312 1 13.72 ? C10 EPE 202 A 1 HETATM 12 S S EPE . . . C 3 14.807 -12.479 23.999 1 16.2 ? S EPE 202 A 1 HETATM 13 O O1S EPE . . . C 3 14.118 -13.769 24.045 1 20.47 ? O1S EPE 202 A 1 HETATM 14 O O2S EPE . . . C 3 13.989 -11.417 24.551 1 16.79 ? O2S EPE 202 A 1 HETATM 15 O O3S EPE . . . C 3 16.058 -12.549 24.726 1 10.84 ? O3S EPE 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 15 #